Experiment: PYE_noCalcium 25C survival rep1 28 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00023 and CCNA_00024 are separated by 16 nucleotides CCNA_00024 and CCNA_00025 are separated by 9 nucleotides CCNA_00025 and CCNA_00026 are separated by 57 nucleotides
CCNA_00023: CCNA_00023 - putative periplasmic protein, at 23,742 to 24,074
_00023
CCNA_00024: CCNA_00024 - uroporphyrin-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase, at 24,091 to 24,981
_00024
CCNA_00025: CCNA_00025 - major facilitator superfamily transporter, at 24,991 to 26,643
_00025
CCNA_00026: CCNA_00026 - PAS-family sensor histidine kinase, at 26,701 to 29,403
_00026
Position (kb) 24
25
26
27 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 23.993 kb on + strand, within CCNA_00023 at 24.001 kb on - strand, within CCNA_00023 at 24.019 kb on - strand, within CCNA_00023 at 24.020 kb on - strand, within CCNA_00023 at 24.041 kb on - strand at 24.075 kb on + strand at 24.083 kb on - strand at 24.165 kb on + strand at 24.240 kb on + strand, within CCNA_00024 at 24.283 kb on - strand, within CCNA_00024 at 24.322 kb on + strand, within CCNA_00024 at 24.322 kb on + strand, within CCNA_00024 at 24.328 kb on - strand, within CCNA_00024 at 24.358 kb on - strand, within CCNA_00024 at 24.443 kb on + strand, within CCNA_00024 at 24.444 kb on - strand, within CCNA_00024 at 24.492 kb on - strand, within CCNA_00024 at 24.492 kb on - strand, within CCNA_00024 at 24.516 kb on + strand, within CCNA_00024 at 24.516 kb on + strand, within CCNA_00024 at 24.524 kb on - strand, within CCNA_00024 at 24.531 kb on + strand, within CCNA_00024 at 24.531 kb on + strand, within CCNA_00024 at 24.531 kb on + strand, within CCNA_00024 at 24.563 kb on + strand, within CCNA_00024 at 24.629 kb on + strand, within CCNA_00024 at 24.660 kb on - strand, within CCNA_00024 at 24.666 kb on - strand, within CCNA_00024 at 24.675 kb on + strand, within CCNA_00024 at 24.698 kb on - strand, within CCNA_00024 at 24.795 kb on + strand, within CCNA_00024 at 24.848 kb on + strand, within CCNA_00024 at 24.856 kb on - strand, within CCNA_00024 at 24.857 kb on + strand, within CCNA_00024 at 24.920 kb on - strand at 24.925 kb on + strand at 24.932 kb on + strand at 24.936 kb on + strand at 24.940 kb on - strand at 24.942 kb on + strand at 24.969 kb on - strand at 24.978 kb on - strand at 25.013 kb on + strand at 25.016 kb on - strand at 25.043 kb on + strand at 25.048 kb on + strand at 25.053 kb on + strand at 25.060 kb on + strand at 25.061 kb on - strand at 25.061 kb on - strand at 25.075 kb on - strand at 25.082 kb on + strand at 25.082 kb on + strand at 25.082 kb on + strand at 25.090 kb on - strand at 25.117 kb on + strand at 25.123 kb on + strand at 25.126 kb on - strand at 25.128 kb on + strand at 25.128 kb on + strand at 25.135 kb on + strand at 25.160 kb on + strand, within CCNA_00025 