Strain Fitness in Pantoea sp. MT58 around IAI47_16145

Experiment: Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_16130 and IAI47_16135 overlap by 20 nucleotidesIAI47_16135 and IAI47_16140 are separated by 3 nucleotidesIAI47_16140 and IAI47_16145 overlap by 1 nucleotidesIAI47_16145 and IAI47_16150 are separated by 29 nucleotides IAI47_16130: IAI47_16130 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 3,415,050 to 3,416,003 _16130 IAI47_16135: IAI47_16135 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 3,415,984 to 3,416,454 _16135 IAI47_16140: IAI47_16140 - signal peptidase II, at 3,416,458 to 3,416,964 _16140 IAI47_16145: IAI47_16145 - isoleucine--tRNA ligase, at 3,416,964 to 3,419,780 _16145 IAI47_16150: IAI47_16150 - bifunctional riboflavin kinase/FAD synthetase, at 3,419,810 to 3,420,739 _16150 Position (kb) 3416 3417 3418 3419 3420Strain fitness (log2 ratio) -1 0 1 2at 3416.042 kb on - strand, within IAI47_16135at 3416.042 kb on - strand, within IAI47_16135at 3416.042 kb on - strand, within IAI47_16135at 3416.042 kb on - strand, within IAI47_16135at 3416.042 kb on - strand, within IAI47_16135at 3416.095 kb on - strand, within IAI47_16135at 3416.095 kb on - strand, within IAI47_16135at 3416.095 kb on - strand, within IAI47_16135at 3416.095 kb on - strand, within IAI47_16135at 3416.194 kb on - strand, within IAI47_16135at 3416.194 kb on - strand, within IAI47_16135at 3416.214 kb on - strand, within IAI47_16135at 3416.266 kb on - strand, within IAI47_16135at 3416.266 kb on - strand, within IAI47_16135at 3416.410 kb on - strandat 3416.460 kb on - strandat 3416.460 kb on - strandat 3420.772 kb on - strandat 3420.772 kb on - strandat 3420.772 kb on - strandat 3420.772 kb on - strandat 3420.774 kb on - strandat 3420.774 kb on - strandat 3420.774 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
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3,416,042 - IAI47_16135 0.12 -0.7
3,416,042 - IAI47_16135 0.12 +1.4
3,416,042 - IAI47_16135 0.12 +2.2
3,416,042 - IAI47_16135 0.12 -0.7
3,416,042 - IAI47_16135 0.12 +1.5
3,416,095 - IAI47_16135 0.24 +1.8
3,416,095 - IAI47_16135 0.24 -0.4
3,416,095 - IAI47_16135 0.24 +0.6
3,416,095 - IAI47_16135 0.24 +0.4
3,416,194 - IAI47_16135 0.45 -0.4
3,416,194 - IAI47_16135 0.45 -0.4
3,416,214 - IAI47_16135 0.49 +0.1
3,416,266 - IAI47_16135 0.60 -1.3
3,416,266 - IAI47_16135 0.60 -1.1
3,416,410 - -0.2
3,416,460 - -0.3
3,416,460 - -0.7
3,420,772 - -0.6
3,420,772 - +0.3
3,420,772 - +1.4
3,420,772 - -0.9
3,420,774 - +1.2
3,420,774 - +1.5
3,420,774 - +0.4

Or see this region's nucleotide sequence