Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02561

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02560 and H281DRAFT_02561 are separated by 251 nucleotidesH281DRAFT_02561 and H281DRAFT_02562 are separated by 20 nucleotides H281DRAFT_02560: H281DRAFT_02560 - LPS-assembly protein, at 133,796 to 136,081 _02560 H281DRAFT_02561: H281DRAFT_02561 - NADP-dependent 3-hydroxy acid dehydrogenase YdfG, at 136,333 to 137,028 _02561 H281DRAFT_02562: H281DRAFT_02562 - Glycine/D-amino acid oxidase (deaminating), at 137,049 to 138,389 _02562 Position (kb) 136 137 138Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 135.629 kb on + strand, within H281DRAFT_02560at 135.896 kb on + strandat 136.172 kb on + strandat 136.172 kb on + strandat 136.173 kb on - strandat 136.405 kb on - strand, within H281DRAFT_02561at 136.911 kb on - strand, within H281DRAFT_02561at 136.935 kb on + strand, within H281DRAFT_02561at 137.475 kb on + strand, within H281DRAFT_02562at 137.510 kb on - strand, within H281DRAFT_02562at 137.566 kb on + strand, within H281DRAFT_02562

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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135,629 + H281DRAFT_02560 0.80 -0.1
135,896 + +0.6
136,172 + -0.8
136,172 + +0.1
136,173 - -0.4
136,405 - H281DRAFT_02561 0.10 +0.3
136,911 - H281DRAFT_02561 0.83 -3.0
136,935 + H281DRAFT_02561 0.86 +1.9
137,475 + H281DRAFT_02562 0.32 -1.5
137,510 - H281DRAFT_02562 0.34 -0.1
137,566 + H281DRAFT_02562 0.39 -0.0

Or see this region's nucleotide sequence