at 25.168 kb on - strand, within CCNA_00025 at 25.171 kb on + strand, within CCNA_00025 at 25.171 kb on + strand, within CCNA_00025 at 25.176 kb on + strand, within CCNA_00025 at 25.179 kb on - strand, within CCNA_00025 at 25.179 kb on - strand, within CCNA_00025 at 25.179 kb on - strand, within CCNA_00025 at 25.179 kb on - strand, within CCNA_00025 at 25.184 kb on - strand, within CCNA_00025 at 25.184 kb on - strand, within CCNA_00025 at 25.204 kb on + strand, within CCNA_00025 at 25.204 kb on + strand, within CCNA_00025 at 25.204 kb on - strand, within CCNA_00025 at 25.215 kb on + strand, within CCNA_00025 at 25.229 kb on + strand, within CCNA_00025 at 25.237 kb on - strand, within CCNA_00025 at 25.242 kb on - strand, within CCNA_00025 at 25.261 kb on + strand, within CCNA_00025 at 25.261 kb on + strand, within CCNA_00025 at 25.274 kb on + strand, within CCNA_00025 at 25.289 kb on + strand, within CCNA_00025 at 25.304 kb on + strand, within CCNA_00025 at 25.310 kb on + strand, within CCNA_00025 at 25.343 kb on + strand, within CCNA_00025 at 25.351 kb on - strand, within CCNA_00025 at 25.351 kb on - strand, within CCNA_00025 at 25.362 kb on - strand, within CCNA_00025 at 25.369 kb on - strand, within CCNA_00025 at 25.382 kb on + strand, within CCNA_00025 at 25.384 kb on - strand, within CCNA_00025 at 25.398 kb on + strand, within CCNA_00025 at 25.398 kb on + strand, within CCNA_00025 at 25.406 kb on - strand, within CCNA_00025 at 25.422 kb on - strand, within CCNA_00025 at 25.425 kb on - strand, within CCNA_00025 at 25.501 kb on - strand, within CCNA_00025 at 25.505 kb on - strand, within CCNA_00025 at 25.521 kb on + strand, within CCNA_00025 at 25.561 kb on - strand, within CCNA_00025 at 25.606 kb on - strand, within CCNA_00025 at 25.631 kb on + strand, within CCNA_00025 at 25.653 kb on + strand, within CCNA_00025 at 25.686 kb on + strand, within CCNA_00025 at 25.834 kb on + strand, within CCNA_00025 at 25.842 kb on - strand, within CCNA_00025 at 25.858 kb on + strand, within CCNA_00025 at 25.910 kb on + strand, within CCNA_00025 at 25.929 kb on + strand, within CCNA_00025 at 25.937 kb on - strand, within CCNA_00025 at 25.961 kb on - strand, within CCNA_00025 at 25.975 kb on - strand, within CCNA_00025 at 25.983 kb on + strand, within CCNA_00025 at 26.002 kb on + strand, within CCNA_00025 at 26.015 kb on - strand, within CCNA_00025 at 26.015 kb on - strand, within CCNA_00025 at 26.032 kb on + strand, within CCNA_00025 at 26.040 kb on - strand, within CCNA_00025 at 26.040 kb on - strand, within CCNA_00025 at 26.040 kb on - strand, within CCNA_00025 at 26.040 kb on - strand, within CCNA_00025 at 26.144 kb on + strand, within CCNA_00025 at 26.152 kb on - strand, within CCNA_00025 at 26.154 kb on + strand, within CCNA_00025 at 26.175 kb on + strand, within CCNA_00025 at 26.178 kb on + strand, within CCNA_00025 at 26.178 kb