Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00900

Experiment: PYE_noCalcium 25C survival rep1 28 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00899 and CCNA_00900 are separated by 198 nucleotidesCCNA_00900 and CCNA_00901 are separated by 269 nucleotides CCNA_00899: CCNA_00899 - bacterial peptide chain Release factor 1 (RF-1), at 977,024 to 978,094 _00899 CCNA_00900: CCNA_00900 - CHASE4-family GGDEF/EAL protein, at 978,293 to 980,500 _00900 CCNA_00901: CCNA_00901 - alpha/beta hydrolase family protein, at 980,770 to 981,606 _00901 Position (kb) 978 979 980 981Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 978.220 kb on + strandat 978.220 kb on + strandat 978.220 kb on + strandat 978.220 kb on + strandat 978.228 kb on - strandat 978.228 kb on - strandat 978.230 kb on + strandat 978.233 kb on - strandat 978.237 kb on + strandat 978.245 kb on - strandat 978.245 kb on - strandat 978.247 kb on + strandat 978.274 kb on + strandat 978.282 kb on - strandat 978.298 kb on - strandat 978.300 kb on + strandat 978.300 kb on - strandat 978.300 kb on - strandat 978.300 kb on - strandat 978.300 kb on - strandat 978.300 kb on - strandat 978.343 kb on + strandat 978.376 kb on - strandat 978.381 kb on - strandat 978.381 kb on - strandat 978.390 kb on - strandat 978.412 kb on - strandat 978.412 kb on - strandat 978.436 kb on + strandat 978.444 kb on - strandat 978.445 kb on + strandat 978.542 kb on + strandat 978.555 kb on + strand, within CCNA_00900at 978.563 kb on + strand, within CCNA_00900at 978.620 kb on - strand, within CCNA_00900at 978.630 kb on - strand, within CCNA_00900at 978.665 kb on - strand, within CCNA_00900at 978.706 kb on - strand, within CCNA_00900at 978.735 kb on + strand, within CCNA_00900at 978.748 kb on + strand, within CCNA_00900at 978.776 kb on + strand, within CCNA_00900at 978.781 kb on + strand, within CCNA_00900at 978.789 kb on - strand, within CCNA_00900at 978.789 kb on - strand, within CCNA_00900at 978.789 kb on - strand, within CCNA_00900at 978.811 kb on + strand, within CCNA_00900at 978.811 kb on + strand, within CCNA_00900at 978.811 kb on + strand, within CCNA_00900at 978.819 kb on - strand, within CCNA_00900at 978.819 kb on - strand, within CCNA_00900at 978.866 kb on + strand, within CCNA_00900at 978.886 kb on + strand, within CCNA_00900at 978.887 kb on - strand, within CCNA_00900at 978.926 kb on - strand, within CCNA_00900at 978.957 kb on - strand, within CCNA_00900at 978.959 kb on + strand, within CCNA_00900at 978.967 kb on + strand, within CCNA_00900at 978.967 kb on - strand, within CCNA_00900at 978.975 kb on - strand, within CCNA_00900at 978.990 kb on - strand, within CCNA_00900at 978.999 kb on + strand, within CCNA_00900at 978.999 kb on + strand, within CCNA_00900at 979.033 kb on - strand, within CCNA_00900at 979.033 kb on - strand, within CCNA_00900at 979.040 kb on + strand, within CCNA_00900at 979.040 kb on + strand, within CCNA_00900at 979.040 kb on + strand, within CCNA_00900at 979.045 kb on + strand, within CCNA_00900at 979.048 kb on - strand, within CCNA_00900at 979.053 kb on - strand, within CCNA_00900at 979.062 kb on + strand, within CCNA_00900at 979.081 kb on + strand, within CCNA_00900at 979.081 kb on + strand, within CCNA_00900at 979.095 kb on - strand, within CCNA_00900at 979.104 kb on + strand, within CCNA_00900at 979.172 kb on + strand, within CCNA_00900at 979.182 kb on + strand, within CCNA_00900at 979.185 kb on - strand, within CCNA_00900at 979.201 kb on + strand, within CCNA_00900at 979.201 kb on + strand, within CCNA_00900at 979.209 kb on - strand, within CCNA_00900at 979.209 kb on - strand, within CCNA_00900at 979.216 kb on - strand, within CCNA_00900at 979.216 kb on - strand, within CCNA_00900at 979.220 kb on + strand, within CCNA_00900at 979.220 kb on + strand, within CCNA_00900at 979.220 kb on - strand, within CCNA_00900at 979.234 kb on + strand, within CCNA_00900at 979.234 kb on + strand, within CCNA_00900at 979.234 kb on + strand, within CCNA_00900at 979.234 kb on + strand, within CCNA_00900at 979.310 kb on + strand, within CCNA_00900at 979.322 kb on + strandat 979.330 kb on - strandat 979.330 kb on - strand, within CCNA_00900at 979.332 kb on + strand, within CCNA_00900at 979.332 kb on + strand, within CCNA_00900at 979.333 kb on + strand, within CCNA_00900at 979.340 kb on - strand, within CCNA_00900at 979.341 kb on - strand, within CCNA_00900at 979.350 kb on - strand, within CCNA_00900at 979.512 kb on - strand, within CCNA_00900at 979.516 kb on + strand, within CCNA_00900at 979.541 kb on + strand, within CCNA_00900at 979.581 kb on + strand, within CCNA_00900at 979.621 kb on + strand, within CCNA_00900at 979.621 kb on + strand, within CCNA_00900at 979.649 kb on + strand, within CCNA_00900at 979.649 kb on + strand, within CCNA_00900at 979.660 kb on + strand, within CCNA_00900at 979.667 kb on + strand, within CCNA_00900at 979.700 kb on + strand, within CCNA_00900at 979.715 kb on + strand, within CCNA_00900at 979.782 kb on - strand, within CCNA_00900at 979.798 kb on + strand, within CCNA_00900at 979.825 kb on - strand, within CCNA_00900at 979.825 kb on - strand, within CCNA_00900at 979.832 kb on + strand, within CCNA_00900at 979.878 kb on + strand, within CCNA_00900at 979.895 kb on + strand, within CCNA_00900at 979.902 kb on + strand, within CCNA_00900at 979.903 kb on - strand, within CCNA_00900at 979.922 kb on - strand, within CCNA_00900at 979.973 kb on + strand, within CCNA_00900at 979.974 kb on + strand, within CCNA_00900at 979.981 kb on - strand, within CCNA_00900at 979.981 kb on - strand, within CCNA_00900at 979.993 kb on + strand, within CCNA_00900at 980.000 kb on + strand, within CCNA_00900at 980.048 kb on - strand, within CCNA_00900at 980.154 kb on + strandat 980.192 kb on + strand, within CCNA_00900at 980.192 kb on + strand, within