Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0344

Experiment: L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0342 and psb27 are separated by 63 nucleotidespsb27 and Synpcc7942_0344 are separated by 352 nucleotidesSynpcc7942_0344 and birA are separated by 84 nucleotidesbirA and Synpcc7942_0346 are separated by 45 nucleotides Synpcc7942_0342: Synpcc7942_0342 - hypothetical protein, at 336,363 to 336,590 _0342 Synpcc7942_0343: psb27 - photosystem II 11 kD protein, at 336,654 to 337,055 psb27 Synpcc7942_0344: Synpcc7942_0344 - probable peptidase, at 337,408 to 338,451 _0344 Synpcc7942_0345: birA - Biotin--acetyl-CoA-carboxylase ligase, at 338,536 to 339,306 birA Synpcc7942_0346: Synpcc7942_0346 - Protein of unknown function DUF152, at 339,352 to 340,131 _0346 Position (kb) 337 338 339Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 336.425 kb on - strand, within Synpcc7942_0342at 336.452 kb on + strand, within Synpcc7942_0342at 336.468 kb on + strand, within Synpcc7942_0342at 336.498 kb on + strand, within Synpcc7942_0342at 336.504 kb on + strand, within Synpcc7942_0342at 336.506 kb on - strand, within Synpcc7942_0342at 336.512 kb on - strand, within Synpcc7942_0342at 336.544 kb on - strand, within Synpcc7942_0342at 336.544 kb on - strand, within Synpcc7942_0342at 336.563 kb on - strand, within Synpcc7942_0342at 336.590 kb on + strandat 336.640 kb on + strandat 336.769 kb on - strand, within psb27at 336.774 kb on + strand, within psb27at 336.774 kb on + strand, within psb27at 336.814 kb on - strand, within psb27at 336.838 kb on + strand, within psb27at 336.933 kb on + strand, within psb27at 337.050 kb on + strandat 337.050 kb on + strandat 337.050 kb on + strandat 337.058 kb on - strandat 337.058 kb on - strandat 337.058 kb on - strandat 337.058 kb on - strandat 337.058 kb on - strandat 337.101 kb on + strandat 337.107 kb on + strandat 337.200 kb on + strandat 337.200 kb on + strandat 337.200 kb on + strandat 337.201 kb on + strandat 337.201 kb on + strandat 337.201 kb on + strandat 337.201 kb on + strandat 337.201 kb on + strandat 337.201 kb on + strandat 337.201 kb on + strandat 337.201 kb on + strandat 337.209 kb on - strandat 337.209 kb on - strandat 337.209 kb on - strandat 337.209 kb on - strandat 337.209 kb on - strandat 337.222 kb on - strandat 337.224 kb on + strandat 337.236 kb on + strandat 337.245 kb on - strandat 337.249 kb on + strandat 337.257 kb on + strandat 337.257 kb on + strandat 337.327 kb on + strandat 337.364 kb on + strandat 337.405 kb on + strandat 337.405 kb on + strandat 337.412 kb on + strandat 337.412 kb on + strandat 337.413 kb on - strandat 337.420 kb on - strandat 337.431 kb on + strandat 337.442 kb on + strandat 337.486 kb on + strandat 337.489 kb on + strandat 337.540 kb on + strand, within Synpcc7942_0344at 337.563 kb on - strand, within Synpcc7942_0344at 337.593 kb on - strand, within Synpcc7942_0344at 337.707 kb on + strand, within Synpcc7942_0344at 337.719 kb on - strand, within Synpcc7942_0344at 337.814 kb on + strand, within Synpcc7942_0344at 337.821 kb on - strand, within Synpcc7942_0344at 337.821 kb on - strand, within Synpcc7942_0344at 337.846 kb on + strand, within Synpcc7942_0344at 337.854 kb on - strand, within Synpcc7942_0344at 337.854 kb on - strand, within Synpcc7942_0344at 337.870 kb on + strand, within Synpcc7942_0344at 337.870 kb on + strand, within Synpcc7942_0344at 337.880 kb on + strandat 337.951 kb on - strand, within Synpcc7942_0344at 337.958 kb on + strand, within Synpcc7942_0344at 337.966 kb on - strand, within Synpcc7942_0344at 337.980 kb on + strand, within Synpcc7942_0344at 338.009 kb on + strand, within Synpcc7942_0344at 338.009 kb on + strand, within Synpcc7942_0344at 338.017 kb on - strand, within Synpcc7942_0344at 338.042 