on + strand, within CCNA_00025 at 26.178 kb on + strand, within CCNA_00025 at 26.178 kb on - strand, within CCNA_00025 at 26.266 kb on + strand, within CCNA_00025 at 26.266 kb on + strand, within CCNA_00025 at 26.268 kb on + strand, within CCNA_00025 at 26.268 kb on + strand, within CCNA_00025 at 26.274 kb on - strand, within CCNA_00025 at 26.274 kb on - strand, within CCNA_00025 at 26.274 kb on - strand, within CCNA_00025 at 26.276 kb on - strand, within CCNA_00025 at 26.286 kb on - strand, within CCNA_00025 at 26.317 kb on - strand, within CCNA_00025 at 26.319 kb on + strand, within CCNA_00025 at 26.319 kb on + strand, within CCNA_00025 at 26.352 kb on - strand, within CCNA_00025 at 26.391 kb on - strand, within CCNA_00025 at 26.392 kb on - strand, within CCNA_00025 at 26.435 kb on - strand, within CCNA_00025 at 26.500 kb on + strand at 26.500 kb on + strand at 26.508 kb on - strand at 26.527 kb on - strand at 26.530 kb on + strand at 26.593 kb on - strand at 26.623 kb on + strand at 26.631 kb on - strand at 26.660 kb on - strand at 26.668 kb on + strand at 26.668 kb on + strand at 26.678 kb on + strand at 26.678 kb on + strand at 26.678 kb on + strand at 26.686 kb on - strand at 26.686 kb on - strand at 26.693 kb on - strand at 26.698 kb on + strand at 26.698 kb on + strand at 26.698 kb on + strand at 26.716 kb on + strand at 26.729 kb on - strand at 26.732 kb on + strand at 26.735 kb on - strand at 26.740 kb on - strand at 26.797 kb on + strand at 26.805 kb on - strand at 26.896 kb on + strand at 26.909 kb on + strand at 26.918 kb on - strand at 26.944 kb on + strand at 26.945 kb on + strand at 26.955 kb on + strand at 26.963 kb on - strand at 26.986 kb on - strand, within CCNA_00026 at 27.030 kb on + strand, within CCNA_00026 at 27.030 kb on + strand, within CCNA_00026 at 27.030 kb on + strand, within CCNA_00026 at 27.095 kb on - strand, within CCNA_00026 at 27.095 kb on - strand, within CCNA_00026 at 27.105 kb on + strand, within CCNA_00026 at 27.105 kb on - strand, within CCNA_00026 at 27.114 kb on - strand, within CCNA_00026 at 27.192 kb on - strand, within CCNA_00026 at 27.212 kb on + strand, within CCNA_00026 at 27.215 kb on - strand, within CCNA_00026 at 27.238 kb on - strand, within CCNA_00026 at 27.250 kb on + strand, within CCNA_00026 at 27.250 kb on + strand, within CCNA_00026 at 27.250 kb on + strand, within CCNA_00026 at 27.258 kb on - strand, within CCNA_00026 at 27.258 kb on - strand, within CCNA_00026 at 27.258 kb on - strand, within CCNA_00026 at 27.258 kb on - strand, within CCNA_00026 at 27.258 kb on - strand, within CCNA_00026 at 27.385 kb on - strand, within CCNA_00026 at 27.386 kb on - strand, within CCNA_00026 at 27.423 kb on + strand, within CCNA_00026 at 27.444 kb on - strand, within CCNA_00026 at 27.501 kb on + strand, within CCNA_00026 at 27.597 kb on + strand, within CCNA_00026 at 27.613 kb on + strand, within CCNA_00026 at 27.613 kb on + strand, within CCNA_00026 at 27.621 kb on - strand, within CCNA_00026 at 27.626 kb on - strand, within CCNA_00026 at 27.626 kb on - strand, within CCNA_00026 at 27.626 kb on - strand, within CCNA_00026
