Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01880

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01878 and H281DRAFT_01879 are separated by 148 nucleotidesH281DRAFT_01879 and H281DRAFT_01880 are separated by 263 nucleotidesH281DRAFT_01880 and H281DRAFT_01881 overlap by 4 nucleotides H281DRAFT_01878: H281DRAFT_01878 - membrane fusion protein, multidrug efflux system, at 794,986 to 796,419 _01878 H281DRAFT_01879: H281DRAFT_01879 - Response regulator, at 796,568 to 796,954 _01879 H281DRAFT_01880: H281DRAFT_01880 - two component transcriptional regulator, LuxR family, at 797,218 to 797,877 _01880 H281DRAFT_01881: H281DRAFT_01881 - two-component system, LuxR family, sensor kinase FixL, at 797,874 to 799,334 _01881 Position (kb) 797 798Strain fitness (log2 ratio) -1 0 1at 797.482 kb on + strand, within H281DRAFT_01880at 797.880 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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797,482 + H281DRAFT_01880 0.40 -0.2
797,880 - -0.5

Or see this region's nucleotide sequence