Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01004

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01002 and H281DRAFT_01003 are separated by 63 nucleotidesH281DRAFT_01003 and H281DRAFT_01004 are separated by 556 nucleotidesH281DRAFT_01004 and H281DRAFT_01005 are separated by 349 nucleotides H281DRAFT_01002: H281DRAFT_01002 - two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ, at 1,127,799 to 1,129,046 _01002 H281DRAFT_01003: H281DRAFT_01003 - hypothetical protein, at 1,129,110 to 1,129,274 _01003 H281DRAFT_01004: H281DRAFT_01004 - putative iron-dependent peroxidase, at 1,129,831 to 1,130,799 _01004 H281DRAFT_01005: H281DRAFT_01005 - PilZ domain-containing protein, at 1,131,149 to 1,132,036 _01005 Position (kb) 1129 1130 1131Strain fitness (log2 ratio) -1 0 1at 1129.274 kb on + strandat 1129.296 kb on - strandat 1129.358 kb on - strandat 1129.358 kb on - strandat 1129.383 kb on - strandat 1129.393 kb on + strandat 1129.423 kb on + strandat 1129.424 kb on - strandat 1129.591 kb on - strandat 1130.327 kb on + strand, within H281DRAFT_01004at 1130.328 kb on - strand, within H281DRAFT_01004at 1130.328 kb on - strand, within H281DRAFT_01004at 1130.399 kb on - strand, within H281DRAFT_01004at 1130.563 kb on - strand, within H281DRAFT_01004at 1130.617 kb on + strand, within H281DRAFT_01004at 1130.618 kb on - strand, within H281DRAFT_01004at 1130.618 kb on - strand, within H281DRAFT_01004at 1130.698 kb on + strand, within H281DRAFT_01004at 1130.731 kb on - strandat 1131.135 kb on + strandat 1131.495 kb on - strand, within H281DRAFT_01005

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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1,129,274 + -0.4
1,129,296 - +0.2
1,129,358 - -0.7
1,129,358 - -0.3
1,129,383 - -0.3
1,129,393 + -0.6
1,129,423 + -0.4
1,129,424 - +0.4
1,129,591 - -0.3
1,130,327 + H281DRAFT_01004 0.51 -1.0
1,130,328 - H281DRAFT_01004 0.51 -1.4
1,130,328 - H281DRAFT_01004 0.51 -0.9
1,130,399 - H281DRAFT_01004 0.59 -0.3
1,130,563 - H281DRAFT_01004 0.76 +0.7
1,130,617 + H281DRAFT_01004 0.81 -0.4
1,130,618 - H281DRAFT_01004 0.81 +0.7
1,130,618 - H281DRAFT_01004 0.81 +0.8
1,130,698 + H281DRAFT_01004 0.89 +0.3
1,130,731 - -0.3
1,131,135 + -0.0
1,131,495 - H281DRAFT_01005 0.39 +0.2

Or see this region's nucleotide sequence