Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0766

Experiment: L-Phenylalanine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSynpcc7942_0764 and Synpcc7942_0765 are separated by 243 nucleotidesSynpcc7942_0765 and Synpcc7942_0766 are separated by 62 nucleotidesSynpcc7942_0766 and Synpcc7942_0767 are separated by 375 nucleotides Synpcc7942_0764: Synpcc7942_0764 - transcriptional regulator, XRE family, at 757,356 to 757,595 _0764 Synpcc7942_0765: Synpcc7942_0765 - hypothetical protein, at 757,839 to 758,327 _0765 Synpcc7942_0766: Synpcc7942_0766 - DNA-damage-inducible protein, at 758,390 to 759,037 _0766 Synpcc7942_0767: Synpcc7942_0767 - hypothetical protein, at 759,413 to 759,847 _0767 Position (kb) 758 759 760Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 757.453 kb on - strand, within Synpcc7942_0764at 757.497 kb on + strand, within Synpcc7942_0764at 757.512 kb on + strand, within Synpcc7942_0764at 757.547 kb on - strand, within Synpcc7942_0764at 757.579 kb on - strandat 757.987 kb on + strand, within Synpcc7942_0765at 758.039 kb on - strand, within Synpcc7942_0765at 758.079 kb on + strandat 758.093 kb on + strand, within Synpcc7942_0765at 758.093 kb on + strand, within Synpcc7942_0765at 758.101 kb on - strand, within Synpcc7942_0765at 758.122 kb on - strand, within Synpcc7942_0765at 758.129 kb on + strand, within Synpcc7942_0765at 758.142 kb on + strand, within Synpcc7942_0765at 758.172 kb on + strand, within Synpcc7942_0765at 758.177 kb on + strand, within Synpcc7942_0765at 758.188 kb on + strand, within Synpcc7942_0765at 758.212 kb on + strand, within Synpcc7942_0765at 758.227 kb on + strand, within Synpcc7942_0765at 758.242 kb on + strand, within Synpcc7942_0765at 758.255 kb on - strand, within Synpcc7942_0765at 758.257 kb on + strand, within Synpcc7942_0765at 758.258 kb on - strand, within Synpcc7942_0765at 758.265 kb on + strand, within Synpcc7942_0765at 758.270 kb on + strand, within Synpcc7942_0765at 758.295 kb on - strandat 758.353 kb on + strandat 758.393 kb on + strandat 758.409 kb on + strandat 758.420 kb on + strandat 758.420 kb on + strandat 758.437 kb on + strandat 758.437 kb on - strandat 758.520 kb on + strand, within Synpcc7942_0766at 758.520 kb on + strand, within Synpcc7942_0766at 758.525 kb on + strand, within Synpcc7942_0766at 758.525 kb on + strand, within Synpcc7942_0766at 758.528 kb on - strand, within Synpcc7942_0766at 758.528 kb on - strand, within Synpcc7942_0766at 758.528 kb on - strand, within Synpcc7942_0766at 758.542 kb on + strand, within Synpcc7942_0766at 758.547 kb on + strand, within Synpcc7942_0766at 758.578 kb on + strand, within Synpcc7942_0766at 758.603 kb on + strand, within Synpcc7942_0766at 758.604 kb on - strand, within Synpcc7942_0766at 