Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01708

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01707 and H281DRAFT_01708 are separated by 69 nucleotidesH281DRAFT_01708 and H281DRAFT_01709 are separated by 83 nucleotides H281DRAFT_01707: H281DRAFT_01707 - Alkyl sulfatase BDS1, metallo-beta-lactamase superfamily, at 592,685 to 594,790 _01707 H281DRAFT_01708: H281DRAFT_01708 - hypothetical protein, at 594,860 to 595,066 _01708 H281DRAFT_01709: H281DRAFT_01709 - hypothetical protein, at 595,150 to 595,962 _01709 Position (kb) 594 595 596Strain fitness (log2 ratio) -2 -1 0 1at 593.918 kb on + strand, within H281DRAFT_01707at 594.332 kb on - strand, within H281DRAFT_01707at 594.412 kb on + strand, within H281DRAFT_01707at 594.825 kb on - strandat 595.093 kb on + strandat 595.329 kb on - strand, within H281DRAFT_01709at 595.376 kb on + strand, within H281DRAFT_01709at 595.377 kb on - strand, within H281DRAFT_01709at 595.380 kb on + strand, within H281DRAFT_01709at 595.380 kb on + strand, within H281DRAFT_01709at 595.467 kb on - strand, within H281DRAFT_01709at 596.026 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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593,918 + H281DRAFT_01707 0.59 +1.0
594,332 - H281DRAFT_01707 0.78 -1.9
594,412 + H281DRAFT_01707 0.82 -0.0
594,825 - +0.0
595,093 + +0.8
595,329 - H281DRAFT_01709 0.22 +0.6
595,376 + H281DRAFT_01709 0.28 +0.4
595,377 - H281DRAFT_01709 0.28 +1.6
595,380 + H281DRAFT_01709 0.28 +0.2
595,380 + H281DRAFT_01709 0.28 -0.7
595,467 - H281DRAFT_01709 0.39 +0.7
596,026 - +0.8

Or see this region's nucleotide sequence