Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00704

Experiment: acetate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_00703 and H281DRAFT_00704 are separated by 35 nucleotidesH281DRAFT_00704 and H281DRAFT_00705 overlap by 4 nucleotides H281DRAFT_00703: H281DRAFT_00703 - Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein, at 788,582 to 789,652 _00703 H281DRAFT_00704: H281DRAFT_00704 - 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway), at 789,688 to 790,644 _00704 H281DRAFT_00705: H281DRAFT_00705 - fatty-acyl-CoA synthase, at 790,641 to 792,560 _00705 Position (kb) 789 790 791Strain fitness (log2 ratio) -1 0 1at 789.165 kb on + strand, within H281DRAFT_00703at 789.665 kb on + strandat 789.687 kb on + strandat 789.710 kb on - strandat 790.000 kb on - strand, within H281DRAFT_00704at 790.216 kb on + strand, within H281DRAFT_00704at 790.222 kb on - strand, within H281DRAFT_00704at 790.243 kb on + strand, within H281DRAFT_00704at 790.351 kb on + strand, within H281DRAFT_00704at 790.352 kb on - strand, within H281DRAFT_00704at 791.426 kb on - strand, within H281DRAFT_00705

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
remove
789,165 + H281DRAFT_00703 0.54 +1.1
789,665 + -0.5
789,687 + +0.7
789,710 - +0.3
790,000 - H281DRAFT_00704 0.33 +0.7
790,216 + H281DRAFT_00704 0.55 +0.1
790,222 - H281DRAFT_00704 0.56 +1.1
790,243 + H281DRAFT_00704 0.58 +1.1
790,351 + H281DRAFT_00704 0.69 +0.3
790,352 - H281DRAFT_00704 0.69 +0.6
791,426 - H281DRAFT_00705 0.41 -0.2

Or see this region's nucleotide sequence