758.613 kb on - strand, within Synpcc7942_0766at 758.614 kb on - strand, within Synpcc7942_0766at 758.615 kb on + strand, within Synpcc7942_0766at 758.615 kb on + strand, within Synpcc7942_0766at 758.616 kb on - strand, within Synpcc7942_0766at 758.627 kb on + strand, within Synpcc7942_0766at 758.655 kb on + strand, within Synpcc7942_0766at 758.657 kb on - strand, within Synpcc7942_0766at 758.681 kb on + strand, within Synpcc7942_0766at 758.691 kb on + strand, within Synpcc7942_0766at 758.703 kb on + strand, within Synpcc7942_0766at 758.712 kb on + strand, within Synpcc7942_0766at 758.735 kb on + strand, within Synpcc7942_0766at 758.740 kb on + strand, within Synpcc7942_0766at 758.743 kb on - strand, within Synpcc7942_0766at 758.748 kb on - strand, within Synpcc7942_0766at 758.750 kb on + strand, within Synpcc7942_0766at 758.761 kb on + strand, within Synpcc7942_0766at 758.763 kb on - strand, within Synpcc7942_0766at 758.767 kb on + strand, within Synpcc7942_0766at 758.767 kb on + strand, within Synpcc7942_0766at 758.767 kb on + strand, within Synpcc7942_0766at 758.768 kb on - strand, within Synpcc7942_0766at 758.768 kb on - strand, within Synpcc7942_0766at 758.769 kb on - strand, within Synpcc7942_0766at 758.779 kb on - strand, within Synpcc7942_0766at 758.793 kb on - strand, within Synpcc7942_0766at 758.809 kb on + strand, within Synpcc7942_0766at 758.818 kb on - strand, within Synpcc7942_0766at 758.818 kb on - strand, within Synpcc7942_0766at 758.823 kb on - strand, within Synpcc7942_0766at 758.835 kb on + strand, within Synpcc7942_0766at 758.835 kb on + strand, within Synpcc7942_0766at 758.843 kb on - strand, within Synpcc7942_0766at 758.845 kb on + strand, within Synpcc7942_0766at 758.845 kb on + strand, within Synpcc7942_0766at 758.853 kb on - strand, within Synpcc7942_0766at 758.853 kb on - strand, within Synpcc7942_0766at 758.866 kb on - strandat 758.878 kb on + strand, within Synpcc7942_0766at 758.893 kb on + strand, within Synpcc7942_0766at 758.911 kb on - strand, within Synpcc7942_0766at 758.912 kb on + strand, within Synpcc7942_0766at 758.913 kb on + strand, within Synpcc7942_0766at 758.913 kb on + strand, within Synpcc7942_0766at 758.921 kb on + strand, within Synpcc7942_0766at 758.921 kb on - strand, within Synpcc7942_0766at 758.921 kb on - strand, within Synpcc7942_0766at 758.923 kb on + strand, within Synpcc7942_0766at 758.931 kb on - strand, within Synpcc7942_0766at 758.970 kb on + strand, within Synpcc7942_0766at 758.980 kb on + strandat 758.986 kb on - strandat 758.986 kb on - strandat 758.990 kb on + strandat 759.000 kb on + strandat 759.024 kb on + strandat 759.033 kb on + strandat 759.034 kb on - strandat 759.038 kb on + strandat 759.039 kb on - strandat 759.039 kb on - strandat 759.044 