Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02475

Experiment: PYE 0.5x 25C survival rep3 28 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 0.5x 25C survival rep3 28 days
2,619,119	+				+0.7
2,619,119	+				+1.5
2,619,119	+				+0.9
2,619,127	-				-1.3
2,619,142	+				+0.7
2,619,142	+				+0.7
2,619,172	-				-1.9
2,619,172	-				-0.7
2,619,212	+				+0.9
2,619,221	+				+1.3
2,619,260	+				+0.8
2,619,263	-				-1.0
2,619,277	+				-0.5
2,619,285	-				+1.3
2,619,302	+				+0.8
2,619,316	-				+1.0
2,619,335	+				+0.3
2,619,335	+				-0.2
2,619,343	-				+0.7
2,619,352	+				-1.2
2,619,360	-				-0.8
2,619,362	+				-0.3
2,619,398	+				-1.0
2,619,398	+				+1.0
2,619,398	+				-0.4
2,619,406	-				+1.1
2,619,412	+				+2.0
2,619,412	+				-1.3
2,619,412	+				-1.8
2,619,420	-				+0.4
2,619,420	-				+0.4
2,619,420	-				-1.8
2,619,425	-				-1.1
2,619,439	-				-0.1
2,619,488	+				+0.7
2,619,488	+				+0.3
2,619,519	-				-0.4
2,619,549	+		CCNA_02474	0.13	+0.0
2,619,554	+		CCNA_02474	0.14	-0.4
2,619,646	-		CCNA_02474	0.34	+0.5
2,619,659	+		CCNA_02474	0.36	+1.0
2,619,662	-		CCNA_02474	0.37	-4.1
2,619,666	-		CCNA_02474	0.38	-0.4
2,619,666	-		CCNA_02474	0.38	-3.3
2,619,714	+		CCNA_02474	0.48	-1.9
2,619,732	+		CCNA_02474	0.52	-0.3
2,619,741	+		CCNA_02474	0.54	-2.8
2,619,766	-		CCNA_02474	0.59	-3.2
2,619,769	+		CCNA_02474	0.60	-0.5
2,619,777	-		CCNA_02474	0.61	-1.6
2,619,777	-		CCNA_02474	0.61	-1.2
2,619,797	+		CCNA_02474	0.65	+0.5
2,619,806	+		CCNA_02474	0.67	+1.5
2,619,815	-		CCNA_02474	0.69	-2.4
2,619,848	-		CCNA_02474	0.76	-1.0
2,619,917	+				-1.1
2,619,927	-				-1.2
2,619,954	-				+0.1
2,619,954	-				+1.5
2,619,956	+				-3.0
2,620,021	+				+2.0
2,620,021	+				-2.2
2,620,021	+				-1.0
2,620,022	+				+0.0
2,620,029	-				-1.1
2,620,037	+				+0.5
2,620,037	+				-1.3
2,620,045	-				-0.9
2,620,045	-				+1.0
2,620,064	+				-0.2
2,620,138	+		CCNA_02475	0.12	-0.5
2,620,146	-		CCNA_02475	0.13	-0.4
2,620,146	-		CCNA_02475	0.13	-0.9
2,620,146	-		CCNA_02475	0.13	+2.0
2,620,146	-		CCNA_02475	0.13	-1.9
2,620,189	-		CCNA_02475	0.19	-0.9
2,620,203	+		CCNA_02475	0.21	-0.3
2,620,203	+		CCNA_02475	0.21	-0.3
2,620,211	-		CCNA_02475	0.22	-1.9
2,620,224	+		CCNA_02475	0.24	-1.3
2,620,232	-		CCNA_02475	0.25	-0.7
2,620,261	-		CCNA_02475	0.29	-2.3
2,620,319	+		CCNA_02475	0.37	-0.5
2,620,327	-		CCNA_02475	0.38	-2.3
2,620,327	-		CCNA_02475	0.38	-3.3
2,620,327	-		CCNA_02475	0.38	-1.2
2,620,327	-		CCNA_02475	0.38	-2.8
2,620,339	-		CCNA_02475	0.39	-1.2
2,620,344	+		CCNA_02475	0.40	+0.5
2,620,347	-		CCNA_02475	0.41	-2.0
2,620,352	-		CCNA_02475	0.41	+0.0
2,620,352	-		CCNA_02475	0.41	-2.8
2,620,352	-		CCNA_02475	0.41	-1.7
2,620,357	-		CCNA_02475	0.42	-2.6
2,620,376	-		CCNA_02475	0.44	-2.0
2,620,391	+		CCNA_02475	0.47	-0.5
2,620,412	-		CCNA_02475	0.49	-2.2
2,620,477	-		CCNA_02475	0.58	-2.5
2,620,500	-		CCNA_02475	0.61	-0.7
2,620,553	-		CCNA_02475	0.69	-2.3
