Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS01355

Experiment: D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS01350 and HSERO_RS01355 are separated by 95 nucleotidesHSERO_RS01355 and HSERO_RS01360 are separated by 348 nucleotides HSERO_RS01350: HSERO_RS01350 - beta-galactosidase, at 289,392 to 291,368 _RS01350 HSERO_RS01355: HSERO_RS01355 - sugar ABC transporter ATP-binding protein, at 291,464 to 292,609 _RS01355 HSERO_RS01360: HSERO_RS01360 - LacI family transcription regulator, at 292,958 to 293,974 _RS01360 Position (kb) 291 292 293Strain fitness (log2 ratio) -2 -1 0 1at 290.638 kb on - strand, within HSERO_RS01350at 290.820 kb on - strand, within HSERO_RS01350at 290.822 kb on - strand, within HSERO_RS01350at 290.875 kb on - strand, within HSERO_RS01350at 290.970 kb on + strand, within HSERO_RS01350at 291.161 kb on + strandat 291.169 kb on - strand, within HSERO_RS01350at 291.180 kb on - strandat 291.251 kb on - strandat 291.404 kb on - strandat 291.511 kb on - strandat 291.516 kb on - strandat 291.647 kb on + strand, within HSERO_RS01355at 291.744 kb on + strand, within HSERO_RS01355at 291.930 kb on - strand, within HSERO_RS01355at 292.043 kb on - strand, within HSERO_RS01355at 292.044 kb on + strand, within HSERO_RS01355at 292.147 kb on + strand, within HSERO_RS01355at 292.205 kb on - strand, within HSERO_RS01355at 292.223 kb on - strand, within HSERO_RS01355at 292.257 kb on + strand, within HSERO_RS01355at 292.359 kb on - strand, within HSERO_RS01355at 292.568 kb on + strandat 292.568 kb on + strandat 292.602 kb on - strandat 292.602 kb on - strandat 292.804 kb on - strandat 292.877 kb on + strandat 292.914 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days
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290,638 - HSERO_RS01350 0.63 -0.4
290,820 - HSERO_RS01350 0.72 +0.4
290,822 - HSERO_RS01350 0.72 -0.8
290,875 - HSERO_RS01350 0.75 +0.5
290,970 + HSERO_RS01350 0.80 +0.2
291,161 + +0.3
291,169 - HSERO_RS01350 0.90 +0.5
291,180 - +0.0
291,251 - -0.9
291,404 - -0.5
291,511 - +0.2
291,516 - -0.2
291,647 + HSERO_RS01355 0.16 -0.1
291,744 + HSERO_RS01355 0.24 -0.1
291,930 - HSERO_RS01355 0.41 -0.2
292,043 - HSERO_RS01355 0.51 +1.1
292,044 + HSERO_RS01355 0.51 +0.0
292,147 + HSERO_RS01355 0.60 -0.1
292,205 - HSERO_RS01355 0.65 -1.3
292,223 - HSERO_RS01355 0.66 -0.4
292,257 + HSERO_RS01355 0.69 +0.2
292,359 - HSERO_RS01355 0.78 +0.1
292,568 + -0.1
292,568 + -0.9
292,602 - -1.9
292,602 - +0.0
292,804 - -0.6
292,877 + +0.1
292,914 + -0.8

Or see this region's nucleotide sequence