Experiment: Sisomicin 0.0016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_746 and Pf6N2E2_747 are separated by 3 nucleotides Pf6N2E2_747 and Pf6N2E2_748 are separated by 95 nucleotides Pf6N2E2_748 and Pf6N2E2_749 are separated by 1 nucleotides Pf6N2E2_749 and Pf6N2E2_750 are separated by 365 nucleotides
Pf6N2E2_746 - FIG00958097: hypothetical protein, at 856,829 to 857,083
_746
Pf6N2E2_747 - Transcriptional regulator in custer with plant-induced nitrilase, at 857,087 to 857,986
_747
Pf6N2E2_748 - Plant-induced nitrilase (EC 3.5.5.1), hydrolyses beta-cyano-L-alanine, at 858,082 to 859,005
_748
Pf6N2E2_749 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 859,007 to 859,477
_749
Pf6N2E2_750 - Transcriptional regulator, DeoR family, at 859,843 to 860,559
_750
Position (kb) 858
859
860 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 857.082 kb on - strand at 857.082 kb on - strand at 857.088 kb on + strand at 857.088 kb on + strand at 857.088 kb on + strand at 857.089 kb on - strand at 857.089 kb on - strand at 857.123 kb on + strand at 857.123 kb on + strand at 857.476 kb on - strand, within Pf6N2E2_747 at 857.707 kb on - strand, within Pf6N2E2_747 at 857.752 kb on + strand, within Pf6N2E2_747 at 857.831 kb on + strand, within Pf6N2E2_747 at 857.831 kb on + strand, within Pf6N2E2_747 at 857.831 kb on + strand, within Pf6N2E2_747 at 857.831 kb on + strand, within Pf6N2E2_747 at 857.832 kb on - strand, within Pf6N2E2_747 at 857.832 kb on - strand, within Pf6N2E2_747 at 857.844 kb on + strand, within Pf6N2E2_747 at 857.844 kb on + strand, within Pf6N2E2_747 at 857.844 kb on + strand, within Pf6N2E2_747 at 857.845 kb on - strand, within Pf6N2E2_747 at 857.980 kb on + strand at 858.163 kb on + strand at 858.163 kb on + strand at 858.302 kb on - strand, within Pf6N2E2_748 at 858.419 kb on - strand, within Pf6N2E2_748 at 858.419 kb on - strand, within Pf6N2E2_748 at 858.419 kb on - strand, within Pf6N2E2_748 at 858.433 kb on + strand, within Pf6N2E2_748 at 858.433 kb on + strand, within Pf6N2E2_748 at 858.613 kb on + strand, within Pf6N2E2_748 at 858.614 kb on - strand, within Pf6N2E2_748 at 858.614 kb on - strand, within Pf6N2E2_748 at 858.833 kb on + strand, within Pf6N2E2_748 at 858.833 kb on + strand, within Pf6N2E2_748 at 858.910 kb on + strand, within Pf6N2E2_748 at 858.917 kb on - strand at 858.934 kb on + strand at 858.935 kb on - strand at 858.935 kb on - strand at 859.104 kb on + strand, within Pf6N2E2_749 at 859.104 kb on + strand, within Pf6N2E2_749 at 859.104 kb on + strand, within Pf6N2E2_749 at 859.104 kb on + strand, within Pf6N2E2_749 at 859.104 kb on + strand, within Pf6N2E2_749 at 859.104 kb on + strand, within Pf6N2E2_749 at 859.104 kb on + strand, within Pf6N2E2_749 at 859.105 kb on - strand, within Pf6N2E2_749 at 859.105 kb on - strand, within Pf6N2E2_749 at 859.443 kb on - strand at 859.754 kb on + strand at 859.754 kb on + strand at 859.754 kb on + strand at 859.754 kb on + strand at 859.754 kb on + strand at 859.754 kb on + strand at 859.754 kb on + strand at 859.754 kb on + strand at 859.754 kb on + strand at 859.755 kb on - strand at 859.755 kb on - strand at 859.755 kb on - strand at 859.755 kb on - strand at 859.755 kb on - strand at 859.755 kb on - strand at 859.755 kb on - strand at 859.755 kb on - strand at 859.807 kb on - strand at 859.807 kb on - strand at 859.851 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.0016 mg/ml remove 857,082 - -0.7 857,082 - +0.2 857,088 + +0.6 857,088 + -0.9 857,088 + +0.0 857,089 - +0.5 857,089 - -0.3 857,123 + +0.6 857,123 + -0.1 857,476 - Pf6N2E2_747 0.43 -1.8 857,707 - Pf6N2E2_747 0.69 +0.4 857,752 + Pf6N2E2_747 0.74 -1.4 857,831 + Pf6N2E2_747 0.83 +0.6 857,831 + Pf6N2E2_747 0.83 +0.6 857,831 + Pf6N2E2_747 0.83 -0.6 857,831 + Pf6N2E2_747 0.83 -1.3 857,832 - Pf6N2E2_747 0.83 -0.8 857,832 - Pf6N2E2_747 0.83 +0.3 857,844 + Pf6N2E2_747 0.84 +0.3 857,844 + Pf6N2E2_747 0.84 -0.2 857,844 + Pf6N2E2_747 0.84 -1.0 857,845 - Pf6N2E2_747 0.84 +0.7 857,980 + +0.7 858,163 + -0.4 858,163 + -0.3 858,302 - Pf6N2E2_748 0.24 +0.2 858,419 - Pf6N2E2_748 0.36 -1.3 858,419 - Pf6N2E2_748 0.36 +0.5 858,419 - Pf6N2E2_748 0.36 +0.3 858,433 + Pf6N2E2_748 0.38 -1.0 858,433 + Pf6N2E2_748 0.38 +0.7 858,613 + Pf6N2E2_748 0.57 +0.2 858,614 - Pf6N2E2_748 0.58 +1.0 858,614 - Pf6N2E2_748 0.58 -0.9 858,833 + Pf6N2E2_748 0.81 +0.0 858,833 + Pf6N2E2_748 0.81 +3.5 858,910 + Pf6N2E2_748 0.90 +2.0 858,917 - -0.7 858,934 + +0.1 858,935 - -1.3 858,935 - -0.6 859,104 + Pf6N2E2_749 0.21 -1.2 859,104 + Pf6N2E2_749 0.21 -0.2 859,104 + Pf6N2E2_749 0.21 -1.5 859,104 + Pf6N2E2_749 0.21 +0.5 859,104 + Pf6N2E2_749 0.21 -0.4 859,104 + Pf6N2E2_749 0.21 -0.2 859,104 + Pf6N2E2_749 0.21 -0.1 859,105 - Pf6N2E2_749 0.21 +0.8 859,105 - Pf6N2E2_749 0.21 -0.7 859,443 - +1.3 859,754 + -1.0 859,754 + -1.8 859,754 + +0.3 859,754 + -0.4 859,754 + +0.1 859,754 + +0.3 859,754 + +0.7 859,754 + +1.1 859,754 + +0.6 859,755 - +0.1 859,755 - -0.2 859,755 - -0.6 859,755 - +0.1 859,755 - -0.2 859,755 - +1.1 859,755 - +0.1 859,755 - +1.1 859,807 - +0.2 859,807 - -0.5 859,851 + +0.9
Or see this region's nucleotide sequence