Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gpsA and Synpcc7942_2522 are separated by 57 nucleotides Synpcc7942_2522 and Synpcc7942_2523 overlap by 2 nucleotides Synpcc7942_2523 and tig are separated by 11 nucleotides
Synpcc7942_2521: gpsA - Nucleotide binding protein, PINc, at 2,602,698 to 2,604,026
gpsA
Synpcc7942_2522: Synpcc7942_2522 - Glycerol-3-phosphate dehydrogenase (NAD(P)+), at 2,604,084 to 2,605,010
_2522
Synpcc7942_2523: Synpcc7942_2523 - hypothetical protein, at 2,605,009 to 2,605,266
_2523
Synpcc7942_2524: tig - trigger factor, at 2,605,278 to 2,606,702
tig
Position (kb)
2605
2606 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 2604.036 kb on - strand at 2604.051 kb on + strand at 2604.051 kb on + strand at 2604.051 kb on + strand at 2604.051 kb on + strand at 2604.051 kb on + strand at 2604.051 kb on + strand at 2604.051 kb on + strand at 2604.051 kb on + strand at 2604.051 kb on + strand at 2604.064 kb on - strand at 2605.002 kb on - strand at 2605.012 kb on + strand at 2605.013 kb on + strand at 2605.013 kb on + strand at 2605.021 kb on - strand at 2605.026 kb on - strand at 2605.030 kb on + strand at 2605.070 kb on + strand, within Synpcc7942_2523 at 2605.070 kb on + strand, within Synpcc7942_2523 at 2605.083 kb on - strand, within Synpcc7942_2523 at 2605.280 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 2,604,036 - -2.6 2,604,051 + -1.7 2,604,051 + +1.9 2,604,051 + -1.7 2,604,051 + -1.1 2,604,051 + -0.0 2,604,051 + -0.3 2,604,051 + +1.6 2,604,051 + -1.3 2,604,051 + -5.3 2,604,064 - +0.8 2,605,002 - +0.2 2,605,012 + -1.3 2,605,013 + -0.2 2,605,013 + +1.5 2,605,021 - -0.5 2,605,026 - +0.0 2,605,030 + -1.0 2,605,070 + Synpcc7942_2523 0.24 -0.2 2,605,070 + Synpcc7942_2523 0.24 -1.7 2,605,083 - Synpcc7942_2523 0.29 -0.5 2,605,280 - -1.2
Or see this region's nucleotide sequence