kb on + strandat 759.045 kb on + strandat 759.045 kb on + strandat 759.046 kb on - strandat 759.046 kb on - strandat 759.049 kb on - strandat 759.051 kb on - strandat 759.053 kb on - strandat 759.053 kb on - strandat 759.079 kb on + strandat 759.099 kb on + strandat 759.100 kb on + strandat 759.112 kb on - strandat 759.120 kb on - strandat 759.157 kb on - strandat 759.221 kb on + strandat 759.264 kb on - strandat 759.264 kb on - strandat 759.280 kb on + strandat 759.280 kb on + strandat 759.363 kb on + strandat 759.363 kb on + strandat 759.363 kb on + strandat 759.371 kb on - strandat 759.371 kb on - strandat 759.371 kb on - strandat 759.386 kb on + strandat 759.394 kb on - strandat 759.394 kb on - strandat 759.394 kb on - strandat 759.394 kb on - strandat 759.437 kb on - strandat 759.449 kb on + strandat 759.451 kb on + strandat 759.456 kb on + strandat 759.469 kb on - strand, within Synpcc7942_0767at 759.474 kb on - strand, within Synpcc7942_0767at 759.487 kb on + strand, within Synpcc7942_0767at 759.495 kb on - strand, within Synpcc7942_0767at 759.511 kb on + strand, within Synpcc7942_0767at 759.519 kb on - strand, within Synpcc7942_0767at 759.522 kb on + strand, within Synpcc7942_0767at 759.530 kb on - strand, within Synpcc7942_0767at 759.530 kb on - strand, within Synpcc7942_0767at 759.530 kb on - strand, within Synpcc7942_0767at 759.530 kb on - strand, within Synpcc7942_0767at 759.536 kb on + strand, within Synpcc7942_0767at 759.537 kb on - strand, within Synpcc7942_0767at 759.570 kb on + strand, within Synpcc7942_0767at 759.573 kb on - strand, within Synpcc7942_0767at 759.573 kb on - strand, within Synpcc7942_0767at 759.578 kb on - strand, within Synpcc7942_0767at 759.584 kb on - strand, within Synpcc7942_0767at 759.629 kb on + strand, within Synpcc7942_0767at 759.653 kb on + strand, within Synpcc7942_0767at 759.653 kb on + strand, within Synpcc7942_0767at 759.698 kb on + strand, within Synpcc7942_0767at 759.698 kb on + strand, within Synpcc7942_0767at 759.698 kb on + strand, within Synpcc7942_0767at 759.698 kb on + strand, within Synpcc7942_0767at 759.706 kb on - strand, within Synpcc7942_0767at 759.711 kb on + strand, within Synpcc7942_0767at 759.711 kb on - strand, within Synpcc7942_0767at 759.730 kb on + strand, within Synpcc7942_0767at 759.730 kb on + strand, within Synpcc7942_0767at 759.738 kb on - strand, within Synpcc7942_0767at 759.785 kb on - strand, within Synpcc7942_0767at 759.814 kb on + strandat 759.834 kb on - strandat 759.913 kb on - strandat 759.961 kb on + strandat 759.973 kb on + strandat 759.978 kb on + strandat 760.015 kb on + strandat 760.015 kb on + strandat 760.023 kb on - strandat 760.023 kb on - strandat 760.023 kb on - strandat 760.023 kb on - strandat 760.023 kb on - strandat 760.023 kb on - strandat 760.023 kb on - strandat 760.023 kb on - strandat 760.023 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
