Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00251

Experiment: PYE_noCalcium 25C survival rep1 28 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00250 and CCNA_00251 are separated by 48 nucleotidesCCNA_00251 and CCNA_00252 are separated by 111 nucleotides CCNA_00250: CCNA_00250 - poly(3-hydroxyalkanoate) depolymerase, at 261,642 to 262,904 _00250 CCNA_00251: CCNA_00251 - zinc metalloprotease, at 262,953 to 263,672 _00251 CCNA_00252: CCNA_00252 - multimodular transpeptidase-transglycosylase PbpX, at 263,784 to 265,745 _00252 Position (kb) 262 263 264Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 261.962 kb on + strand, within CCNA_00250at 261.982 kb on - strand, within CCNA_00250at 261.999 kb on - strand, within CCNA_00250at 262.024 kb on - strand, within CCNA_00250at 262.025 kb on + strand, within CCNA_00250at 262.026 kb on + strand, within CCNA_00250at 262.026 kb on + strand, within CCNA_00250at 262.026 kb on + strand, within CCNA_00250at 262.034 kb on - strand, within CCNA_00250at 262.034 kb on - strand, within CCNA_00250at 262.045 kb on + strand, within CCNA_00250at 262.118 kb on + strand, within CCNA_00250at 262.123 kb on + strand, within CCNA_00250at 262.159 kb on + strand, within CCNA_00250at 262.164 kb on + strand, within CCNA_00250at 262.172 kb on + strand, within CCNA_00250at 262.271 kb on - strand, within CCNA_00250at 262.317 kb on - strand, within CCNA_00250at 262.412 kb on - strand, within CCNA_00250at 262.447 kb on - strand, within CCNA_00250at 262.465 kb on - strand, within CCNA_00250at 262.529 kb on + strand, within CCNA_00250at 262.537 kb on - strand, within CCNA_00250at 262.571 kb on + strand, within CCNA_00250at 262.624 kb on - strand, within CCNA_00250at 262.654 kb on + strand, within CCNA_00250at 262.654 kb on + strand, within CCNA_00250at 262.657 kb on - strand, within CCNA_00250at 262.667 kb on + strand, within CCNA_00250at 262.680 kb on - strand, within CCNA_00250at 262.685 kb on - strand, within CCNA_00250at 262.695 kb on + strand, within CCNA_00250at 262.722 kb on + strand, within CCNA_00250at 262.722 kb on + strand, within CCNA_00250at 262.722 kb on + strand, within CCNA_00250at 262.722 kb on + strand, within CCNA_00250at 262.727 kb on + strand, within CCNA_00250at 262.727 kb on + strand, within CCNA_00250at 262.730 kb on - strand, within CCNA_00250at 262.735 kb on - strand, within CCNA_00250at 262.735 kb on - strand, within CCNA_00250at 262.735 kb on - strand, within CCNA_00250at 262.769 kb on + strand, within CCNA_00250at 262.778 kb on + strandat 262.791 kb on - strandat 262.814 kb on + strandat 262.849 kb on - strandat 262.906 kb on - strandat 262.923 kb on - strandat 262.950 kb on - strandat 262.950 kb on - strandat 262.968 kb on + strandat 262.968 kb on + strandat 263.016 kb on + strandat 263.021 kb on + strandat 263.029 kb on - strand, within CCNA_00251at 263.069 kb on + strand, within CCNA_00251at 263.074 kb on + strand, within CCNA_00251at 263.095 kb on + strand, within CCNA_00251at 263.101 kb on + strand, within CCNA_00251at 263.101 kb on - strand, within CCNA_00251at 263.146 kb on - strand, within CCNA_00251at 263.204 kb on - strand, within CCNA_00251at 263.216 kb on - strand, within CCNA_00251at 263.294 kb on - strand, within CCNA_00251at 263.316 kb on - strand, within CCNA_00251at 263.333 kb on + strand, within CCNA_00251at 263.340 kb on + strand, within CCNA_00251at 263.340 kb