Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt folK and Synpcc7942_2273 are separated by 26 nucleotides Synpcc7942_2273 and chlD are separated by 42 nucleotides chlD and tRNA-Arg are separated by 585 nucleotides tRNA-Arg and Synpcc7942_2275 overlap by 27 nucleotides Synpcc7942_2275 and Synpcc7942_2276 overlap by 34 nucleotides
Synpcc7942_2272: folK - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase, at 2,339,596 to 2,340,126
folK
Synpcc7942_2273: Synpcc7942_2273 - hypothetical protein, at 2,340,153 to 2,340,920
_2273
Synpcc7942_2274: chlD - protoporphyrin IX magnesium-chelatase, at 2,340,963 to 2,342,996
chlD
Synpcc7942_R0011: tRNA-Arg - tRNA-Arg, at 2,343,582 to 2,343,657
tRNA-Arg
Synpcc7942_2275: Synpcc7942_2275 - hypothetical protein, at 2,343,631 to 2,343,915
_2275
Synpcc7942_2276: Synpcc7942_2276 - hypothetical protein, at 2,343,882 to 2,344,334
_2276
Position (kb)
2340
2341
2342
2343 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 2340.138 kb on + strand at 2340.153 kb on + strand at 2340.181 kb on + strand at 2340.213 kb on - strand at 2340.229 kb on + strand at 2340.229 kb on + strand at 2340.250 kb on + strand, within Synpcc7942_2273 at 2340.258 kb on - strand, within Synpcc7942_2273 at 2340.258 kb on - strand, within Synpcc7942_2273 at 2340.262 kb on + strand, within Synpcc7942_2273 at 2340.262 kb on + strand, within Synpcc7942_2273 at 2340.270 kb on - strand, within Synpcc7942_2273 at 2340.272 kb on + strand, within Synpcc7942_2273 at 2340.273 kb on + strand, within Synpcc7942_2273 at 2340.278 kb on + strand, within Synpcc7942_2273 at 2340.287 kb on - strand, within Synpcc7942_2273 at 2340.317 kb on + strand, within Synpcc7942_2273 at 2340.318 kb on + strand, within Synpcc7942_2273 at 2340.326 kb on - strand, within Synpcc7942_2273 at 2340.337 kb on + strand, within Synpcc7942_2273 at 2340.341 kb on + strand, within Synpcc7942_2273 at 2340.397 kb on + strand, within Synpcc7942_2273 at 2340.416 kb on + strand, within Synpcc7942_2273 at 2340.424 kb on - strand, within Synpcc7942_2273 at 2340.473 kb on - strand, within Synpcc7942_2273 at 2340.473 kb on - strand at 2340.481 kb on - strand, within Synpcc7942_2273 at 2340.489 kb on + strand, within Synpcc7942_2273 at 2340.499 kb on + strand, within Synpcc7942_2273 at 2340.504 kb on + strand, within Synpcc7942_2273 at 2340.543 kb on + strand, within Synpcc7942_2273 at 2340.543 kb on + strand, within Synpcc7942_2273 at 2340.543 kb on + strand, within Synpcc7942_2273 at 2340.551 kb on - strand, within Synpcc7942_2273 at 2340.551 kb on - strand, within Synpcc7942_2273 at 2340.551 kb on - strand, within Synpcc7942_2273 at 2340.551 kb on - strand, within Synpcc7942_2273 at 2340.552 kb on + strand, within Synpcc7942_2273 at 2340.558 kb on - strand, within Synpcc7942_2273 at 