Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00949

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00948 and H281DRAFT_00949 are separated by 21 nucleotidesH281DRAFT_00949 and H281DRAFT_00950 are separated by 77 nucleotides H281DRAFT_00948: H281DRAFT_00948 - tyrosine-protein kinase Etk/Wzc, at 1,054,574 to 1,056,772 _00948 H281DRAFT_00949: H281DRAFT_00949 - Glycosyltransferase, GT2 family, at 1,056,794 to 1,057,762 _00949 H281DRAFT_00950: H281DRAFT_00950 - Glycosyltransferase involved in cell wall bisynthesis, at 1,057,840 to 1,059,024 _00950 Position (kb) 1056 1057 1058Strain fitness (log2 ratio) -2 -1 0 1 2at 1055.962 kb on + strand, within H281DRAFT_00948at 1055.963 kb on - strand, within H281DRAFT_00948at 1056.495 kb on - strand, within H281DRAFT_00948at 1056.843 kb on + strandat 1056.964 kb on + strand, within H281DRAFT_00949at 1056.964 kb on + strand, within H281DRAFT_00949at 1056.965 kb on - strand, within H281DRAFT_00949at 1057.080 kb on + strand, within H281DRAFT_00949at 1057.922 kb on - strandat 1057.986 kb on + strand, within H281DRAFT_00950at 1058.345 kb on - strand, within H281DRAFT_00950at 1058.485 kb on + strand, within H281DRAFT_00950at 1058.588 kb on - strand, within H281DRAFT_00950

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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1,055,962 + H281DRAFT_00948 0.63 +0.4
1,055,963 - H281DRAFT_00948 0.63 +0.9
1,056,495 - H281DRAFT_00948 0.87 -0.1
1,056,843 + -1.9
1,056,964 + H281DRAFT_00949 0.18 +2.1
1,056,964 + H281DRAFT_00949 0.18 +0.7
1,056,965 - H281DRAFT_00949 0.18 +0.8
1,057,080 + H281DRAFT_00949 0.30 +0.4
1,057,922 - +1.3
1,057,986 + H281DRAFT_00950 0.12 -0.1
1,058,345 - H281DRAFT_00950 0.43 +0.6
1,058,485 + H281DRAFT_00950 0.54 +0.7
1,058,588 - H281DRAFT_00950 0.63 +0.1

Or see this region's nucleotide sequence