on + strand, within CCNA_00251at 263.348 kb on - strand, within CCNA_00251at 263.373 kb on - strand, within CCNA_00251at 263.382 kb on + strand, within CCNA_00251at 263.382 kb on + strand, within CCNA_00251at 263.382 kb on + strand, within CCNA_00251at 263.383 kb on + strand, within CCNA_00251at 263.390 kb on - strand, within CCNA_00251at 263.446 kb on + strand, within CCNA_00251at 263.455 kb on - strand, within CCNA_00251at 263.530 kb on + strand, within CCNA_00251at 263.547 kb on + strand, within CCNA_00251at 263.552 kb on + strand, within CCNA_00251at 263.555 kb on - strand, within CCNA_00251at 263.576 kb on + strand, within CCNA_00251at 263.578 kb on + strand, within CCNA_00251at 263.665 kb on + strandat 263.698 kb on + strandat 263.711 kb on - strandat 263.718 kb on - strandat 263.720 kb on + strandat 263.728 kb on - strandat 263.728 kb on - strandat 263.732 kb on + strandat 263.736 kb on + strandat 263.739 kb on - strandat 263.759 kb on + strandat 263.768 kb on - strandat 263.785 kb on - strandat 263.790 kb on - strandat 263.806 kb on - strandat 263.834 kb on - strandat 263.889 kb on - strandat 263.904 kb on - strandat 263.935 kb on + strandat 263.967 kb on - strandat 263.971 kb on + strandat 263.971 kb on + strandat 263.971 kb on + strandat 263.971 kb on + strandat 264.025 kb on - strand, within CCNA_00252at 264.027 kb on + strand, within CCNA_00252at 264.030 kb on - strand, within CCNA_00252at 264.035 kb on - strand, within CCNA_00252at 264.035 kb on - strand, within CCNA_00252at 264.036 kb on + strand, within CCNA_00252at 264.036 kb on + strand, within CCNA_00252at 264.085 kb on + strand, within CCNA_00252at 264.093 kb on - strand, within CCNA_00252at 264.093 kb on - strand, within CCNA_00252at 264.200 kb on + strand, within CCNA_00252at 264.213 kb on + strand, within CCNA_00252at 264.241 kb on + strand, within CCNA_00252at 264.253 kb on + strand, within CCNA_00252at 264.261 kb on - strand, within CCNA_00252at 264.261 kb on - strand, within CCNA_00252at 264.265 kb on - strand, within CCNA_00252at 264.290 kb on - strand, within CCNA_00252at 264.300 kb on - strand, within CCNA_00252at 264.300 kb on - strand, within CCNA_00252at 264.329 kb on + strand, within CCNA_00252at 264.329 kb on - strand, within CCNA_00252at 264.331 kb on + strand, within CCNA_00252at 264.336 kb on + strand, within CCNA_00252at 264.372 kb on + strand, within CCNA_00252at 264.397 kb on - strand, within CCNA_00252at 264.421 kb on - strand, within CCNA_00252at 264.436 kb on - strand, within CCNA_00252at 264.495 kb on + strand, within CCNA_00252at 264.495 kb on + strand, within CCNA_00252at 264.512 kb on + strand, within CCNA_00252at 264.520 kb on + strand, within CCNA_00252at 264.520 kb on - strand, within CCNA_00252at 264.582 kb on - strand, within CCNA_00252

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE_noCalcium 25C survival rep1 28 days
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261,962 + CCNA_00250 0.25 -0.6
261,982 - CCNA_00250 0.27 -0.8
261,999 - CCNA_00250 0.28 -2.8
262,024 - CCNA_00250 0.30 -2.5
262,025 + CCNA_00250 0.30 -0.8
262,026 + CCNA_00250 0.30 -1.9
262,026 + CCNA_00250 0.30 -2.7
262,026 + CCNA_00250 0.30 -2.7
262,034 - CCNA_00250 0.31 +0.2
262,034 - CCNA_00250 0.31 -2.5
262,045 + CCNA_00250 0.32 +1.1
262,118 + CCNA_00250 0.38 -1.5
262,123 + CCNA_00250 0.38 -0.9
262,159 + CCNA_00250 0.41 -3.4
262,164 + CCNA_00250 0.41 +0.9