Per-strain Table
Position Strand Gene LocusTag Fraction PYE_noCalcium 25C survival rep1 28 days remove 23,993 + CCNA_00023 0.75 +0.2 24,001 - CCNA_00023 0.78 +3.6 24,019 - CCNA_00023 0.83 +0.7 24,020 - CCNA_00023 0.83 -1.5 24,041 - +0.2 24,075 + -0.2 24,083 - -0.1 24,165 + -0.3 24,240 + CCNA_00024 0.17 -0.4 24,283 - CCNA_00024 0.22 -1.5 24,322 + CCNA_00024 0.26 +1.6 24,322 + CCNA_00024 0.26 -0.4 24,328 - CCNA_00024 0.27 -0.8 24,358 - CCNA_00024 0.30 -0.0 24,443 + CCNA_00024 0.40 -0.1 24,444 - CCNA_00024 0.40 +4.1 24,492 - CCNA_00024 0.45 +1.0 24,492 - CCNA_00024 0.45 -0.8 24,516 + CCNA_00024 0.48 -1.1 24,516 + CCNA_00024 0.48 -1.8 24,524 - CCNA_00024 0.49 +1.8 24,531 + CCNA_00024 0.49 -0.1 24,531 + CCNA_00024 0.49 +1.0 24,531 + CCNA_00024 0.49 +0.7 24,563 + CCNA_00024 0.53 -1.7 24,629 + CCNA_00024 0.60 +0.7 24,660 - CCNA_00024 0.64 -0.8 24,666 - CCNA_00024 0.65 +1.0 24,675 + CCNA_00024 0.66 -0.3 24,698 - CCNA_00024 0.68 +0.9 24,795 + CCNA_00024 0.79 +1.0 24,848 + CCNA_00024 0.85 +1.0 24,856 - CCNA_00024 0.86 -0.6 24,857 + CCNA_00024 0.86 +1.5 24,920 - -0.9 24,925 + +0.3 24,932 + +2.6 24,936 + +0.6 24,940 - +1.3 24,942 + +1.4 24,969 - +0.2 24,978 - +0.8 25,013 + -1.6 25,016 - +4.1 25,043 + -1.2 25,048 + -2.8 25,053 + +1.4 25,060 + +0.1 25,061 - -2.5 25,061 - -0.4 25,075 - -0.1 25,082 + -1.5 25,082 + -2.0 25,082 + -1.5 25,090 - -1.7 25,117 + -2.4 25,123 + -1.9 25,126 - -0.2 25,128 + +0.6 25,128 + -0.4 25,135 + +0.1 25,160 + CCNA_00025 0.10 -1.7 25,168 - CCNA_00025 0.11 -1.0 25,171 + CCNA_00025 0.11 -2.8 25,171 + CCNA_00025 0.11 +0.2 25,176 + CCNA_00025 0.11 -1.9 25,179 - CCNA_00025 0.11 -1.8 25,179 - CCNA_00025 0.11 -0.3 25,179 - CCNA_00025 0.11 -1.8 25,179 - CCNA_00025 0.11 -3.6 25,184 - CCNA_00025 0.12 -1.1 25,184 - CCNA_00025 0.12 -2.0 25,204 + CCNA_00025 0.13 +2.6 25,204 + CCNA_00025 0.13 -1.0 25,204 - CCNA_00025 0.13 +0.6 25,215 + CCNA_00025 0.14 +2.6 25,229 + CCNA_00025 0.14 -0.8 25,237 - CCNA_00025 0.15 -1.3 25,242 - CCNA_00025 0.15 -0.2 25,261 + CCNA_00025 0.16 -2.1 25,261 + CCNA_00025 0.16 +1.6 25,274 + CCNA_00025 0.17 -1.8 25,289 + CCNA_00025 0.18 -0.9 25,304 + CCNA_00025 0.19 +1.2 25,310 + CCNA_00025 0.19 -2.1 25,343 + CCNA_00025 0.21 -2.4 25,351 - CCNA_00025 0.22 -3.0 25,351 - CCNA_00025 0.22 -0.9 25,362 - CCNA_00025 0.22 -2.2 25,369 - CCNA_00025 0.23 -3.3 25,382 + CCNA_00025 0.24 -2.3 25,384 - CCNA_00025 0.24 -1.3 25,398 + CCNA_00025 0.25 -1.6 25,398 + CCNA_00025 0.25 -0.8 25,406 - CCNA_00025 0.25 -1.0 25,422 - CCNA_00025 0.26 -0.3 25,425 - CCNA_00025 0.26 -0.9 25,501 - CCNA_00025 0.31 -0.8 25,505 - CCNA_00025 0.31 -0.6 25,521 + CCNA_00025 0.32 -1.5 25,561 - CCNA_00025 0.34 -1.9 25,606 - CCNA_00025 0.37 -1.2 25,631 + CCNA_00025 0.39 +0.2 25,653 + CCNA_00025 0.40 +0.6 25,686 + CCNA_00025 0.42 -1.5 25,834 + CCNA_00025 0.51 -2.8 25,842 - CCNA_00025 0.51 -0.2 25,858 + CCNA_00025 0.52 -1.2 25,910 + CCNA_00025 0.56 +0.0 25,929 + CCNA_00025 0.57 -2.0 25,937 - CCNA_00025 0.57 -0.3 25,961 - CCNA_00025 0.59 -2.5 25,975 - CCNA_00025 0.60 -0.6 25,983 + CCNA_00025 0.60 +1.6 26,002 + CCNA_00025 0.61 -1.9 26,015 - CCNA_00025 0.62 -1.6 26,015 - CCNA_00025 0.62 +1.0 26,032 + CCNA_00025 0.63 +0.2 26,040 - CCNA_00025 0.63 -1.8 26,040 - CCNA_00025 0.63 -1.2 26,040 - CCNA_00025 0.63 -0.5 26,040 - CCNA_00025 0.63 -1.9 26,144 + CCNA_00025 0.70 -0.4 26,152 - CCNA_00025 0.70 -1.1 26,154 + CCNA_00025 0.70 -1.7 26,175 + CCNA_00025 0.72 -2.1 26,178 + CCNA_00025 0.72 -2.5 26,178 + CCNA_00025 0.72 -2.3 26,178 + CCNA_00025 0.72 -1.2 26,178 - CCNA_00025 0.72 -2.4 26,266 + CCNA_00025 0.77 -0.9 26,266 + CCNA_00025 0.77 -0.5 26,268 + CCNA_00025 0.77 -3.5 26,268 + CCNA_00025 0.77 -2.3 26,274 - CCNA_00025 0.78 -0.9 26,274 - CCNA_00025 0.78 -0.8 26,274 - CCNA_00025 0.78 -2.3 26,276 - CCNA_00025 0.78 -0.0 26,286 - CCNA_00025 0.78 -2.2 26,317 - CCNA_00025 0.80 -2.0 26,319 + CCNA_00025 0.80 +0.2 26,319 + CCNA_00025 0.80 +0.2 26,352 - CCNA_00025 0.82 -1.0 26,391 - CCNA_00025 0.85 +1.2 26,392 - CCNA_00025 0.85 -0.8 26,435 - CCNA_00025 0.87 -1.2 26,500 + -1.4 26,500 + +0.3 26,508 - -0.7 26,527 - -0.1 26,530 + -0.5 26,593 - -0.1 26,623 + -1.0 26,631 - -0.8 26,660 - -0.1 26,668 + -0.5 26,668 + -2.6 26,678 + -0.9 26,678 + -0.1 26,678 + -0.8 26,686 - -2.2 26,686 - +1.6 26,693 - -1.1 26,698 + +2.6 26,698 + -1.7 26,698 + -1.6 26,716 + +1.0 26,729 - -2.0 26,732 + -0.9 26,735 - -1.0 26,740 - +0.2 26,797 + +2.0 26,805 - -0.4 26,896 + -1.4 26,909 + -1.3 26,918 - -2.0 26,944 + -1.6 26,945 + -1.7 26,955 + -1.6 26,963 - -2.7 26,986 - CCNA_00026 0.11 -1.5 27,030 + CCNA_00026 0.12 +0.2 27,030 + CCNA_00026 0.12 -2.8 27,030 + CCNA_00026 0.12 -0.8 27,095 - CCNA_00026 0.15 +1.6 27,095 - CCNA_00026 0.15 -2.6 27,105 + CCNA_00026 0.15 +0.2 27,105 - CCNA_00026 0.15 +1.9 27,114 - CCNA_00026 0.15 +1.6 27,192 - CCNA_00026 0.18 +0.8 27,212 + CCNA_00026 0.19 +2.6 27,215 - CCNA_00026 0.19 -1.0 27,238 - CCNA_00026 0.20 -1.2 27,250 + CCNA_00026 0.20 +1.6 27,250 + CCNA_00026 0.20 -0.8 27,250 + CCNA_00026 0.20 +0.2 27,258 - CCNA_00026 0.21 -1.7 27,258 - CCNA_00026 0.21 -0.9 27,258 - CCNA_00026 0.21 +1.0 27,258 - CCNA_00026 0.21 +2.6 27,258 - CCNA_00026 0.21 -2.2 27,385 - CCNA_00026 0.25 -0.5 27,386 - CCNA_00026 0.25 -0.9 27,423 + CCNA_00026 0.27 -1.5 27,444 - CCNA_00026 0.27 -0.0 27,501 + CCNA_00026 0.30 +0.8 27,597 + CCNA_00026 0.33 -0.1 27,613 + CCNA_00026 0.34 -2.8 27,613 + CCNA_00026 0.34 +0.9 27,621 - CCNA_00026 0.34 -0.7 27,626 - CCNA_00026 0.34 -0.6 27,626 - CCNA_00026 0.34 +0.7 27,626 - CCNA_00026 0.34 -0.4
Or see this region's nucleotide sequence