Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03386

Experiment: PYE_noCalcium 25C survival rep1 28 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE_noCalcium 25C survival rep1 28 days
3,557,262	+		CCNA_03384	0.21	-1.9
3,557,325	+		CCNA_03384	0.48	-3.5
3,557,401	+		CCNA_03384	0.81	+0.8
3,557,437	+				-0.2
3,557,558	+				-0.0
3,557,566	-				-0.9
3,557,604	-				+1.8
3,557,644	+				-1.1
3,557,644	+				-0.7
3,557,645	-				-0.6
3,557,652	-				+1.1
3,557,729	+		CCNA_03385	0.17	-2.4
3,557,748	-		CCNA_03385	0.21	+0.7
3,557,762	+		CCNA_03385	0.24	+1.6
3,557,785	-		CCNA_03385	0.28	+0.1
3,557,798	-		CCNA_03385	0.31	+0.5
3,557,828	+		CCNA_03385	0.37	+1.0
3,557,830	+		CCNA_03385	0.38	+1.1
3,557,854	-		CCNA_03385	0.43	+0.7
3,557,865	-		CCNA_03385	0.45	+1.4
3,557,865	-		CCNA_03385	0.45	+1.4
3,557,865	-		CCNA_03385	0.45	+1.8
3,557,885	-		CCNA_03385	0.49	+1.1
3,557,890	+		CCNA_03385	0.50	-0.8
3,557,890	+		CCNA_03385	0.50	+2.5
3,557,898	-		CCNA_03385	0.52	+1.1
3,557,900	+		CCNA_03385	0.52	-0.5
3,557,924	-		CCNA_03385	0.57	+0.0
3,557,969	+		CCNA_03385	0.66	-1.6
3,558,042	+		CCNA_03385	0.81	-1.1
3,558,074	+		CCNA_03385	0.88	+0.9
3,558,118	+				-1.5
3,558,163	+				+0.1
3,558,165	+				-0.8
3,558,173	-				-1.4
3,558,173	-				-2.0
3,558,175	+				-0.9
3,558,179	+				+0.7
3,558,204	+				+0.4
3,558,204	-				-1.3
3,558,218	-				+0.2
3,558,218	-				+4.5
3,558,235	+				+2.3
3,558,235	-				-0.2
3,558,243	-				+0.2
3,558,301	-				-1.1
3,558,310	+				-0.2
3,558,310	+				+2.9
3,558,310	+				-1.3
3,558,318	-				-0.3
3,558,318	-				+1.7
3,558,318	-				-1.5
3,558,318	-				+4.1
3,558,324	+				-0.0
3,558,383	+				-1.4
3,558,391	-				-2.2
3,558,393	+				+0.4
3,558,393	+				+1.7
3,558,395	+				+0.2
3,558,401	-				-0.0
3,558,424	-		CCNA_03386	0.11	+0.9
3,558,439	+		CCNA_03386	0.11	+0.2
3,558,440	+		CCNA_03386	0.11	+1.6
3,558,442	-		CCNA_03386	0.11	+0.9
3,558,447	-		CCNA_03386	0.12	+2.5
3,558,450	+		CCNA_03386	0.12	+1.3
3,558,461	-		CCNA_03386	0.12	+0.9
3,558,461	-		CCNA_03386	0.12	-1.7
3,558,463	+		CCNA_03386	0.12	+0.4
3,558,471	-		CCNA_03386	0.13	+0.2
3,558,477	+		CCNA_03386	0.13	+1.4
3,558,477	+		CCNA_03386	0.13	+1.2
3,558,482	+		CCNA_03386	0.13	+2.1
3,558,532	+		CCNA_03386	0.16	-1.4
3,558,532	+		CCNA_03386	0.16	+2.6
3,558,540	-		CCNA_03386	0.16	-0.6
3,558,540	-		CCNA_03386	0.16	-1.6
3,558,540	-		CCNA_03386	0.16	+2.5
3,558,542	+		CCNA_03386	0.16	-1.5
3,558,553	+		CCNA_03386	0.17	-0.1
3,558,589	+		CCNA_03386	0.18	+0.6
3,558,611	+		CCNA_03386	0.19	+0.4