CCNA_00900at 980.192 kb on + strand, within CCNA_00900at 980.236 kb on + strand, within CCNA_00900at 980.236 kb on + strand, within CCNA_00900at 980.244 kb on - strand, within CCNA_00900at 980.278 kb on + strand, within CCNA_00900at 980.282 kb on - strandat 980.282 kb on - strandat 980.284 kb on + strandat 980.324 kb on + strandat 980.332 kb on - strandat 980.338 kb on + strandat 980.361 kb on + strandat 980.402 kb on - strandat 980.405 kb on + strandat 980.494 kb on + strandat 980.502 kb on - strandat 980.502 kb on - strandat 980.538 kb on + strandat 980.546 kb on - strandat 980.577 kb on - strandat 980.590 kb on + strandat 980.608 kb on + strandat 980.632 kb on - strandat 980.820 kb on - strandat 980.822 kb on + strandat 980.822 kb on + strandat 980.822 kb on + strandat 980.822 kb on + strandat 980.847 kb on - strandat 980.869 kb on + strand, within CCNA_00901at 980.874 kb on + strand, within CCNA_00901at 980.883 kb on - strand, within CCNA_00901at 980.925 kb on + strand, within CCNA_00901at 980.971 kb on + strand, within CCNA_00901at 980.971 kb on + strand, within CCNA_00901at 980.971 kb on + strand, within CCNA_00901at 980.979 kb on - strand, within CCNA_00901at 980.979 kb on - strand, within CCNA_00901at 980.979 kb on - strand, within CCNA_00901at 980.979 kb on - strand, within CCNA_00901at 981.018 kb on + strand, within CCNA_00901at 981.024 kb on + strand, within CCNA_00901at 981.048 kb on + strand, within CCNA_00901at 981.056 kb on - strand, within CCNA_00901at 981.093 kb on - strand, within CCNA_00901at 981.102 kb on + strand, within CCNA_00901at 981.118 kb on + strand, within CCNA_00901at 981.128 kb on + strand, within CCNA_00901at 981.128 kb on + strand, within CCNA_00901at 981.128 kb on + strand, within CCNA_00901at 981.136 kb on - strand, within CCNA_00901at 981.136 kb on - strand, within CCNA_00901at 981.154 kb on + strand, within CCNA_00901at 981.155 kb on + strand, within CCNA_00901at 981.163 kb on - strand, within CCNA_00901at 981.200 kb on - strand, within CCNA_00901at 981.200 kb on - strand, within CCNA_00901at 981.223 kb on - strand, within CCNA_00901at 981.223 kb on - strand, within CCNA_00901at 981.223 kb on - strand, within CCNA_00901at 981.228 kb on - strand, within CCNA_00901at 981.317 kb on + strand, within CCNA_00901at 981.325 kb on - strand, within CCNA_00901at 981.325 kb on - strand, within CCNA_00901at 981.382 kb on - strand, within CCNA_00901at 981.386 kb on + strand, within CCNA_00901at 981.386 kb on + strand, within CCNA_00901at 981.401 kb on + strand, within CCNA_00901at 981.401 kb on + strand, within CCNA_00901at 981.401 kb on + strand, within CCNA_00901at 981.404 kb on - strand, within CCNA_00901at 981.406 kb on + strand, within CCNA_00901at 981.407 kb on - strand, within CCNA_00901at 981.409 kb on - strand, within CCNA_00901at 981.457 kb on - strand, within CCNA_00901at 981.488 kb on - strand, within CCNA_00901at 981.495 kb on + strand, within CCNA_00901

