Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01050

Experiment: acetate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_01049 and H281DRAFT_01050 are separated by 106 nucleotidesH281DRAFT_01050 and H281DRAFT_01051 overlap by 4 nucleotidesH281DRAFT_01051 and H281DRAFT_01052 are separated by 27 nucleotides H281DRAFT_01049: H281DRAFT_01049 - Nucleoside-diphosphate-sugar epimerase, at 1,179,326 to 1,180,396 _01049 H281DRAFT_01050: H281DRAFT_01050 - maleylacetate reductase, at 1,180,503 to 1,181,597 _01050 H281DRAFT_01051: H281DRAFT_01051 - hydroxyquinol 1,2-dioxygenase, at 1,181,594 to 1,182,454 _01051 H281DRAFT_01052: H281DRAFT_01052 - hypothetical protein, at 1,182,482 to 1,182,766 _01052 Position (kb) 1180 1181 1182Strain fitness (log2 ratio) -1 0 1at 1180.051 kb on - strand, within H281DRAFT_01049at 1180.379 kb on - strandat 1180.603 kb on + strandat 1181.045 kb on - strand, within H281DRAFT_01050at 1181.131 kb on + strand, within H281DRAFT_01050at 1181.200 kb on + strand, within H281DRAFT_01050

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
remove
1,180,051 - H281DRAFT_01049 0.68 +0.3
1,180,379 - -0.6
1,180,603 + +0.2
1,181,045 - H281DRAFT_01050 0.49 +0.8
1,181,131 + H281DRAFT_01050 0.57 +0.2
1,181,200 + H281DRAFT_01050 0.64 +1.0

Or see this region's nucleotide sequence