kb on - strand, within Synpcc7942_0344at 338.046 kb on - strand, within Synpcc7942_0344at 338.121 kb on - strand, within Synpcc7942_0344at 338.220 kb on + strand, within Synpcc7942_0344at 338.281 kb on + strand, within Synpcc7942_0344at 338.320 kb on - strand, within Synpcc7942_0344at 338.320 kb on - strand, within Synpcc7942_0344at 338.331 kb on - strand, within Synpcc7942_0344at 338.379 kb on - strandat 338.402 kb on + strandat 338.405 kb on - strandat 338.421 kb on - strandat 338.435 kb on - strandat 338.435 kb on - strandat 338.437 kb on - strandat 338.446 kb on + strandat 338.454 kb on - strandat 338.454 kb on - strandat 338.463 kb on - strandat 338.464 kb on - strandat 338.480 kb on + strandat 338.485 kb on - strandat 338.488 kb on - strandat 338.492 kb on + strandat 338.492 kb on + strandat 338.515 kb on - strandat 338.534 kb on + strandat 338.566 kb on - strandat 339.336 kb on + strandat 339.344 kb on + strandat 339.371 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
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336,425 - Synpcc7942_0342 0.27 +2.2
336,452 + Synpcc7942_0342 0.39 +1.8
336,468 + Synpcc7942_0342 0.46 -1.1
336,498 + Synpcc7942_0342 0.59 +0.1
336,504 + Synpcc7942_0342 0.62 +1.0
336,506 - Synpcc7942_0342 0.63 +0.3
336,512 - Synpcc7942_0342 0.65 -2.0
336,544 - Synpcc7942_0342 0.79 +1.4
336,544 - Synpcc7942_0342 0.79 +1.1
336,563 - Synpcc7942_0342 0.88 -1.1
336,590 + +0.7
336,640 + +2.6
336,769 - psb27 Synpcc7942_0343 0.29 +1.9
336,774 + psb27 Synpcc7942_0343 0.30 -0.5
336,774 + psb27 Synpcc7942_0343 0.30 -1.6
336,814 - psb27 Synpcc7942_0343 0.40 -0.1
336,838 + psb27 Synpcc7942_0343 0.46 -0.1
336,933 + psb27 Synpcc7942_0343 0.69 +0.4
337,050 + +1.0
337,050 + +1.4
337,050 + -0.6
337,058 - +2.0
337,058 - -0.4
337,058 - -0.2
337,058 - +0.1
337,058 - -1.3
337,101 + -1.3
337,107 + +0.9
337,200 + -0.3
337,200 + +0.0
337,200 + +0.4
337,201 + +0.3
337,201 + -1.2
337,201 + -0.3
337,201 + -0.6
337,201 + +1.6
337,201 + -3.1
337,201 + -0.1
337,201 + -1.1
337,209 - +2.1
337,209 - +2.1
337,209 - -0.3
337,209 - +0.4
337,209 - -1.0
337,222 - -1.1
337,224 + +1.7
337,236 + +1.9
337,245 - -0.6
337,249 + +0.3
337,257 + +0.9
337,257 + -2.2
337,327 + +0.3
337,364 + -0.7
337,405 + +0.1
337,405 + -1.8
337,412 + +0.4
337,412 + +1.1
337,413 - +0.9
337,420 - -0.6
337,431 + +1.9
337,442 + -0.8
337,486 + -0.5
337,489 + -1.0
337,540 + Synpcc7942_0344 0.13 +1.2
337,563 - Synpcc7942_0344 0.15 -0.1
337,593 - Synpcc7942_0344 0.18 +1.0
337,707 + Synpcc7942_0344 0.29 +2.0
337,719 - Synpcc7942_0344 0.30 -0.4
337,814 + Synpcc7942_0344 0.39 -0.8
337,821 - Synpcc7942_0344 0.40 +1.5
337,821 - Synpcc7942_0344 0.40 -0.6
337,846 + Synpcc7942_0344 0.42 +0.2
337,854 - Synpcc7942_0344 0.43 +3.1
337,854 - Synpcc7942_0344 0.43 +0.5
337,870 + Synpcc7942_0344 0.44 -1.5
337,870 + Synpcc7942_0344 0.44 +2.3
337,880 + +1.0
337,951 - Synpcc7942_0344 0.52 -1.0
337,958 + Synpcc7942_0344 0.53 -0.6
337,966 - Synpcc7942_0344 0.53 +1.0
337,980 + Synpcc7942_0344 0.55 +0.9
338,009 + Synpcc7942_0344 0.58 -0.9
338,009 + Synpcc7942_0344 0.58 +1.2
338,017 - Synpcc7942_0344 0.58 +1.4
338,042 - Synpcc7942_0344 0.61 -1.3
338,046 - Synpcc7942_0344 0.61 +0.7
338,121 - Synpcc7942_0344 0.68 -1.0
338,220 + Synpcc7942_0344 0.78 +1.4
338,281 + Synpcc7942_0344 0.84 -1.2
338,320 - Synpcc7942_0344 0.87 -0.7
338,320 - Synpcc7942_0344 0.87 +2.2
338,331 - Synpcc7942_0344 0.88 +2.0
338,379 - +0.1
338,402 + -1.6
338,405 - -0.1
338,421 - +0.9
338,435 - +0.5
338,435 - +0.2
338,437 - -0.4
338,446 + -0.6
338,454 - +1.9
338,454 - -0.3
338,463 - +1.9
338,464 - -1.0
338,480 + -0.5
338,485 - +0.1
338,488 - +0.7
338,492 + -0.3
338,492 + -0.7
338,515 - -0.6
338,534 + -1.7
338,566 - -0.7
339,336 + +1.2
339,344 + -0.1
339,371 - -0.6

Or see this region's nucleotide sequence