3,558,619	-		CCNA_03386	0.20	-0.6
3,558,628	+		CCNA_03386	0.20	+1.7
3,558,644	+		CCNA_03386	0.21	+0.2
3,558,651	+		CCNA_03386	0.21	-1.3
3,558,656	+		CCNA_03386	0.21	+0.7
3,558,663	+		CCNA_03386	0.22	+0.5
3,558,663	+		CCNA_03386	0.22	+1.6
3,558,663	+		CCNA_03386	0.22	+0.7
3,558,663	+		CCNA_03386	0.22	+1.5
3,558,665	+		CCNA_03386	0.22	-0.1
3,558,671	+		CCNA_03386	0.22	-0.5
3,558,671	-		CCNA_03386	0.22	+0.4
3,558,735	+		CCNA_03386	0.25	+2.7
3,558,756	+		CCNA_03386	0.26	+1.5
3,558,804	-		CCNA_03386	0.28	+0.4
3,558,830	+		CCNA_03386	0.29	+0.9
3,558,863	+		CCNA_03386	0.31	+0.9
3,558,863	+		CCNA_03386	0.31	+1.7
3,558,864	-		CCNA_03386	0.31	-1.2
3,558,875	+		CCNA_03386	0.31	-0.8
3,558,961	+		CCNA_03386	0.35	+1.6
3,559,020	-		CCNA_03386	0.38	-0.5
3,559,030	-		CCNA_03386	0.38	-0.2
3,559,030	-		CCNA_03386	0.38	-0.3
3,559,043	-		CCNA_03386	0.39	+0.7
3,559,049	+		CCNA_03386	0.39	+0.8
3,559,049	+		CCNA_03386	0.39	+0.2
3,559,057	-		CCNA_03386	0.39	+0.4
3,559,057	-		CCNA_03386	0.39	-1.8
3,559,057	-		CCNA_03386	0.39	-0.1
3,559,057	-		CCNA_03386	0.39	-2.7
3,559,071	+		CCNA_03386	0.40	+1.4
3,559,071	+		CCNA_03386	0.40	+1.6
3,559,071	+		CCNA_03386	0.40	+1.6
3,559,071	+		CCNA_03386	0.40	+0.4
3,559,071	+		CCNA_03386	0.40	+0.9
3,559,079	-		CCNA_03386	0.40	+2.5
3,559,079	-		CCNA_03386	0.40	-1.8
3,559,079	-		CCNA_03386	0.40	-1.3
3,559,079	-		CCNA_03386	0.40	+0.6
3,559,079	-		CCNA_03386	0.40	-3.0
3,559,079	-		CCNA_03386	0.40	+0.5
3,559,110	+		CCNA_03386	0.42	+1.5
3,559,113	-		CCNA_03386	0.42	-1.6
3,559,211	+		CCNA_03386	0.46	+1.2
3,559,215	-		CCNA_03386	0.47	-1.1
3,559,241	-		CCNA_03386	0.48	-0.3
3,559,241	-		CCNA_03386	0.48	+3.9
3,559,267	+		CCNA_03386	0.49	+1.6
3,559,267	-		CCNA_03386	0.49	+1.6
3,559,273	-		CCNA_03386	0.49	-1.1
3,559,280	-		CCNA_03386	0.50	-0.9
3,559,281	+		CCNA_03386	0.50	+1.5
3,559,349	-		CCNA_03386	0.53	+0.4
3,559,352	+		CCNA_03386	0.53	+4.0
3,559,380	+		CCNA_03386	0.54	+1.5
3,559,403	-		CCNA_03386	0.55	+0.4
3,559,479	+		CCNA_03386	0.59	+0.9
3,559,479	+		CCNA_03386	0.59	-0.2
3,559,479	+		CCNA_03386	0.59	-0.2
3,559,479	+		CCNA_03386	0.59	+2.3
3,559,479	+		CCNA_03386	0.59	+0.3
3,559,482	-		CCNA_03386	0.59	+2.3
3,559,487	-		CCNA_03386	0.59	+1.3
3,559,487	-		CCNA_03386	0.59	+3.7
3,559,487	-		CCNA_03386	0.59	+1.0
3,559,487	-		CCNA_03386	0.59	+2.5
3,559,495	+		CCNA_03386	0.59	-1.2
3,559,508	+		CCNA_03386	0.60	+0.2
3,559,508	+		CCNA_03386	0.60	+0.4
3,559,607	+				+0.5
3,559,610	+		CCNA_03386	0.65	+1.0
3,559,647	-		CCNA_03386	0.66	-0.4
3,559,653	+		CCNA_03386	0.66	+0.8
