Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_2274

Experiment: L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfolK and Synpcc7942_2273 are separated by 26 nucleotidesSynpcc7942_2273 and chlD are separated by 42 nucleotideschlD and tRNA-Arg are separated by 585 nucleotidestRNA-Arg and Synpcc7942_2275 overlap by 27 nucleotidesSynpcc7942_2275 and Synpcc7942_2276 overlap by 34 nucleotides Synpcc7942_2272: folK - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase, at 2,339,596 to 2,340,126 folK Synpcc7942_2273: Synpcc7942_2273 - hypothetical protein, at 2,340,153 to 2,340,920 _2273 Synpcc7942_2274: chlD - protoporphyrin IX magnesium-chelatase, at 2,340,963 to 2,342,996 chlD Synpcc7942_R0011: tRNA-Arg - tRNA-Arg, at 2,343,582 to 2,343,657 tRNA-Arg Synpcc7942_2275: Synpcc7942_2275 - hypothetical protein, at 2,343,631 to 2,343,915 _2275 Synpcc7942_2276: Synpcc7942_2276 - hypothetical protein, at 2,343,882 to 2,344,334 _2276 Position (kb) 2340 2341 2342 2343Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 2340.138 kb on + strandat 2340.153 kb on + strandat 2340.181 kb on + strandat 2340.213 kb on - strandat 2340.229 kb on + strandat 2340.229 kb on + strandat 2340.250 kb on + strand, within Synpcc7942_2273at 2340.258 kb on - strand, within Synpcc7942_2273at 2340.258 kb on - strand, within Synpcc7942_2273at 2340.262 kb on + strand, within Synpcc7942_2273at 2340.262 kb on + strand, within Synpcc7942_2273at 2340.270 kb on - strand, within Synpcc7942_2273at 2340.272 kb on + strand, within Synpcc7942_2273at 2340.273 kb on + strand, within Synpcc7942_2273at 2340.278 kb on + strand, within Synpcc7942_2273at 2340.287 kb on - strand, within Synpcc7942_2273at 2340.317 kb on + strand, within Synpcc7942_2273at 2340.318 kb on + strand, within Synpcc7942_2273at 2340.326 kb on - strand, within Synpcc7942_2273at 2340.337 kb on + strand, within Synpcc7942_2273at 2340.341 kb on + strand, within Synpcc7942_2273at 2340.397 kb on + strand, within Synpcc7942_2273at 2340.416 kb on + strand, within Synpcc7942_2273at 2340.424 kb on - strand, within Synpcc7942_2273at 2340.473 kb on - strand, within Synpcc7942_2273at 2340.473 kb on - strandat 2340.481 kb on - strand, within Synpcc7942_2273at 2340.489 kb on + strand, within Synpcc7942_2273at 2340.499 kb on + strand, within Synpcc7942_2273at 2340.504 kb on + strand, within Synpcc7942_2273at 2340.543 kb on + strand, within Synpcc7942_2273at 2340.543 kb on + strand, within Synpcc7942_2273at 2340.543 kb on + strand, within Synpcc7942_2273at 2340.551 kb on - strand, within Synpcc7942_2273at 2340.551 kb on - strand, within Synpcc7942_2273at 2340.551 kb on - strand, within Synpcc7942_2273at 2340.551 kb on - strand, within Synpcc7942_2273at 2340.552 kb on + strand, within Synpcc7942_2273at 2340.558 kb on - strand, within