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE_noCalcium 25C survival rep1 28 days
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978,220 + -3.0
978,220 + +2.6
978,220 + -1.3
978,220 + -1.2
978,228 - -2.2
978,228 - -1.6
978,230 + +1.8
978,233 - +2.6
978,237 + +0.1
978,245 - -2.6
978,245 - +2.6
978,247 + -0.2
978,274 + -0.0
978,282 - -0.5
978,298 - +1.1
978,300 + +0.4
978,300 - +0.6
978,300 - -0.0
978,300 - +1.1
978,300 - +1.0
978,300 - +0.6
978,343 + +0.6
978,376 - -1.2
978,381 - -2.2
978,381 - -0.5
978,390 - +1.3
978,412 - -0.2
978,412 - -1.4
978,436 + -1.2
978,444 - +1.5
978,445 + +0.5
978,542 + +1.3
978,555 + CCNA_00900 0.12 +0.2
978,563 + CCNA_00900 0.12 +0.4
978,620 - CCNA_00900 0.15 -2.6
978,630 - CCNA_00900 0.15 -1.5
978,665 - CCNA_00900 0.17 -2.7
978,706 - CCNA_00900 0.19 -0.1
978,735 + CCNA_00900 0.20 -1.1
978,748 + CCNA_00900 0.21 -2.8
978,776 + CCNA_00900 0.22 +0.3
978,781 + CCNA_00900 0.22 -0.9
978,789 - CCNA_00900 0.22 +0.9
978,789 - CCNA_00900 0.22 +0.3
978,789 - CCNA_00900 0.22 +1.4
978,811 + CCNA_00900 0.23 -1.4
978,811 + CCNA_00900 0.23 +0.9
978,811 + CCNA_00900 0.23 -1.2
978,819 - CCNA_00900 0.24 -0.1
978,819 - CCNA_00900 0.24 -0.5
978,866 + CCNA_00900 0.26 -1.2
978,886 + CCNA_00900 0.27 +0.7
978,887 - CCNA_00900 0.27 -0.8
978,926 - CCNA_00900 0.29 +0.9
978,957 - CCNA_00900 0.30 -2.1
978,959 + CCNA_00900 0.30 +0.5
978,967 + CCNA_00900 0.31 +0.5
978,967 - CCNA_00900 0.31 -0.3
978,975 - CCNA_00900 0.31 +0.3
978,990 - CCNA_00900 0.32 -0.5
978,999 + CCNA_00900 0.32 +0.2
978,999 + CCNA_00900 0.32 +0.7
979,033 - CCNA_00900 0.34 +1.3
979,033 - CCNA_00900 0.34 -0.8
979,040 + CCNA_00900 0.34 +0.3
979,040 + CCNA_00900 0.34 +2.4
979,040 + CCNA_00900 0.34 -0.6
979,045 + CCNA_00900 0.34 +0.7
979,048 - CCNA_00900 0.34 -0.5
979,053 - CCNA_00900 0.34 -1.6
979,062 + CCNA_00900 0.35 -0.9
979,081 + CCNA_00900 0.36 +0.5
979,081 + CCNA_00900 0.36 +0.5
979,095 - CCNA_00900 0.36 -0.4
979,104 + CCNA_00900 0.37 +0.8
979,172 + CCNA_00900 0.40 +0.1
979,182 + CCNA_00900 0.40 +1.1
979,185 - CCNA_00900 0.40 -1.0
979,201 + CCNA_00900 0.41 +0.4
979,201 + CCNA_00900 0.41 -0.1
979,209 - CCNA_00900 0.41 +1.3
979,209 - CCNA_00900 0.41 -0.4
979,216 - CCNA_00900 0.42 +0.6
979,216 - CCNA_00900 0.42 +1.6
979,220 + CCNA_00900 0.42 -0.8
979,220 + CCNA_00900 0.42 +0.3
979,220 - CCNA_00900 0.42 -1.9
979,234 + CCNA_00900 0.43 -2.1
979,234 + CCNA_00900 0.43 +0.6
979,234 + CCNA_00900 0.43 +1.9
979,234 + CCNA_00900 0.43 +1.6
979,310 + CCNA_00900 0.46 -0.6
979,322 + +0.8
979,330 - +0.3
979,330 - CCNA_00900 0.47 +1.1
979,332 + CCNA_00900 0.47 +0.5
979,332 + CCNA_00900 0.47 +0.9
979,333 + CCNA_00900 0.47 +0.6
979,340 - CCNA_00900 0.47 -0.0
979,341 - CCNA_00900 0.47 +2.1
979,350 - CCNA_00900 0.48 -1.8
979,512 - CCNA_00900 0.55 -0.1
979,516 + CCNA_00900 0.55 -0.4
979,541 + CCNA_00900 0.57 -1.8
979,581 + CCNA_00900 0.58 -1.2