3,559,678	+		CCNA_03386	0.68	+1.5
3,559,686	-		CCNA_03386	0.68	-0.0
3,559,696	-		CCNA_03386	0.68	-0.3
3,559,762	-		CCNA_03386	0.71	+1.0
3,559,781	+		CCNA_03386	0.72	+0.7
3,559,784	-		CCNA_03386	0.72	+1.6
3,559,786	+		CCNA_03386	0.73	-0.5
3,559,859	-		CCNA_03386	0.76	+1.5
3,559,902	+		CCNA_03386	0.78	+2.3
3,559,947	+		CCNA_03386	0.80	+1.9
3,559,989	+		CCNA_03386	0.82	+2.8
3,559,997	-		CCNA_03386	0.82	-1.6
3,560,028	+		CCNA_03386	0.84	+2.2
3,560,044	+		CCNA_03386	0.84	+1.8
3,560,080	+		CCNA_03386	0.86	+1.0
3,560,199	+				-0.4
3,560,199	+				+1.6
3,560,207	-				-1.6
3,560,237	+				-0.3
3,560,237	+				+1.6
3,560,260	+				+1.5
3,560,260	+				+2.3
3,560,268	-				+1.5
3,560,268	-				-0.7
3,560,268	-				-0.2
3,560,327	+				-0.2
3,560,367	+				+0.9
3,560,375	-				-1.9
3,560,407	-				-0.8
3,560,409	-				-0.0
3,560,409	-				+0.3
3,560,409	-				+0.6
3,560,409	-				-0.1
3,560,409	-				+0.6
3,560,409	-				-1.2
3,560,422	-				+2.5
3,560,496	+				+0.1
3,560,515	+				+0.6
3,560,566	+				-1.1
3,560,579	-		CCNA_03387	0.11	-1.1
3,560,617	+		CCNA_03387	0.16	-0.6
3,560,617	+		CCNA_03387	0.16	-0.0
3,560,625	-		CCNA_03387	0.18	-0.9
3,560,625	-		CCNA_03387	0.18	-0.9
3,560,669	+		CCNA_03387	0.24	+0.8
3,560,801	+		CCNA_03387	0.42	+1.0
3,560,820	+		CCNA_03387	0.45	-0.0
3,560,857	-		CCNA_03387	0.50	-1.4
3,560,872	-		CCNA_03387	0.52	-0.8
3,560,891	+		CCNA_03387	0.55	+1.9
3,560,914	-		CCNA_03387	0.58	-0.8
3,560,916	-		CCNA_03387	0.58	+0.5
3,560,954	-		CCNA_03387	0.64	-1.0
3,560,964	+		CCNA_03387	0.65	-1.0
3,560,972	-		CCNA_03387	0.66	-1.3
3,561,027	+		CCNA_03387	0.74	+1.3
3,561,027	+		CCNA_03387	0.74	+3.0
3,561,032	+		CCNA_03387	0.75	-1.7
3,561,032	+		CCNA_03387	0.75	+2.3
3,561,035	-		CCNA_03387	0.75	+1.5
3,561,035	-		CCNA_03387	0.75	+1.8
3,561,040	-		CCNA_03387	0.76	+0.3
3,561,040	-		CCNA_03387	0.76	-0.9
3,561,093	-		CCNA_03387	0.83	-0.3
3,561,118	-		CCNA_03387	0.87	-1.7
3,561,144	+				-1.0
3,561,146	+				+0.2
3,561,151	+				+1.5
3,561,151	+				-1.2
3,561,151	+				+1.0
3,561,152	-				+1.5
3,561,194	+				+2.5
3,561,201	-				+1.1
3,561,201	-				-0.8
3,561,202	-				-1.9
3,561,263	+				+1.5
3,561,263	+				-2.4
3,561,263	+				-1.5
3,561,271	-				-2.0
3,561,271	-				+0.3
3,561,271	-				+0.0
3,561,271	-				-2.0
3,561,311	-				+1.0
3,561,316	+				-1.1
3,561,324	+				+0.4
3,561,324	-				+1.5
3,561,324	-				+1.0
3,561,348	-		CCNA_03388	0.12	+0.5
3,561,353	+		CCNA_03388	0.12	-1.5
3,561,370	+		CCNA_03388	0.15	-1.7
3,561,370	+		CCNA_03388	0.15	-0.9
3,561,390	+		CCNA_03388	0.17	-0.4