Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tRNA-Tyr and tRNA-Thr are separated by 7 nucleotides tRNA-Thr and Synpcc7942_0917 are separated by 209 nucleotides Synpcc7942_0917 and aas are separated by 285 nucleotides aas and Synpcc7942_0919 are separated by 48 nucleotides Synpcc7942_0919 and psaK1 are separated by 196 nucleotides
Synpcc7942_R0042: tRNA-Tyr - tRNA-Tyr, at 923,151 to 923,235
tRNA-Tyr
Synpcc7942_R0043: tRNA-Thr - tRNA-Thr, at 923,243 to 923,317
tRNA-Thr
Synpcc7942_0917: Synpcc7942_0917 - hypothetical protein, at 923,527 to 923,793
_0917
Synpcc7942_0918: aas - long-chain-fatty-acid CoA ligase, at 924,079 to 926,028
aas
Synpcc7942_0919: Synpcc7942_0919 - hypothetical protein, at 926,077 to 926,523
_0919
Synpcc7942_0920: psaK1 - photosystem I reaction center, at 926,720 to 926,974
psaK1
Position (kb) 924
925
926
927 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 923.348 kb on + strand at 923.348 kb on + strand at 923.356 kb on - strand at 923.356 kb on - strand at 923.356 kb on - strand at 923.368 kb on + strand at 923.381 kb on - strand at 923.408 kb on + strand at 923.409 kb on + strand at 923.409 kb on + strand at 923.416 kb on - strand at 923.416 kb on - strand at 923.416 kb on - strand at 923.417 kb on - strand at 923.438 kb on + strand at 923.438 kb on + strand at 923.446 kb on - strand at 923.446 kb on - strand at 923.498 kb on - strand at 923.512 kb on + strand at 923.512 kb on - strand at 923.517 kb on - strand at 923.520 kb on - strand at 923.523 kb on + strand at 923.525 kb on - strand at 923.549 kb on - strand at 923.552 kb on + strand at 923.559 kb on + strand, within Synpcc7942_0917 at 923.593 kb on - strand, within Synpcc7942_0917 at 923.604 kb on + strand, within Synpcc7942_0917 at 923.618 kb on + strand, within Synpcc7942_0917 at 923.626 kb on - strand, within Synpcc7942_0917 at 923.636 kb on - strand, within Synpcc7942_0917 at 923.659 kb on - strand, within Synpcc7942_0917 at 923.681 kb on - strand, within Synpcc7942_0917 at 923.707 kb on - strand, within Synpcc7942_0917 at 923.719 kb on - strand, within Synpcc7942_0917 at 923.812 kb on - strand at 923.815 kb on - strand at 923.817 kb on + strand at 923.817 kb on + strand at 923.825 kb on - strand at 923.833 kb on - strand at 923.853 kb on - strand at 923.858 kb on - strand at 923.869 kb on + strand at 923.869 kb on + strand at 923.869 kb on + strand at 923.874 kb on + strand at 923.882 kb on - strand at 923.909 kb on + strand at 923.917 kb on - strand at 923.922 kb on + strand at 923.941 kb on + strand at 923.949 kb on - strand at 923.957 kb on - strand at 923.975 kb on + strand at 923.977 kb on + strand at 924.009 kb on + strand at 924.009 kb on + strand at 924.014 kb on - strand at 924.017 kb on - strand at 924.068 kb on + strand at 924.075 kb on - strand at 924.110 kb on + strand at 924.118 kb on - strand at 924.120 kb on - strand at 924.132 kb on + strand at 924.147 kb on + strand at 924.152 kb on + strand at 924.160 kb on - strand at 924.171 kb on - strand at 924.204 kb