remove
757,453 - Synpcc7942_0764 0.40 +0.7
757,497 + Synpcc7942_0764 0.59 -0.3
757,512 + Synpcc7942_0764 0.65 -1.2
757,547 - Synpcc7942_0764 0.80 -0.1
757,579 - -0.7
757,987 + Synpcc7942_0765 0.30 -1.1
758,039 - Synpcc7942_0765 0.41 -0.5
758,079 + -0.0
758,093 + Synpcc7942_0765 0.52 -1.6
758,093 + Synpcc7942_0765 0.52 +1.6
758,101 - Synpcc7942_0765 0.54 -2.5
758,122 - Synpcc7942_0765 0.58 +0.8
758,129 + Synpcc7942_0765 0.59 -0.0
758,142 + Synpcc7942_0765 0.62 +1.4
758,172 + Synpcc7942_0765 0.68 +1.2
758,177 + Synpcc7942_0765 0.69 -1.6
758,188 + Synpcc7942_0765 0.71 +3.9
758,212 + Synpcc7942_0765 0.76 +1.5
758,227 + Synpcc7942_0765 0.79 -1.2
758,242 + Synpcc7942_0765 0.82 -0.9
758,255 - Synpcc7942_0765 0.85 -0.1
758,257 + Synpcc7942_0765 0.85 -0.2
758,258 - Synpcc7942_0765 0.86 +2.8
758,265 + Synpcc7942_0765 0.87 -0.8
758,270 + Synpcc7942_0765 0.88 +0.3
758,295 - +0.1
758,353 + -2.0
758,393 + -1.3
758,409 + +1.6
758,420 + +2.6
758,420 + -0.9
758,437 + +1.5
758,437 - -1.0
758,520 + Synpcc7942_0766 0.20 -0.5
758,520 + Synpcc7942_0766 0.20 -1.1
758,525 + Synpcc7942_0766 0.21 +1.0
758,525 + Synpcc7942_0766 0.21 -1.2
758,528 - Synpcc7942_0766 0.21 -1.3
758,528 - Synpcc7942_0766 0.21 +1.2
758,528 - Synpcc7942_0766 0.21 -0.7
758,542 + Synpcc7942_0766 0.23 -0.5
758,547 + Synpcc7942_0766 0.24 -1.1
758,578 + Synpcc7942_0766 0.29 -1.5
758,603 + Synpcc7942_0766 0.33 +0.5
758,604 - Synpcc7942_0766 0.33 +1.4
758,613 - Synpcc7942_0766 0.34 -2.4
758,614 - Synpcc7942_0766 0.35 -1.2
758,615 + Synpcc7942_0766 0.35 +0.7
758,615 + Synpcc7942_0766 0.35 -0.9
758,616 - Synpcc7942_0766 0.35 -2.3
758,627 + Synpcc7942_0766 0.37 -1.3
758,655 + Synpcc7942_0766 0.41 -2.7
758,657 - Synpcc7942_0766 0.41 -1.5
758,681 + Synpcc7942_0766 0.45 -0.3
758,691 + Synpcc7942_0766 0.46 -0.2
758,703 + Synpcc7942_0766 0.48 -0.9
758,712 + Synpcc7942_0766 0.50 -1.5
758,735 + Synpcc7942_0766 0.53 -1.4
758,740 + Synpcc7942_0766 0.54 +1.0
758,743 - Synpcc7942_0766 0.54 +0.4
758,748 - Synpcc7942_0766 0.55 +0.6
758,750 + Synpcc7942_0766 0.56 -1.8
758,761 + Synpcc7942_0766 0.57 -0.5
758,763 - Synpcc7942_0766 0.58 -1.8
758,767 + Synpcc7942_0766 0.58 +0.3
758,767 + Synpcc7942_0766 0.58 +0.1
758,767 + Synpcc7942_0766 0.58 -1.9
758,768 - Synpcc7942_0766 0.58 +2.0
758,768 - Synpcc7942_0766 0.58 -0.9
758,769 - Synpcc7942_0766 0.58 -1.2
758,779 - Synpcc7942_0766 0.60 +0.2
758,793 - Synpcc7942_0766 0.62 -0.6
758,809 + Synpcc7942_0766 0.65 -0.4
758,818 - Synpcc7942_0766 0.66 +0.6
758,818 - Synpcc7942_0766 0.66 -2.1
758,823 - Synpcc7942_0766 0.67 -0.3
758,835 + Synpcc7942_0766 0.69 +1.5
758,835 + Synpcc7942_0766 0.69 -0.8
