Experiment: Pyruvate-Sulfate (60-15mM) with Aluminum 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0366 and DVU0367 are separated by 266 nucleotides DVU0367 and tRNA-Met are separated by 143 nucleotides tRNA-Met and DVU0368 are separated by 692 nucleotides
DVU0366: DVU0366 - 5-formyltetrahydrofolate cyclo-ligase family protein (TIGR), at 415,077 to 415,928
DVU0366
DVU0367: DVU0367 - Ser/Thr protein phosphatase family protein (TIGR), at 416,195 to 416,929
DVU0367
DVU_tRNA-Met-1: tRNA-Met - tRNA with anticodon CAT for Met (VIMSS-AUTO), at 417,073 to 417,149
tRNA-Met
DVU0368: DVU0368 - hypothetical protein (TIGR), at 417,842 to 417,946
DVU0368
Position (kb) 416
417 Strain fitness (log2 ratio) -2
-1
0
1 at 415.335 kb on + strand, within DVU0366 at 415.335 kb on + strand, within DVU0366 at 415.343 kb on - strand, within DVU0366 at 415.395 kb on - strand, within DVU0366 at 415.395 kb on - strand, within DVU0366 at 415.400 kb on + strand, within DVU0366 at 415.408 kb on - strand, within DVU0366 at 415.433 kb on - strand, within DVU0366 at 415.440 kb on + strand, within DVU0366 at 415.448 kb on - strand, within DVU0366 at 415.466 kb on + strand, within DVU0366 at 415.513 kb on + strand, within DVU0366 at 415.526 kb on + strand, within DVU0366 at 415.537 kb on + strand, within DVU0366 at 415.590 kb on + strand, within DVU0366 at 415.663 kb on + strand, within DVU0366 at 415.676 kb on - strand, within DVU0366 at 415.742 kb on - strand, within DVU0366 at 415.785 kb on - strand, within DVU0366 at 415.814 kb on + strand, within DVU0366 at 415.846 kb on - strand at 415.880 kb on + strand at 415.937 kb on - strand at 416.058 kb on + strand at 416.081 kb on - strand at 416.097 kb on + strand at 416.146 kb on - strand at 416.146 kb on - strand at 416.273 kb on - strand, within DVU0367 at 416.313 kb on - strand, within DVU0367 at 416.313 kb on - strand, within DVU0367 at 416.376 kb on + strand, within DVU0367 at 416.405 kb on - strand, within DVU0367 at 416.485 kb on - strand, within DVU0367 at 416.498 kb on - strand, within DVU0367 at 416.552 kb on - strand, within DVU0367 at 416.559 kb on + strand, within DVU0367 at 416.567 kb on + strand, within DVU0367 at 416.604 kb on + strand, within DVU0367 at 416.615 kb on - strand, within DVU0367 at 416.636 kb on - strand, within DVU0367 at 416.686 kb on + strand, within DVU0367 at 416.687 kb on + strand, within DVU0367 at 416.695 kb on - strand, within DVU0367 at 416.708 kb on + strand, within DVU0367 at 416.720 kb on + strand, within DVU0367 at 416.738 kb on - strand, within DVU0367 at 416.767 kb on - strand, within DVU0367 at 416.813 kb on - strand, within DVU0367 at 416.839 kb on - strand, within DVU0367 at 416.847 kb on - strand, within DVU0367 at 416.847 kb on - strand, within DVU0367 at 416.945 kb on + strand at 416.945 kb on + strand at 417.205 kb on + strand at 417.213 kb on - strand at 417.274 kb on - strand at 417.283 kb on + strand at 417.285 kb on - strand at 417.308 kb on + strand at 417.398 kb on - strand at 417.435 kb on + strand at 417.497 kb on + strand at 417.619 kb on - strand at 417.619 kb on - strand at 417.628 kb on - strand at 417.715 kb on - strand at 417.749 kb on + strand at 417.784 kb on + strand at 417.785 kb on + strand at 417.793 kb on - strand at 417.793 kb on - strand at 417.814 kb on + strand at 417.814 kb on + strand at 417.815 kb on + strand at 417.822 kb on - strand at 417.822 kb on - strand at 417.822 kb on - strand at 417.913 kb on + strand, within DVU0368 at 417.921 kb on - strand, within DVU0368
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfate (60-15mM) with Aluminum 1mM remove 415,335 + DVU0366 0.30 -0.4 415,335 + DVU0366 0.30 -0.1 415,343 - DVU0366 0.31 -1.0 415,395 - DVU0366 0.37 -0.5 415,395 - DVU0366 0.37 -0.1 415,400 + DVU0366 0.38 -2.2 415,408 - DVU0366 0.39 +0.7 415,433 - DVU0366 0.42 +0.0 415,440 + DVU0366 0.43 +0.4 415,448 - DVU0366 0.44 -0.2 415,466 + DVU0366 0.46 -0.5 415,513 + DVU0366 0.51 -1.0 415,526 + DVU0366 0.53 -0.4 415,537 + DVU0366 0.54 -0.4 415,590 + DVU0366 0.60 +0.1 415,663 + DVU0366 0.69 -1.2 415,676 - DVU0366 0.70 -0.0 415,742 - DVU0366 0.78 -0.9 415,785 - DVU0366 0.83 +0.4 415,814 + DVU0366 0.87 -0.7 415,846 - -0.2 415,880 + -0.4 415,937 - -0.2 416,058 + -0.4 416,081 - -0.2 416,097 + +0.2 416,146 - +0.6 416,146 - -2.3 416,273 - DVU0367 0.11 +1.2 416,313 - DVU0367 0.16 +1.0 416,313 - DVU0367 0.16 +0.4 416,376 + DVU0367 0.25 -0.0 416,405 - DVU0367 0.29 +1.3 416,485 - DVU0367 0.39 +1.0 416,498 - DVU0367 0.41 -1.2 416,552 - DVU0367 0.49 +0.4 416,559 + DVU0367 0.50 +0.1 416,567 + DVU0367 0.51 -0.2 416,604 + DVU0367 0.56 +0.1 416,615 - DVU0367 0.57 +1.2 416,636 - DVU0367 0.60 -0.4 416,686 + DVU0367 0.67 -0.4 416,687 + DVU0367 0.67 -0.9 416,695 - DVU0367 0.68 +1.3 416,708 + DVU0367 0.70 -1.1 416,720 + DVU0367 0.71 +0.2 416,738 - DVU0367 0.74 -0.4 416,767 - DVU0367 0.78 +0.0 416,813 - DVU0367 0.84 +0.4 416,839 - DVU0367 0.88 +0.4 416,847 - DVU0367 0.89 +0.6 416,847 - DVU0367 0.89 +1.0 416,945 + -0.1 416,945 + -0.2 417,205 + -0.7 417,213 - +0.1 417,274 - -0.3 417,283 + +1.4 417,285 - +0.3 417,308 + -1.1 417,398 - -1.8 417,435 + +0.0 417,497 + -0.7 417,619 - -0.2 417,619 - -0.1 417,628 - +0.1 417,715 - -0.2 417,749 + -0.1 417,784 + +0.3 417,785 + -0.6 417,793 - -1.3 417,793 - -0.5 417,814 + -0.5 417,814 + +0.1 417,815 + +0.7 417,822 - +0.2 417,822 - -0.8 417,822 - +1.4 417,913 + DVU0368 0.68 -0.9 417,921 - DVU0368 0.75 -0.3
Or see this region's nucleotide sequence