on + strand at 924.268 kb on - strand at 924.329 kb on - strand, within aas at 924.334 kb on + strand, within aas at 924.334 kb on + strand, within aas at 924.380 kb on - strand, within aas at 924.400 kb on - strand, within aas at 924.403 kb on + strand, within aas at 924.422 kb on - strand, within aas at 924.465 kb on + strand, within aas at 924.468 kb on - strand, within aas at 924.473 kb on + strand, within aas at 924.473 kb on + strand, within aas at 924.473 kb on + strand, within aas at 924.473 kb on - strand, within aas at 924.473 kb on - strand, within aas at 924.481 kb on - strand, within aas at 924.481 kb on - strand, within aas at 924.481 kb on - strand, within aas at 924.520 kb on - strand at 924.522 kb on + strand, within aas at 924.522 kb on + strand, within aas at 924.530 kb on - strand, within aas at 924.540 kb on - strand, within aas at 924.541 kb on + strand, within aas at 924.541 kb on + strand, within aas at 924.549 kb on - strand, within aas at 924.556 kb on + strand, within aas at 924.572 kb on - strand, within aas at 924.589 kb on - strand, within aas at 924.591 kb on + strand, within aas at 924.595 kb on + strand, within aas at 924.599 kb on - strand, within aas at 924.607 kb on - strand, within aas at 924.614 kb on + strand, within aas at 924.637 kb on + strand, within aas at 924.699 kb on + strand, within aas at 924.702 kb on - strand, within aas at 924.702 kb on - strand, within aas at 924.707 kb on - strand, within aas at 924.716 kb on + strand, within aas at 924.716 kb on + strand, within aas at 924.726 kb on + strand, within aas at 924.733 kb on + strand, within aas at 924.782 kb on - strand, within aas at 924.784 kb on - strand, within aas at 924.803 kb on - strand, within aas at 924.817 kb on - strand at 924.824 kb on - strand, within aas at 924.829 kb on - strand, within aas at 924.875 kb on + strand, within aas at 924.881 kb on - strand, within aas at 924.884 kb on + strand, within aas at 924.891 kb on + strand, within aas at 924.891 kb on + strand, within aas at 924.891 kb on + strand, within aas at 924.891 kb on + strand, within aas at 924.892 kb on - strand, within aas at 924.896 kb on + strand, within aas at 924.899 kb on - strand, within aas at 924.899 kb on - strand, within aas at 924.901 kb on + strand, within aas at 924.904 kb on - strand, within aas at 924.906 kb on + strand, within aas at 924.909 kb on - strand, within aas at 924.909 kb on - strand, within aas at 924.914 kb on - strand, within aas at 924.945 kb on + strand, within aas at 924.953 kb on - strand, within aas at 924.956 kb on + strand, within aas at 924.964 kb on - strand, within aas at 924.988 kb on + strand, within aas at 925.043 kb on + strand at 925.096 kb on - strand, within aas at 925.121 kb on + strand, within aas at 925.126 kb on + strand, within aas at 925.137 kb on + strand, within aas at 925.147 kb on + strand, within aas at 925.160 kb on + strand, within aas at 925.181 kb on - strand, within aas at 925.182 kb on + strand, within aas at 925.195 kb on + strand, within aas at 925.203 kb on - strand, within aas at 925.223 kb on - strand, within aas at 925.273 kb on + strand, within aas at 925.280 kb on - strand at 925.316 kb on + strand, within aas at 925.323 kb on - strand, within aas at 925.324 kb on - strand, within aas at 925.340 kb on - strand, within aas at 925.342 kb on - strand, within aas at 925.371 kb on + strand, within aas at 925.378 kb on - strand, within aas at 925.385 kb on - strand, within aas at 925.409 kb on - strand, within aas at 925.446 kb on + strand, within aas at 925.473 kb on + strand, within aas at 925.473 kb on + strand, within aas at 925.481 kb on - strand, within aas at 925.481 kb on - strand, within aas at 925.502 kb on + strand, within aas at 925.564 kb on + strand, within aas at 925.573 kb on - strand, within aas at 925.602 kb on + strand, within aas at 925.606 kb on - strand, within aas at 925.611 kb on + strand, within aas at 925.617 kb on + strand, within aas at 925.626 kb on - strand, within aas at 925.635 kb on - strand, within aas at 925.635 kb on - strand, within aas at 925.640 kb on - strand, within aas at 925.647 kb on + strand, within aas at 925.647 kb on + strand, within aas at 925.685 kb on + strand, within aas at 925.685 kb on - strand, within aas at 925.739 kb on + strand, within aas at 925.744 kb on + strand, within aas at 925.762 kb on - strand, within aas at 925.802 kb on - strand, within aas at 925.814 kb on + strand, within aas at 925.822 kb on - strand, within aas at 925.822 kb on - strand, within aas at 925.835 kb on + strand at 925.840 kb on + strand at 925.855 kb on - strand at 925.890 kb on + strand at 925.910 kb on + strand at 926.042 kb on + strand at 926.050 kb on - strand at 926.075 kb on + strand at 926.092 kb on + strand at 926.093 kb on - strand at 926.126 kb on - strand, within Synpcc7942_0919 at 926.186 kb on - strand, within Synpcc7942_0919 at 926.279 kb on - strand, within Synpcc7942_0919 at 926.436 kb on + strand, within Synpcc7942_0919 at 926.500 kb on - strand at 926.526 kb on - strand at 926.672 kb on + strand at 926.699 kb on + strand at 926.704 kb on + strand at 926.709 kb on + strand at 926.801 kb on + strand, within psaK1 at 926.806 kb on + strand, within psaK1 at 926.895 kb on + strand, within psaK1 at 926.933 kb on + strand, within psaK1 at 926.935 kb on + strand, within psaK1 at 927.007 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 923,348 + -0.9 923,348 + -1.3 923,356 - -2.8 923,356 - +2.1 923,356 - -1.3 923,368 + -0.9 923,381 - +1.3 923,408 + -0.0 923,409 + -1.5 923,409 + +0.1 923,416 - +0.1 923,416 - -0.7 923,416 - -1.0 923,417 - +2.1 923,438 + -1.8 923,438 + +0.3 923,446 - -0.3 923,446 - -1.5 923,498 - -1.5 923,512 + -1.1 923,512 - -1.7 923,517 - -0.0 923,520 - -1.2 923,523 + -2.2 923,525 - -1.0 923,549 - -2.3 923,552 + +0.3 923,559 + Synpcc7942_0917 0.12 -0.7 923,593 - Synpcc7942_0917 0.25 -2.0 923,604 + Synpcc7942_0917 0.29 -0.5 923,618 + Synpcc7942_0917 0.34 -1.7 923,626 - Synpcc7942_0917 0.37 -1.9 923,636 - Synpcc7942_0917 0.41 -2.1 