262,172 + CCNA_00250 0.42 -2.0
262,271 - CCNA_00250 0.50 +0.2
262,317 - CCNA_00250 0.53 +1.5
262,412 - CCNA_00250 0.61 +0.9
262,447 - CCNA_00250 0.64 -1.8
262,465 - CCNA_00250 0.65 -0.1
262,529 + CCNA_00250 0.70 -2.3
262,537 - CCNA_00250 0.71 -0.3
262,571 + CCNA_00250 0.74 +2.0
262,624 - CCNA_00250 0.78 -2.3
262,654 + CCNA_00250 0.80 -1.4
262,654 + CCNA_00250 0.80 -2.2
262,657 - CCNA_00250 0.80 -1.5
262,667 + CCNA_00250 0.81 -1.4
262,680 - CCNA_00250 0.82 +2.5
262,685 - CCNA_00250 0.83 -1.2
262,695 + CCNA_00250 0.83 -2.1
262,722 + CCNA_00250 0.86 -1.7
262,722 + CCNA_00250 0.86 -1.7
262,722 + CCNA_00250 0.86 -3.0
262,722 + CCNA_00250 0.86 -1.6
262,727 + CCNA_00250 0.86 -1.5
262,727 + CCNA_00250 0.86 -1.5
262,730 - CCNA_00250 0.86 +0.2
262,735 - CCNA_00250 0.87 -1.7
262,735 - CCNA_00250 0.87 -1.5
262,735 - CCNA_00250 0.87 -1.1
262,769 + CCNA_00250 0.89 -2.5
262,778 + -2.6
262,791 - -0.9
262,814 + -0.7
262,849 - -1.2
262,906 - +0.0
262,923 - +0.2
262,950 - -0.9
262,950 - +0.1
262,968 + +0.9
262,968 + +2.2
263,016 + +2.0
263,021 + -0.9
263,029 - CCNA_00251 0.11 +0.6
263,069 + CCNA_00251 0.16 +2.2
263,074 + CCNA_00251 0.17 -0.3
263,095 + CCNA_00251 0.20 +0.2
263,101 + CCNA_00251 0.21 +0.2
263,101 - CCNA_00251 0.21 -2.8
263,146 - CCNA_00251 0.27 -0.6
263,204 - CCNA_00251 0.35 -0.8
263,216 - CCNA_00251 0.37 -1.4
263,294 - CCNA_00251 0.47 -1.2
263,316 - CCNA_00251 0.50 -0.9
263,333 + CCNA_00251 0.53 -1.1
263,340 + CCNA_00251 0.54 +0.4
263,340 + CCNA_00251 0.54 -1.1
263,348 - CCNA_00251 0.55 +0.5
263,373 - CCNA_00251 0.58 -0.1
263,382 + CCNA_00251 0.60 +1.1
263,382 + CCNA_00251 0.60 -0.8
263,382 + CCNA_00251 0.60 -0.2
263,383 + CCNA_00251 0.60 +0.9
263,390 - CCNA_00251 0.61 +0.3
263,446 + CCNA_00251 0.68 +1.2
263,455 - CCNA_00251 0.70 -0.9
263,530 + CCNA_00251 0.80 -0.9
263,547 + CCNA_00251 0.82 -0.5
263,552 + CCNA_00251 0.83 +0.1
263,555 - CCNA_00251 0.84 -1.9
263,576 + CCNA_00251 0.87 -1.5
263,578 + CCNA_00251 0.87 -0.1
263,665 + -0.1
263,698 + +0.9
263,711 - +0.9
263,718 - -1.3
263,720 + -1.7
263,728 - +1.5
263,728 - +0.1
263,732 + +1.5
263,736 + +0.7
263,739 - +0.1
263,759 + -0.5
263,768 - +1.5
263,785 - +1.2
263,790 - -0.1
263,806 - +1.1
263,834 - -0.2
263,889 - -2.8
263,904 - -1.1
263,935 + -0.3
263,967 - -0.8
263,971 + +0.5
263,971 + +0.9
263,971 + -0.9
263,971 + +1.5
264,025 - CCNA_00252 0.12 -0.1
264,027 + CCNA_00252 0.12 -0.3
264,030 - CCNA_00252 0.13 +2.5
264,035 - CCNA_00252 0.13 -3.1
264,035 - CCNA_00252 0.13 -2.5
264,036 + CCNA_00252 0.13 -1.9
264,036 + CCNA_00252 0.13 +0.2
264,085 + CCNA_00252 0.15 -0.9
264,093 - CCNA_00252 0.16 -1.1
264,093 - CCNA_00252 0.16 -2.4
264,200 + CCNA_00252 0.21 +0.2
264,213 + CCNA_00252 0.22 +0.2
264,241 + CCNA_00252 0.23 -1.5
264,253 + CCNA_00252 0.24 +0.5
264,261 - CCNA_00252 0.24 -1.3
264,261 - CCNA_00252 0.24 -1.6
264,265 - CCNA_00252 0.25 -1.3
264,290 - CCNA_00252 0.26 +0.5
264,300 - CCNA_00252 0.26 -1.1
264,300 - CCNA_00252 0.26 -2.7
264,329 + CCNA_00252 0.28 -1.5
264,329 - CCNA_00252 0.28 -0.1
264,331 + CCNA_00252 0.28 -1.5
264,336 + CCNA_00252 0.28 +0.2
264,372 + CCNA_00252 0.30 +2.1
264,397 - CCNA_00252 0.31 -0.8
264,421 - CCNA_00252 0.32 +0.9
264,436 - CCNA_00252 0.33 +0.5
264,495 + CCNA_00252 0.36 -1.7
264,495 + CCNA_00252 0.36 -2.2
264,512 + CCNA_00252 0.37 -1.4
264,520 + CCNA_00252 0.38 +0.2
264,520 - CCNA_00252 0.38 -1.1
264,582 - CCNA_00252 0.41 -3.6

Or see this region's nucleotide sequence