Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01001

Experiment: acetate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_01000 and H281DRAFT_01001 are separated by 338 nucleotidesH281DRAFT_01001 and H281DRAFT_01002 overlap by 17 nucleotides H281DRAFT_01000: H281DRAFT_01000 - membrane fusion protein, multidrug efflux system, at 1,125,495 to 1,126,736 _01000 H281DRAFT_01001: H281DRAFT_01001 - DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain, at 1,127,075 to 1,127,815 _01001 H281DRAFT_01002: H281DRAFT_01002 - two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ, at 1,127,799 to 1,129,046 _01002 Position (kb) 1127 1128Strain fitness (log2 ratio) -1 0 1at 1126.396 kb on + strand, within H281DRAFT_01000at 1126.397 kb on - strand, within H281DRAFT_01000at 1126.408 kb on + strand, within H281DRAFT_01000at 1126.408 kb on + strand, within H281DRAFT_01000at 1126.409 kb on - strand, within H281DRAFT_01000at 1126.871 kb on - strandat 1126.955 kb on + strandat 1126.962 kb on + strandat 1126.962 kb on + strandat 1127.052 kb on + strandat 1127.533 kb on + strand, within H281DRAFT_01001at 1127.580 kb on - strand, within H281DRAFT_01001at 1127.757 kb on + strandat 1127.758 kb on - strandat 1127.758 kb on - strandat 1127.774 kb on - strandat 1127.774 kb on - strandat 1127.814 kb on - strandat 1127.814 kb on - strandat 1127.814 kb on - strandat 1127.816 kb on + strandat 1127.873 kb on + strandat 1127.874 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
remove
1,126,396 + H281DRAFT_01000 0.73 +0.1
1,126,397 - H281DRAFT_01000 0.73 -0.4
1,126,408 + H281DRAFT_01000 0.74 -0.7
1,126,408 + H281DRAFT_01000 0.74 +0.1
1,126,409 - H281DRAFT_01000 0.74 -0.2
1,126,871 - +0.8
1,126,955 + +0.3
1,126,962 + +0.9
1,126,962 + +0.2
1,127,052 + -0.8
1,127,533 + H281DRAFT_01001 0.62 +0.8
1,127,580 - H281DRAFT_01001 0.68 +0.9
1,127,757 + +0.3
1,127,758 - +0.0
1,127,758 - -0.6
1,127,774 - +1.0
1,127,774 - +0.1
1,127,814 - -1.2
1,127,814 - +0.3
1,127,814 - -0.0
1,127,816 + -0.2
1,127,873 + -0.3
1,127,874 - +0.2

Or see this region's nucleotide sequence