923,659 - Synpcc7942_0917 0.49 -2.2 923,681 - Synpcc7942_0917 0.58 -1.5 923,707 - Synpcc7942_0917 0.67 -0.8 923,719 - Synpcc7942_0917 0.72 -0.9 923,812 - -2.0 923,815 - -0.8 923,817 + -0.9 923,817 + -1.4 923,825 - -0.8 923,833 - -2.5 923,853 - -3.4 923,858 - +0.3 923,869 + -4.2 923,869 + -1.0 923,869 + -0.6 923,874 + -1.7 923,882 - -0.7 923,909 + -1.2 923,917 - -0.6 923,922 + +1.6 923,941 + +0.6 923,949 - +2.2 923,957 - -1.7 923,975 + -1.6 923,977 + +0.6 924,009 + -0.3 924,009 + -0.3 924,014 - +0.9 924,017 - -0.7 924,068 + -0.0 924,075 - -0.9 924,110 + +0.2 924,118 - +0.8 924,120 - -2.7 924,132 + -0.9 924,147 + -1.4 924,152 + -1.7 924,160 - -0.8 924,171 - -1.0 924,204 + -2.7 924,268 - -1.3 924,329 - aas Synpcc7942_0918 0.13 -3.3 924,334 + aas Synpcc7942_0918 0.13 -0.0 924,334 + aas Synpcc7942_0918 0.13 +1.2 924,380 - aas Synpcc7942_0918 0.15 +0.5 924,400 - aas Synpcc7942_0918 0.16 -0.4 924,403 + aas Synpcc7942_0918 0.17 -1.8 924,422 - aas Synpcc7942_0918 0.18 -1.6 924,465 + aas Synpcc7942_0918 0.20 -1.3 924,468 - aas Synpcc7942_0918 0.20 -1.8 924,473 + aas Synpcc7942_0918 0.20 -2.1 924,473 + aas Synpcc7942_0918 0.20 -0.2 924,473 + aas Synpcc7942_0918 0.20 -2.7 924,473 - aas Synpcc7942_0918 0.20 -1.8 924,473 - aas Synpcc7942_0918 0.20 -1.8 924,481 - aas Synpcc7942_0918 0.21 +1.0 924,481 - aas Synpcc7942_0918 0.21 -0.7 924,481 - aas Synpcc7942_0918 0.21 -0.6 924,520 - +0.8 924,522 + aas Synpcc7942_0918 0.23 -0.6 924,522 + aas Synpcc7942_0918 0.23 -0.7 924,530 - aas Synpcc7942_0918 0.23 +0.1 924,540 - aas Synpcc7942_0918 0.24 -2.2 924,541 + aas Synpcc7942_0918 0.24 -0.2 924,541 + aas Synpcc7942_0918 0.24 +1.0 924,549 - aas Synpcc7942_0918 0.24 -0.8 924,556 + aas Synpcc7942_0918 0.24 +0.1 924,572 - aas Synpcc7942_0918 0.25 +1.0 924,589 - aas Synpcc7942_0918 0.26 +0.8 924,591 + aas Synpcc7942_0918 0.26 -2.2 924,595 + aas Synpcc7942_0918 0.26 -3.5 924,599 - aas Synpcc7942_0918 0.27 +1.8 924,607 - aas Synpcc7942_0918 0.27 -1.1 924,614 + aas Synpcc7942_0918 0.27 -1.1 924,637 + aas Synpcc7942_0918 0.29 +1.1 924,699 + aas Synpcc7942_0918 0.32 -0.2 924,702 - aas Synpcc7942_0918 0.32 -2.6 924,702 - aas Synpcc7942_0918 0.32 +1.9 924,707 - aas Synpcc7942_0918 0.32 -1.8 924,716 + aas Synpcc7942_0918 0.33 -0.2 924,716 + aas Synpcc7942_0918 0.33 -1.2 924,726 + aas Synpcc7942_0918 0.33 -0.6 924,733 + aas Synpcc7942_0918 0.34 -2.0 924,782 - aas Synpcc7942_0918 0.36 +0.5 924,784 - aas Synpcc7942_0918 0.36 -0.7 924,803 - aas Synpcc7942_0918 0.37 -1.3 924,817 - +1.6 924,824 - aas Synpcc7942_0918 0.38 +0.4 924,829 - aas Synpcc7942_0918 0.38 -3.9 924,875 + aas Synpcc7942_0918 0.41 +1.1 924,881 - aas Synpcc7942_0918 0.41 +0.6 924,884 + aas Synpcc7942_0918 0.41 +0.5 924,891 + aas Synpcc7942_0918 0.42 -1.7 924,891 + aas Synpcc7942_0918 0.42 -0.8 924,891 + aas Synpcc7942_0918 0.42 -1.4 924,891 + aas Synpcc7942_0918 0.42 -0.8 924,892 - aas Synpcc7942_0918 0.42 -0.4 924,896 + aas Synpcc7942_0918 0.42 -0.4 924,899 - aas Synpcc7942_0918 0.42 -4.0 924,899 - aas Synpcc7942_0918 0.42 -1.2 924,901 + aas