Synpcc7942_2273at 2340.591 kb on + strand, within Synpcc7942_2273at 2340.610 kb on - strand, within Synpcc7942_2273at 2340.620 kb on + strand, within Synpcc7942_2273at 2340.625 kb on + strand, within Synpcc7942_2273at 2340.628 kb on - strand, within Synpcc7942_2273at 2340.633 kb on - strand, within Synpcc7942_2273at 2340.635 kb on + strandat 2340.635 kb on - strand, within Synpcc7942_2273at 2340.641 kb on - strand, within Synpcc7942_2273at 2340.664 kb on - strand, within Synpcc7942_2273at 2340.677 kb on + strand, within Synpcc7942_2273at 2340.689 kb on + strand, within Synpcc7942_2273at 2340.700 kb on + strand, within Synpcc7942_2273at 2340.729 kb on + strand, within Synpcc7942_2273at 2340.746 kb on + strand, within Synpcc7942_2273at 2340.771 kb on + strand, within Synpcc7942_2273at 2340.778 kb on - strand, within Synpcc7942_2273at 2340.784 kb on - strand, within Synpcc7942_2273at 2340.799 kb on - strand, within Synpcc7942_2273at 2340.824 kb on + strand, within Synpcc7942_2273at 2340.832 kb on + strand, within Synpcc7942_2273at 2340.832 kb on + strand, within Synpcc7942_2273at 2340.833 kb on - strandat 2340.840 kb on - strand, within Synpcc7942_2273at 2340.840 kb on - strand, within Synpcc7942_2273at 2340.840 kb on - strand, within Synpcc7942_2273at 2340.851 kb on + strandat 2340.867 kb on + strandat 2340.870 kb on - strandat 2340.875 kb on - strandat 2340.876 kb on - strandat 2340.955 kb on - strandat 2340.970 kb on - strandat 2343.019 kb on + strandat 2343.034 kb on + strandat 2343.212 kb on - strandat 2343.221 kb on - strandat 2343.406 kb on - strandat 2343.447 kb on + strandat 2343.447 kb on + strandat 2343.455 kb on - strandat 2343.499 kb on - strandat 2343.505 kb on - strandat 2343.524 kb on - strandat 2343.715 kb on + strand, within Synpcc7942_2275at 2343.718 kb on - strand, within Synpcc7942_2275at 2343.780 kb on - strand, within Synpcc7942_2275at 2343.791 kb on + strand, within Synpcc7942_2275at 2343.866 kb on + strand, within Synpcc7942_2275at 2343.909 kb on + strandat 2343.909 kb on + strandat 2343.917 kb on - strandat 2343.917 kb on - strandat 2343.932 kb on - strand, within Synpcc7942_2276at 2343.952 kb on - strand, within Synpcc7942_2276at 2343.959 kb on - strand, within Synpcc7942_2276at 2343.970 kb on + strand, within Synpcc7942_2276at 2343.970 kb on + strand, within Synpcc7942_2276at 2343.995 kb on + strand, within Synpcc7942_2276

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
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2,340,138 + -1.3
2,340,153 + -1.4
2,340,181 + +1.4
2,340,213 - -0.6
2,340,229 + -2.8
2,340,229 + +0.1
2,340,250 + Synpcc7942_2273 0.13 -0.7
2,340,258 - Synpcc7942_2273 0.14 +0.9
2,340,258 - Synpcc7942_2273 0.14 -0.8
2,340,262 + Synpcc7942_2273 0.14 +1.3
2,340,262 + Synpcc7942_2273 0.14 -0.7