2340.591 kb on + strand, within Synpcc7942_2273 at 2340.610 kb on - strand, within Synpcc7942_2273 at 2340.620 kb on + strand, within Synpcc7942_2273 at 2340.625 kb on + strand, within Synpcc7942_2273 at 2340.628 kb on - strand, within Synpcc7942_2273 at 2340.633 kb on - strand, within Synpcc7942_2273 at 2340.635 kb on + strand at 2340.635 kb on - strand, within Synpcc7942_2273 at 2340.641 kb on - strand, within Synpcc7942_2273 at 2340.664 kb on - strand, within Synpcc7942_2273 at 2340.677 kb on + strand, within Synpcc7942_2273 at 2340.689 kb on + strand, within Synpcc7942_2273 at 2340.700 kb on + strand, within Synpcc7942_2273 at 2340.729 kb on + strand, within Synpcc7942_2273 at 2340.746 kb on + strand, within Synpcc7942_2273 at 2340.771 kb on + strand, within Synpcc7942_2273 at 2340.778 kb on - strand, within Synpcc7942_2273 at 2340.784 kb on - strand, within Synpcc7942_2273 at 2340.799 kb on - strand, within Synpcc7942_2273 at 2340.824 kb on + strand, within Synpcc7942_2273 at 2340.832 kb on + strand, within Synpcc7942_2273 at 2340.832 kb on + strand, within Synpcc7942_2273 at 2340.833 kb on - strand at 2340.840 kb on - strand, within Synpcc7942_2273 at 2340.840 kb on - strand, within Synpcc7942_2273 at 2340.840 kb on - strand, within Synpcc7942_2273 at 2340.851 kb on + strand at 2340.867 kb on + strand at 2340.870 kb on - strand at 2340.875 kb on - strand at 2340.876 kb on - strand at 2340.955 kb on - strand at 2340.970 kb on - strand at 2343.019 kb on + strand at 2343.034 kb on + strand at 2343.212 kb on - strand at 2343.221 kb on - strand at 2343.406 kb on - strand at 2343.447 kb on + strand at 2343.447 kb on + strand at 2343.455 kb on - strand at 2343.499 kb on - strand at 2343.505 kb on - strand at 2343.524 kb on - strand at 2343.715 kb on + strand, within Synpcc7942_2275 at 2343.718 kb on - strand, within Synpcc7942_2275 at 2343.780 kb on - strand, within Synpcc7942_2275 at 2343.791 kb on + strand, within Synpcc7942_2275 at 2343.866 kb on + strand, within Synpcc7942_2275 at 2343.909 kb on + strand at 2343.909 kb on + strand at 2343.917 kb on - strand at 2343.917 kb on - strand at 2343.932 kb on - strand, within Synpcc7942_2276 at 2343.952 kb on - strand, within Synpcc7942_2276 at 2343.959 kb on - strand, within Synpcc7942_2276 at 2343.970 kb on + strand, within Synpcc7942_2276 at 2343.970 kb on + strand, within Synpcc7942_2276 at 2343.995 kb on + strand, within Synpcc7942_2276