2,620,578	+		CCNA_02475	0.72	+1.0
2,620,586	-		CCNA_02475	0.73	-1.6
2,620,586	-		CCNA_02475	0.73	-3.8
2,620,586	-		CCNA_02475	0.73	-4.1
2,620,586	-		CCNA_02475	0.73	-1.6
2,620,586	-		CCNA_02475	0.73	-2.1
2,620,626	-		CCNA_02475	0.79	-3.1
2,620,626	-		CCNA_02475	0.79	-1.3
2,620,626	-		CCNA_02475	0.79	-0.8
2,620,628	+		CCNA_02475	0.79	+0.5
2,620,628	+		CCNA_02475	0.79	+0.5
2,620,628	+		CCNA_02475	0.79	-0.5
2,620,628	+		CCNA_02475	0.79	-3.3
2,620,628	+		CCNA_02475	0.79	-1.0
2,620,634	-		CCNA_02475	0.80	-1.5
2,620,634	-		CCNA_02475	0.80	-3.0
2,620,636	-		CCNA_02475	0.80	-1.7
2,620,636	-		CCNA_02475	0.80	-3.6
2,620,636	-		CCNA_02475	0.80	-1.4
2,620,636	-		CCNA_02475	0.80	-0.8
2,620,636	-		CCNA_02475	0.80	-3.0
2,620,636	-		CCNA_02475	0.80	-1.2
2,620,636	-		CCNA_02475	0.80	-3.5
2,620,636	-		CCNA_02475	0.80	-2.0
2,620,669	-		CCNA_02475	0.84	-0.8
2,620,704	+		CCNA_02475	0.89	-2.3
2,620,722	-				-1.8
2,620,722	-				-3.5
2,620,778	+				-0.5
2,620,778	+				+0.7
2,620,786	-				-0.1
2,620,790	+				-0.6
2,620,820	-				+1.3
2,620,923	-				-1.3
2,620,927	+				-1.2
2,620,927	+				+0.5
2,620,927	+				-1.1
2,620,927	+				+0.0
2,620,935	-				-1.1
2,620,957	-				-1.7
2,620,966	+				+0.8
2,620,974	+				-1.5
2,620,974	+				-0.5
2,620,982	-				-0.5
2,620,997	+				+0.2
2,620,997	+				+0.2
2,620,997	+				+0.6
2,620,997	+				-0.4
2,620,997	+				+0.6
2,620,997	+				+0.7
2,620,997	+				-0.2
2,621,005	-				-0.5
2,621,005	-				-0.8
2,621,023	+		CCNA_02476	0.10	-0.0
2,621,031	-		CCNA_02476	0.11	+0.0
2,621,082	-		CCNA_02476	0.16	+0.0
2,621,082	-		CCNA_02476	0.16	+0.0
2,621,082	-		CCNA_02476	0.16	-2.5
2,621,101	+		CCNA_02476	0.18	-1.3
2,621,101	+		CCNA_02476	0.18	-0.8
2,621,108	+		CCNA_02476	0.18	-3.6
2,621,110	-		CCNA_02476	0.19	-1.3
2,621,116	-		CCNA_02476	0.19	+2.0
2,621,153	+		CCNA_02476	0.23	+0.8
2,621,153	+		CCNA_02476	0.23	+1.9
2,621,161	-		CCNA_02476	0.23	-2.0
2,621,168	+		CCNA_02476	0.24	+0.4
2,621,198	+		CCNA_02476	0.27	-0.1
2,621,246	+		CCNA_02476	0.31	-1.5
2,621,308	+		CCNA_02476	0.37	-0.9
2,621,308	+		CCNA_02476	0.37	+2.0
2,621,308	+		CCNA_02476	0.37	-1.7
2,621,316	-		CCNA_02476	0.38	+1.0
2,621,316	-		CCNA_02476	0.38	-3.2
2,621,316	-		CCNA_02476	0.38	+2.0
2,621,330	-		CCNA_02476	0.39	+1.4
2,621,354	-		CCNA_02476	0.41	-2.2
2,621,396	+		CCNA_02476	0.45	-2.3
2,621,396	+		CCNA_02476	0.45	+0.8
2,621,430	+		CCNA_02476	0.48	+0.0
2,621,438	-		CCNA_02476	0.49	+0.5
2,621,440	+		CCNA_02476	0.49	-0.3
2,621,443	-		CCNA_02476	0.49	-2.3
2,621,551	-		CCNA_02476	0.60	-0.3
2,621,553	+		CCNA_02476	0.60	-0.3
2,621,620	+		CCNA_02476	0.66	-0.3
2,621,637	+		CCNA_02476	0.68	-0.3
2,621,644	-		CCNA_02476	0.68	-2.0
2,621,644	-		CCNA_02476	0.68	-2.0
2,621,701	+		CCNA_02476	0.73	+0.7
2,621,737	+		CCNA_02476	0.77	+0.0
2,621,743	+		CCNA_02476	0.77	+0.5
2,621,751	-		CCNA_02476	0.78	-0.7
2,621,763	+		CCNA_02476	0.79	-1.0
2,621,764	-		CCNA_02476	0.79	+3.4