758,843 - Synpcc7942_0766 0.70 -0.2
758,845 + Synpcc7942_0766 0.70 +0.9
758,845 + Synpcc7942_0766 0.70 +0.0
758,853 - Synpcc7942_0766 0.71 +2.2
758,853 - Synpcc7942_0766 0.71 -1.5
758,866 - +1.5
758,878 + Synpcc7942_0766 0.75 +1.2
758,893 + Synpcc7942_0766 0.78 +0.0
758,911 - Synpcc7942_0766 0.80 +1.4
758,912 + Synpcc7942_0766 0.81 +0.5
758,913 + Synpcc7942_0766 0.81 -2.3
758,913 + Synpcc7942_0766 0.81 +2.1
758,921 + Synpcc7942_0766 0.82 -0.8
758,921 - Synpcc7942_0766 0.82 -1.0
758,921 - Synpcc7942_0766 0.82 -1.2
758,923 + Synpcc7942_0766 0.82 -0.9
758,931 - Synpcc7942_0766 0.83 -3.1
758,970 + Synpcc7942_0766 0.90 -1.8
758,980 + -1.1
758,986 - +1.9
758,986 - -0.2
758,990 + +0.3
759,000 + +2.1
759,024 + +0.7
759,033 + +1.3
759,034 - +1.1
759,038 + -0.3
759,039 - +1.0
759,039 - -1.3
759,044 + -0.8
759,045 + -1.0
759,045 + +1.1
759,046 - +0.2
759,046 - -0.8
759,049 - +1.8
759,051 - -0.0
759,053 - -0.0
759,053 - -0.9
759,079 + -1.6
759,099 + -0.5
759,100 + +0.7
759,112 - -1.0
759,120 - -1.1
759,157 - -0.8
759,221 + -0.4
759,264 - +2.0
759,264 - -1.4
759,280 + +1.5
759,280 + +0.1
759,363 + -0.6
759,363 + +0.9
759,363 + -1.3
759,371 - -0.6
759,371 - +1.3
759,371 - -0.5
759,386 + +0.8
759,394 - -1.5
759,394 - -0.2
759,394 - -1.9
759,394 - +2.6
759,437 - -0.6
759,449 + +0.6
759,451 + -1.1
759,456 + -1.5
759,469 - Synpcc7942_0767 0.13 -0.9
759,474 - Synpcc7942_0767 0.14 +2.0
759,487 + Synpcc7942_0767 0.17 +1.7
759,495 - Synpcc7942_0767 0.19 +0.2
759,511 + Synpcc7942_0767 0.23 -0.5
759,519 - Synpcc7942_0767 0.24 -0.7
759,522 + Synpcc7942_0767 0.25 -0.5
759,530 - Synpcc7942_0767 0.27 -1.1
759,530 - Synpcc7942_0767 0.27 -0.4
759,530 - Synpcc7942_0767 0.27 +1.4
759,530 - Synpcc7942_0767 0.27 -0.0
759,536 + Synpcc7942_0767 0.28 -0.1
759,537 - Synpcc7942_0767 0.29 -0.4
759,570 + Synpcc7942_0767 0.36 +1.9
759,573 - Synpcc7942_0767 0.37 -1.0
759,573 - Synpcc7942_0767 0.37 +0.0
759,578 - Synpcc7942_0767 0.38 +0.0
759,584 - Synpcc7942_0767 0.39 -0.4
759,629 + Synpcc7942_0767 0.50 -3.9
759,653 + Synpcc7942_0767 0.55 +1.4
759,653 + Synpcc7942_0767 0.55 -1.5
759,698 + Synpcc7942_0767 0.66 +0.8
759,698 + Synpcc7942_0767 0.66 +0.4
759,698 + Synpcc7942_0767 0.66 -0.5
759,698 + Synpcc7942_0767 0.66 -1.1
759,706 - Synpcc7942_0767 0.67 -1.9
759,711 + Synpcc7942_0767 0.69 -0.8
759,711 - Synpcc7942_0767 0.69 -1.2
759,730 + Synpcc7942_0767 0.73 -1.7
759,730 + Synpcc7942_0767 0.73 -1.6
759,738 - Synpcc7942_0767 0.75 -0.3
759,785 - Synpcc7942_0767 0.86 +1.6
759,814 + -1.3
759,834 - -1.7
759,913 - +1.4
759,961 + +1.5
759,973 + -1.2
759,978 + -0.6
760,015 + +2.2
760,015 + +2.2
760,023 - -0.1
760,023 - +0.1
760,023 - +0.1
760,023 - +1.6
760,023 - -2.1
760,023 - -0.3
760,023 - +1.8
760,023 - +2.1
760,023 - +0.3

Or see this region's nucleotide sequence