Synpcc7942_0918 0.42 -0.9 924,904 - aas Synpcc7942_0918 0.42 -1.5 924,906 + aas Synpcc7942_0918 0.42 -0.1 924,909 - aas Synpcc7942_0918 0.43 +0.3 924,909 - aas Synpcc7942_0918 0.43 -2.1 924,914 - aas Synpcc7942_0918 0.43 -1.0 924,945 + aas Synpcc7942_0918 0.44 +0.3 924,953 - aas Synpcc7942_0918 0.45 +0.9 924,956 + aas Synpcc7942_0918 0.45 -1.4 924,964 - aas Synpcc7942_0918 0.45 -0.6 924,988 + aas Synpcc7942_0918 0.47 -0.8 925,043 + +1.1 925,096 - aas Synpcc7942_0918 0.52 +0.1 925,121 + aas Synpcc7942_0918 0.53 -1.9 925,126 + aas Synpcc7942_0918 0.54 +0.9 925,137 + aas Synpcc7942_0918 0.54 -0.1 925,147 + aas Synpcc7942_0918 0.55 +0.1 925,160 + aas Synpcc7942_0918 0.55 -0.4 925,181 - aas Synpcc7942_0918 0.57 +0.5 925,182 + aas Synpcc7942_0918 0.57 -1.7 925,195 + aas Synpcc7942_0918 0.57 -1.5 925,203 - aas Synpcc7942_0918 0.58 -2.5 925,223 - aas Synpcc7942_0918 0.59 -0.7 925,273 + aas Synpcc7942_0918 0.61 -2.8 925,280 - +0.3 925,316 + aas Synpcc7942_0918 0.63 -1.8 925,323 - aas Synpcc7942_0918 0.64 -2.0 925,324 - aas Synpcc7942_0918 0.64 -0.5 925,340 - aas Synpcc7942_0918 0.65 -1.5 925,342 - aas Synpcc7942_0918 0.65 -2.4 925,371 + aas Synpcc7942_0918 0.66 -2.8 925,378 - aas Synpcc7942_0918 0.67 +0.1 925,385 - aas Synpcc7942_0918 0.67 -2.5 925,409 - aas Synpcc7942_0918 0.68 +1.3 925,446 + aas Synpcc7942_0918 0.70 -2.2 925,473 + aas Synpcc7942_0918 0.71 -0.3 925,473 + aas Synpcc7942_0918 0.71 -1.5 925,481 - aas Synpcc7942_0918 0.72 -0.3 925,481 - aas Synpcc7942_0918 0.72 -0.9 925,502 + aas Synpcc7942_0918 0.73 -0.7 925,564 + aas Synpcc7942_0918 0.76 -0.8 925,573 - aas Synpcc7942_0918 0.77 -1.5 925,602 + aas Synpcc7942_0918 0.78 +1.8 925,606 - aas Synpcc7942_0918 0.78 -1.4 925,611 + aas Synpcc7942_0918 0.79 -0.2 925,617 + aas Synpcc7942_0918 0.79 -3.2 925,626 - aas Synpcc7942_0918 0.79 -2.0 925,635 - aas Synpcc7942_0918 0.80 -1.8 925,635 - aas Synpcc7942_0918 0.80 -2.1 925,640 - aas Synpcc7942_0918 0.80 -1.3 925,647 + aas Synpcc7942_0918 0.80 -0.1 925,647 + aas Synpcc7942_0918 0.80 -0.6 925,685 + aas Synpcc7942_0918 0.82 -2.1 925,685 - aas Synpcc7942_0918 0.82 -0.5 925,739 + aas Synpcc7942_0918 0.85 -1.8 925,744 + aas Synpcc7942_0918 0.85 +0.1 925,762 - aas Synpcc7942_0918 0.86 -2.0 925,802 - aas Synpcc7942_0918 0.88 -0.5 925,814 + aas Synpcc7942_0918 0.89 -0.4 925,822 - aas Synpcc7942_0918 0.89 -0.1 925,822 - aas Synpcc7942_0918 0.89 -0.5 925,835 + +0.3 925,840 + -1.0 925,855 - -0.5 925,890 + -0.0 925,910 + -2.2 926,042 + +0.4 926,050 - -3.0 926,075 + +0.4 926,092 + -0.7 926,093 - -0.9 926,126 - Synpcc7942_0919 0.11 -2.2 926,186 - Synpcc7942_0919 0.24 -1.7 926,279 - Synpcc7942_0919 0.45 +0.2 926,436 + Synpcc7942_0919 0.80 -1.7 926,500 - -1.3 926,526 - -2.2 926,672 + +1.6 926,699 + -1.0 926,704 + -1.1 926,709 + +0.7 926,801 + psaK1 Synpcc7942_0920 0.32 +1.3 926,806 + psaK1 Synpcc7942_0920 0.34 +1.2 926,895 + psaK1 Synpcc7942_0920 0.69 +0.6 926,933 + psaK1 Synpcc7942_0920 0.84 -0.1 926,935 + psaK1 Synpcc7942_0920 0.84 -0.6 927,007 - -0.2
Or see this region's nucleotide sequence