979,621 + CCNA_00900 0.60 +0.2
979,621 + CCNA_00900 0.60 -0.2
979,649 + CCNA_00900 0.61 -0.4
979,649 + CCNA_00900 0.61 +0.7
979,660 + CCNA_00900 0.62 -1.8
979,667 + CCNA_00900 0.62 +0.3
979,700 + CCNA_00900 0.64 +0.1
979,715 + CCNA_00900 0.64 -0.2
979,782 - CCNA_00900 0.67 -1.2
979,798 + CCNA_00900 0.68 +1.1
979,825 - CCNA_00900 0.69 +0.8
979,825 - CCNA_00900 0.69 +0.6
979,832 + CCNA_00900 0.70 -0.9
979,878 + CCNA_00900 0.72 -0.8
979,895 + CCNA_00900 0.73 +0.1
979,902 + CCNA_00900 0.73 +0.5
979,903 - CCNA_00900 0.73 +0.5
979,922 - CCNA_00900 0.74 -0.5
979,973 + CCNA_00900 0.76 -2.7
979,974 + CCNA_00900 0.76 +1.4
979,981 - CCNA_00900 0.76 +1.6
979,981 - CCNA_00900 0.76 -1.5
979,993 + CCNA_00900 0.77 +1.1
980,000 + CCNA_00900 0.77 -0.9
980,048 - CCNA_00900 0.79 -1.5
980,154 + +0.1
980,192 + CCNA_00900 0.86 -3.1
980,192 + CCNA_00900 0.86 +1.1
980,192 + CCNA_00900 0.86 -1.1
980,236 + CCNA_00900 0.88 +1.1
980,236 + CCNA_00900 0.88 +1.2
980,244 - CCNA_00900 0.88 -3.1
980,278 + CCNA_00900 0.90 +0.9
980,282 - +2.6
980,282 - +0.1
980,284 + -3.7
980,324 + +1.0
980,332 - +0.3
980,338 + +0.4
980,361 + -0.5
980,402 - -0.2
980,405 + +0.3
980,494 + -0.0
980,502 - +0.3
980,502 - +2.4
980,538 + +0.6
980,546 - +1.4
980,577 - -0.7
980,590 + -0.1
980,608 + -1.2
980,632 - +1.2
980,820 - -0.7
980,822 + +0.2
980,822 + -2.7
980,822 + -0.7
980,822 + +0.1
980,847 - +0.9
980,869 + CCNA_00901 0.12 +1.2
980,874 + CCNA_00901 0.12 -0.7
980,883 - CCNA_00901 0.14 +1.4
980,925 + CCNA_00901 0.19 -0.7
980,971 + CCNA_00901 0.24 +0.2
980,971 + CCNA_00901 0.24 -0.8
980,971 + CCNA_00901 0.24 +1.2
980,979 - CCNA_00901 0.25 +1.1
980,979 - CCNA_00901 0.25 -1.0
980,979 - CCNA_00901 0.25 +0.5
980,979 - CCNA_00901 0.25 +0.7
981,018 + CCNA_00901 0.30 -1.1
981,024 + CCNA_00901 0.30 -1.4
981,048 + CCNA_00901 0.33 +0.3
981,056 - CCNA_00901 0.34 +0.7
981,093 - CCNA_00901 0.39 -1.4
981,102 + CCNA_00901 0.40 +3.2
981,118 + CCNA_00901 0.42 -0.3
981,128 + CCNA_00901 0.43 -1.9
981,128 + CCNA_00901 0.43 -2.3
981,128 + CCNA_00901 0.43 +2.6
981,136 - CCNA_00901 0.44 -2.4
981,136 - CCNA_00901 0.44 +1.3
981,154 + CCNA_00901 0.46 -2.8
981,155 + CCNA_00901 0.46 -1.7
981,163 - CCNA_00901 0.47 -0.5
981,200 - CCNA_00901 0.51 +1.4
981,200 - CCNA_00901 0.51 -0.8
981,223 - CCNA_00901 0.54 +0.4
981,223 - CCNA_00901 0.54 -0.3
981,223 - CCNA_00901 0.54 +1.0
981,228 - CCNA_00901 0.55 +0.6
981,317 + CCNA_00901 0.65 +0.5
981,325 - CCNA_00901 0.66 +1.4
981,325 - CCNA_00901 0.66 +0.9
981,382 - CCNA_00901 0.73 +0.2
981,386 + CCNA_00901 0.74 -1.3
981,386 + CCNA_00901 0.74 -1.0
981,401 + CCNA_00901 0.75 -2.7
981,401 + CCNA_00901 0.75 +0.1
981,401 + CCNA_00901 0.75 -0.8
981,404 - CCNA_00901 0.76 -0.0
981,406 + CCNA_00901 0.76 +0.0
981,407 - CCNA_00901 0.76 +1.0
981,409 - CCNA_00901 0.76 +0.6
981,457 - CCNA_00901 0.82 +0.9
981,488 - CCNA_00901 0.86 +0.9
981,495 + CCNA_00901 0.87 -2.1

Or see this region's nucleotide sequence