2,340,270 - Synpcc7942_2273 0.15 -1.9
2,340,272 + Synpcc7942_2273 0.15 +0.5
2,340,273 + Synpcc7942_2273 0.16 -0.4
2,340,278 + Synpcc7942_2273 0.16 +1.6
2,340,287 - Synpcc7942_2273 0.17 +1.6
2,340,317 + Synpcc7942_2273 0.21 -1.1
2,340,318 + Synpcc7942_2273 0.21 +1.4
2,340,326 - Synpcc7942_2273 0.23 -1.9
2,340,337 + Synpcc7942_2273 0.24 +0.7
2,340,341 + Synpcc7942_2273 0.24 -0.9
2,340,397 + Synpcc7942_2273 0.32 +0.2
2,340,416 + Synpcc7942_2273 0.34 +1.0
2,340,424 - Synpcc7942_2273 0.35 +0.4
2,340,473 - Synpcc7942_2273 0.42 -0.3
2,340,473 - +1.2
2,340,481 - Synpcc7942_2273 0.43 +0.3
2,340,489 + Synpcc7942_2273 0.44 -0.9
2,340,499 + Synpcc7942_2273 0.45 -0.7
2,340,504 + Synpcc7942_2273 0.46 +3.9
2,340,543 + Synpcc7942_2273 0.51 -0.7
2,340,543 + Synpcc7942_2273 0.51 -0.6
2,340,543 + Synpcc7942_2273 0.51 +1.9
2,340,551 - Synpcc7942_2273 0.52 -0.3
2,340,551 - Synpcc7942_2273 0.52 -1.3
2,340,551 - Synpcc7942_2273 0.52 +1.4
2,340,551 - Synpcc7942_2273 0.52 -1.7
2,340,552 + Synpcc7942_2273 0.52 -1.1
2,340,558 - Synpcc7942_2273 0.53 +0.9
2,340,591 + Synpcc7942_2273 0.57 -0.3
2,340,610 - Synpcc7942_2273 0.60 +1.1
2,340,620 + Synpcc7942_2273 0.61 -0.8
2,340,625 + Synpcc7942_2273 0.61 +1.8
2,340,628 - Synpcc7942_2273 0.62 +1.3
2,340,633 - Synpcc7942_2273 0.62 +0.2
2,340,635 + +0.9
2,340,635 - Synpcc7942_2273 0.63 -1.0
2,340,641 - Synpcc7942_2273 0.64 +1.8
2,340,664 - Synpcc7942_2273 0.67 -1.0
2,340,677 + Synpcc7942_2273 0.68 -1.7
2,340,689 + Synpcc7942_2273 0.70 -0.2
2,340,700 + Synpcc7942_2273 0.71 -0.4
2,340,729 + Synpcc7942_2273 0.75 +1.9
2,340,746 + Synpcc7942_2273 0.77 +0.6
2,340,771 + Synpcc7942_2273 0.80 -1.7
2,340,778 - Synpcc7942_2273 0.81 +1.1
2,340,784 - Synpcc7942_2273 0.82 -0.6
2,340,799 - Synpcc7942_2273 0.84 -1.2
2,340,824 + Synpcc7942_2273 0.87 +0.5
2,340,832 + Synpcc7942_2273 0.88 +0.1
2,340,832 + Synpcc7942_2273 0.88 -1.1
2,340,833 - +0.5
2,340,840 - Synpcc7942_2273 0.89 +0.5
2,340,840 - Synpcc7942_2273 0.89 -0.2
2,340,840 - Synpcc7942_2273 0.89 -1.1
2,340,851 + +0.9
2,340,867 + +0.0
2,340,870 - +1.1
2,340,875 - -0.0
2,340,876 - +2.0
2,340,955 - +1.1
2,340,970 - +1.7
2,343,019 + +0.5
2,343,034 + -0.3
2,343,212 - +1.3
2,343,221 - +0.4
2,343,406 - -1.5
2,343,447 + +1.5
2,343,447 + -0.8
2,343,455 - +2.5
2,343,499 - +2.1
2,343,505 - -3.9
2,343,524 - +0.9
2,343,715 + Synpcc7942_2275 0.29 +2.1
2,343,718 - Synpcc7942_2275 0.31 -1.6
2,343,780 - Synpcc7942_2275 0.52 +2.2
2,343,791 + Synpcc7942_2275 0.56 +2.1
2,343,866 + Synpcc7942_2275 0.82 -1.4
2,343,909 + +0.1
2,343,909 + -0.0
2,343,917 - -2.5
2,343,917 - +0.2
2,343,932 - Synpcc7942_2276 0.11 +1.1
2,343,952 - Synpcc7942_2276 0.15 -1.7
2,343,959 - Synpcc7942_2276 0.17 -0.2
2,343,970 + Synpcc7942_2276 0.19 +2.1
2,343,970 + Synpcc7942_2276 0.19 +0.5
2,343,995 + Synpcc7942_2276 0.25 +0.5

Or see this region's nucleotide sequence