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 2,340,138 + -1.3 2,340,153 + -1.4 2,340,181 + +1.4 2,340,213 - -0.6 2,340,229 + -2.8 2,340,229 + +0.1 2,340,250 + Synpcc7942_2273 0.13 -0.7 2,340,258 - Synpcc7942_2273 0.14 +0.9 2,340,258 - Synpcc7942_2273 0.14 -0.8 2,340,262 + Synpcc7942_2273 0.14 +1.3 2,340,262 + Synpcc7942_2273 0.14 -0.7 2,340,270 - Synpcc7942_2273 0.15 -1.9 2,340,272 + Synpcc7942_2273 0.15 +0.5 2,340,273 + Synpcc7942_2273 0.16 -0.4 2,340,278 + Synpcc7942_2273 0.16 +1.6 2,340,287 - Synpcc7942_2273 0.17 +1.6 2,340,317 + Synpcc7942_2273 0.21 -1.1 2,340,318 + Synpcc7942_2273 0.21 +1.4 2,340,326 - Synpcc7942_2273 0.23 -1.9 2,340,337 + Synpcc7942_2273 0.24 +0.7 2,340,341 + Synpcc7942_2273 0.24 -0.9 2,340,397 + Synpcc7942_2273 0.32 +0.2 2,340,416 + Synpcc7942_2273 0.34 +1.0 2,340,424 - Synpcc7942_2273 0.35 +0.4 2,340,473 - Synpcc7942_2273 0.42 -0.3 2,340,473 - +1.2 2,340,481 - Synpcc7942_2273 0.43 +0.3 2,340,489 + Synpcc7942_2273 0.44 -0.9 2,340,499 + Synpcc7942_2273 0.45 -0.7 2,340,504 + Synpcc7942_2273 0.46 +3.9 2,340,543 + Synpcc7942_2273 0.51 -0.7 2,340,543 + Synpcc7942_2273 0.51 -0.6 2,340,543 + Synpcc7942_2273 0.51 +1.9 2,340,551 - Synpcc7942_2273 0.52 -0.3 2,340,551 - Synpcc7942_2273 0.52 -1.3 2,340,551 - Synpcc7942_2273 0.52 +1.4 2,340,551 - Synpcc7942_2273 0.52 -1.7 2,340,552 + Synpcc7942_2273 0.52 -1.1 2,340,558 - Synpcc7942_2273 0.53 +0.9 2,340,591 + Synpcc7942_2273 0.57 -0.3 2,340,610 - Synpcc7942_2273 0.60 +1.1 2,340,620 + Synpcc7942_2273 0.61 -0.8 2,340,625 + Synpcc7942_2273 0.61 +1.8 2,340,628 - Synpcc7942_2273 0.62 +1.3 2,340,633 - Synpcc7942_2273 0.62 +0.2 2,340,635 + +0.9 2,340,635 - Synpcc7942_2273 0.63 -1.0 2,340,641 - Synpcc7942_2273 0.64 +1.8 2,340,664 - Synpcc7942_2273 0.67 -1.0 2,340,677 + Synpcc7942_2273 0.68 -1.7 2,340,689 + Synpcc7942_2273 0.70 -0.2 2,340,700 + Synpcc7942_2273 0.71 -0.4 2,340,729 + Synpcc7942_2273 0.75 +1.9 2,340,746 + Synpcc7942_2273 0.77 +0.6 2,340,771 + Synpcc7942_2273 0.80 -1.7 2,340,778 - Synpcc7942_2273 0.81 +1.1 2,340,784 - Synpcc7942_2273 0.82 -0.6 2,340,799 - Synpcc7942_2273 0.84 -1.2 2,340,824 + Synpcc7942_2273 0.87 +0.5 2,340,832 + Synpcc7942_2273 0.88 +0.1 2,340,832 + Synpcc7942_2273 0.88 -1.1 2,340,833 - +0.5 2,340,840 - Synpcc7942_2273 0.89 +0.5 2,340,840 - Synpcc7942_2273 0.89 -0.2 2,340,840 - Synpcc7942_2273 0.89 -1.1 2,340,851 + +0.9 2,340,867 + +0.0 2,340,870 - +1.1 2,340,875 - -0.0 2,340,876 - +2.0 2,340,955 - +1.1 2,340,970 - +1.7 2,343,019 + +0.5 2,343,034 + -0.3 2,343,212 - +1.3 2,343,221 - +0.4 2,343,406 - -1.5 2,343,447 + +1.5 2,343,447 + -0.8 2,343,455 - +2.5 2,343,499 - +2.1 2,343,505 - -3.9 2,343,524 - +0.9 2,343,715 + Synpcc7942_2275 0.29 +2.1 2,343,718 - Synpcc7942_2275 0.31 -1.6 2,343,780 - Synpcc7942_2275 0.52 +2.2 2,343,791 + Synpcc7942_2275 0.56 +2.1 2,343,866 + Synpcc7942_2275 0.82 -1.4 2,343,909 + +0.1 2,343,909 + -0.0 2,343,917 - -2.5 2,343,917 - +0.2 2,343,932 - Synpcc7942_2276 0.11 +1.1 2,343,952 - Synpcc7942_2276 0.15 -1.7 2,343,959 - Synpcc7942_2276 0.17 -0.2 2,343,970 + Synpcc7942_2276 0.19 +2.1 2,343,970 + Synpcc7942_2276 0.19 +0.5 2,343,995 + Synpcc7942_2276 0.25 +0.5
Or see this region's nucleotide sequence