Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03611

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03610 and H281DRAFT_03611 are separated by 3 nucleotidesH281DRAFT_03611 and H281DRAFT_03612 are separated by 46 nucleotides H281DRAFT_03610: H281DRAFT_03610 - squalene-hopene/tetraprenyl-beta-curcumene cyclase, at 118,918 to 120,978 _03610 H281DRAFT_03611: H281DRAFT_03611 - hopanoid-associated phosphorylase, at 120,982 to 121,710 _03611 H281DRAFT_03612: H281DRAFT_03612 - phospholipid-binding lipoprotein MlaA, at 121,757 to 122,827 _03612 Position (kb) 120 121 122Strain fitness (log2 ratio) -2 -1 0 1at 120.160 kb on + strand, within H281DRAFT_03610at 120.331 kb on + strand, within H281DRAFT_03610at 120.332 kb on - strand, within H281DRAFT_03610at 120.334 kb on + strand, within H281DRAFT_03610at 120.476 kb on - strand, within H281DRAFT_03610at 120.538 kb on + strand, within H281DRAFT_03610at 120.539 kb on - strand, within H281DRAFT_03610at 120.797 kb on - strandat 120.976 kb on + strandat 120.977 kb on - strandat 120.977 kb on - strandat 121.100 kb on - strand, within H281DRAFT_03611at 121.206 kb on - strand, within H281DRAFT_03611at 121.510 kb on - strandat 121.510 kb on - strand, within H281DRAFT_03611at 121.759 kb on - strandat 121.759 kb on - strandat 121.759 kb on - strandat 121.759 kb on - strandat 121.793 kb on - strandat 121.793 kb on - strandat 121.888 kb on + strand, within H281DRAFT_03612at 122.047 kb on - strand, within H281DRAFT_03612at 122.189 kb on - strand, within H281DRAFT_03612at 122.190 kb on + strand, within H281DRAFT_03612at 122.190 kb on + strand, within H281DRAFT_03612at 122.191 kb on - strand, within H281DRAFT_03612at 122.191 kb on - strand, within H281DRAFT_03612at 122.211 kb on + strand, within H281DRAFT_03612at 122.211 kb on + strand, within H281DRAFT_03612at 122.211 kb on + strand, within H281DRAFT_03612at 122.215 kb on + strand, within H281DRAFT_03612at 122.319 kb on + strand, within H281DRAFT_03612at 122.319 kb on + strand, within H281DRAFT_03612at 122.320 kb on - strand, within H281DRAFT_03612at 122.320 kb on - strand, within H281DRAFT_03612at 122.320 kb on - strand, within H281DRAFT_03612at 122.320 kb on - strand, within H281DRAFT_03612at 122.320 kb on - strand, within H281DRAFT_03612at 122.404 kb on - strand, within H281DRAFT_03612at 122.658 kb on + strand, within H281DRAFT_03612at 122.686 kb on - strand, within H281DRAFT_03612

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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120,160 + H281DRAFT_03610 0.60 -1.9
120,331 + H281DRAFT_03610 0.69 +0.1
120,332 - H281DRAFT_03610 0.69 +0.6
120,334 + H281DRAFT_03610 0.69 -0.2
120,476 - H281DRAFT_03610 0.76 -0.2
120,538 + H281DRAFT_03610 0.79 -1.7
120,539 - H281DRAFT_03610 0.79 -2.0
120,797 - -1.7
120,976 + +0.4
120,977 - -0.8
120,977 - -1.4
121,100 - H281DRAFT_03611 0.16 +0.4
121,206 - H281DRAFT_03611 0.31 +1.5
121,510 - -0.5
121,510 - H281DRAFT_03611 0.72 +0.7
121,759 - -0.7
121,759 - -0.4
121,759 - -0.5
121,759 - +0.1
121,793 - -0.1
121,793 - -0.2
121,888 + H281DRAFT_03612 0.12 -0.3
122,047 - H281DRAFT_03612 0.27 -0.1
122,189 - H281DRAFT_03612 0.40 +0.4
122,190 + H281DRAFT_03612 0.40 +0.7
122,190 + H281DRAFT_03612 0.40 -0.1
122,191 - H281DRAFT_03612 0.41 +0.3
122,191 - H281DRAFT_03612 0.41 +1.2
122,211 + H281DRAFT_03612 0.42 +0.9
122,211 + H281DRAFT_03612 0.42 +0.2
122,211 + H281DRAFT_03612 0.42 -0.1
122,215 + H281DRAFT_03612 0.43 -0.5
122,319 + H281DRAFT_03612 0.52 +0.2
122,319 + H281DRAFT_03612 0.52 +0.6
122,320 - H281DRAFT_03612 0.53 +0.3
122,320 - H281DRAFT_03612 0.53 -0.6
122,320 - H281DRAFT_03612 0.53 -0.5
122,320 - H281DRAFT_03612 0.53 -0.8
122,320 - H281DRAFT_03612 0.53 -1.6
122,404 - H281DRAFT_03612 0.60 -0.7
122,658 + H281DRAFT_03612 0.84 +1.0
122,686 - H281DRAFT_03612 0.87 +0.5

Or see this region's nucleotide sequence