Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00489

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00488 and H281DRAFT_00489 are separated by 37 nucleotidesH281DRAFT_00489 and H281DRAFT_00490 are separated by 422 nucleotides H281DRAFT_00488: H281DRAFT_00488 - exonuclease RecJ, at 546,047 to 547,753 _00488 H281DRAFT_00489: H281DRAFT_00489 - hypothetical protein, at 547,791 to 548,975 _00489 H281DRAFT_00490: H281DRAFT_00490 - lipoprotein-releasing system permease protein, at 549,398 to 550,651 _00490 Position (kb) 547 548 549Strain fitness (log2 ratio) -1 0 1at 547.159 kb on - strand, within H281DRAFT_00488at 547.159 kb on - strand, within H281DRAFT_00488at 547.665 kb on + strandat 547.666 kb on - strandat 547.666 kb on - strandat 548.701 kb on + strand, within H281DRAFT_00489at 548.702 kb on - strand, within H281DRAFT_00489at 548.882 kb on + strandat 548.945 kb on - strandat 549.154 kb on + strandat 549.155 kb on - strandat 549.155 kb on - strandat 549.155 kb on - strandat 549.155 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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547,159 - H281DRAFT_00488 0.65 +0.2
547,159 - H281DRAFT_00488 0.65 -0.5
547,665 + -1.5
547,666 - +0.4
547,666 - -0.0
548,701 + H281DRAFT_00489 0.77 +0.4
548,702 - H281DRAFT_00489 0.77 +0.1
548,882 + +1.6
548,945 - +0.8
549,154 + +0.7
549,155 - -0.1
549,155 - -1.1
549,155 - +0.6
549,155 - +0.1

Or see this region's nucleotide sequence