Experiment: PYE 0.5x 25C survival rep3 28 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00785 and CCNA_03938 are separated by 183 nucleotides CCNA_03938 and CCNA_00787 are separated by 111 nucleotides CCNA_00787 and CCNA_00788 are separated by 133 nucleotides
CCNA_00785: CCNA_00785 - tRNA methyltransferase/FAD-dependent oxidoreductase MnmC, at 848,157 to 849,932
_00785
CCNA_03938: CCNA_03938 - hypothetical protein, at 850,116 to 850,442
_03938
CCNA_00787: CCNA_00787 - chemotaxis motA protein, at 850,554 to 851,420
_00787
CCNA_00788: CCNA_00788 - transporter, major facilitator superfamily, at 851,554 to 852,870
_00788
Position (kb) 850
851
852 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 849.592 kb on - strand, within CCNA_00785 at 849.602 kb on + strand, within CCNA_00785 at 849.602 kb on + strand, within CCNA_00785 at 849.610 kb on - strand, within CCNA_00785 at 849.610 kb on - strand, within CCNA_00785 at 849.624 kb on - strand, within CCNA_00785 at 849.624 kb on - strand, within CCNA_00785 at 849.661 kb on + strand, within CCNA_00785 at 849.669 kb on + strand, within CCNA_00785 at 849.677 kb on - strand, within CCNA_00785 at 849.729 kb on + strand, within CCNA_00785 at 849.729 kb on + strand, within CCNA_00785 at 849.729 kb on + strand, within CCNA_00785 at 849.737 kb on - strand, within CCNA_00785 at 849.737 kb on - strand, within CCNA_00785 at 849.761 kb on + strand at 849.761 kb on + strand at 849.769 kb on - strand at 849.857 kb on - strand at 849.867 kb on + strand at 849.870 kb on - strand at 849.872 kb on - strand at 849.879 kb on - strand at 849.880 kb on - strand at 849.880 kb on - strand at 849.928 kb on + strand at 849.935 kb on + strand at 849.943 kb on - strand at 849.948 kb on + strand at 849.948 kb on + strand at 849.956 kb on - strand at 849.956 kb on - strand at 849.966 kb on - strand at 849.966 kb on - strand at 849.977 kb on + strand at 849.989 kb on + strand at 850.035 kb on - strand at 850.035 kb on - strand at 850.037 kb on + strand at 850.037 kb on + strand at 850.045 kb on - strand at 850.045 kb on - strand at 850.057 kb on - strand at 850.057 kb on - strand at 850.057 kb on - strand at 850.057 kb on - strand at 850.062 kb on - strand at 850.062 kb on - strand at 850.080 kb on + strand at 850.081 kb on + strand at 850.089 kb on - strand at 850.099 kb on - strand at 850.126 kb on + strand at 850.126 kb on + strand at 850.134 kb on - strand at 850.158 kb on - strand, within CCNA_03938 at 850.273 kb on + strand, within CCNA_03938 at 850.280 kb on - strand, within CCNA_03938 at 850.281 kb on - strand, within CCNA_03938 at 850.314 kb on - strand, within CCNA_03938 at 850.314 kb on - strand, within CCNA_03938 at 850.321 kb on + strand, within CCNA_03938 at 850.327 kb on + strand, within CCNA_03938 at 850.353 kb on + strand, within CCNA_03938 at 850.391 kb on - strand, within CCNA_03938 at 850.424 kb on + strand at 850.430 kb on + strand at 850.430 kb on + strand at 850.430 kb on + strand at 850.431 kb on + strand at 850.438 kb on + strand at 850.438 kb on - strand at 850.438 kb on - strand at 850.438 kb on - strand at 850.446 kb on - strand at 850.517 kb on - strand at 850.526 kb on + strand at 850.554 kb on - strand at 850.582 kb on + strand at 850.726 kb on + strand, within CCNA_00787 at 850.760 kb on + strand, within CCNA_00787 at 850.761 kb on + strand, within CCNA_00787 at 850.763 kb on - strand, within CCNA_00787 at 850.768 kb on - strand, within CCNA_00787 at 850.768 kb on - strand, within CCNA_00787 at 850.768 kb on - strand, within CCNA_00787 at 850.768 kb on - strand, within CCNA_00787 at 850.769 kb on - strand, within CCNA_00787 at 850.776 kb on - strand, within CCNA_00787 at 850.780 kb on + strand, within CCNA_00787 at 850.826 kb on - strand, within CCNA_00787 at 850.855 kb on - strand, within CCNA_00787 at 850.887 kb on + strand, within CCNA_00787 at 850.887 kb on + strand, within CCNA_00787 at 850.924 kb on - strand, within CCNA_00787 at 850.931 kb on - strand, within CCNA_00787 at 850.931 kb on - strand, within CCNA_00787 at 850.936 kb on - strand, within CCNA_00787 at 850.953 kb on - strand, within CCNA_00787 at 850.981 kb on + strand, within CCNA_00787 at 850.991 kb on + strand, within CCNA_00787 at 850.999 kb on - strand, within CCNA_00787 at 850.999 kb on - strand, within CCNA_00787 at 851.022 kb on - strand, within CCNA_00787 at 851.027 kb on + strand, within CCNA_00787 at 851.033 kb on + strand, within CCNA_00787 at 851.035 kb on - strand, within CCNA_00787 at 851.045 kb on - strand, within CCNA_00787 at 851.077 kb on - strand, within CCNA_00787 at 851.080 kb on + strand, within CCNA_00787 at 851.137 kb on + strand, within CCNA_00787 at 851.137 kb on + strand, within CCNA_00787 at 851.145 kb on - strand, within CCNA_00787 at 851.183 kb on + strand, within CCNA_00787 at 851.183 kb on - strand, within CCNA_00787 at 851.193 kb on + strand, within CCNA_00787 at 851.196 kb on - strand, within CCNA_00787 at 851.196 kb on - strand, within CCNA_00787 at 851.201 kb on + strand, within CCNA_00787 at 851.201 kb on - strand, within CCNA_00787 at 851.201 kb on - strand, within CCNA_00787 at 851.207 kb on + strand, within CCNA_00787 at 851.208 kb on - strand, within CCNA_00787 at 851.243 kb on + strand, within CCNA_00787 at 851.248 kb on + strand, within CCNA_00787 at 851.251 kb on - strand, within CCNA_00787 at 851.256 kb on - strand, within CCNA_00787 at 851.309 kb on + strand, within CCNA_00787 at 851.337 kb on - strand at 851.350 kb on - strand at 851.373 kb on + strand at 851.373 kb on + strand at 851.381 kb on - strand at 851.399 kb on - strand at 851.419 kb on + strand at 851.525 kb on + strand at 851.537 kb on + strand at 851.545 kb on - strand at 851.575 kb on - strand at 851.632 kb on + strand at 851.657 kb on - strand at 851.708 kb on - strand, within CCNA_00788 at 851.730 kb on + strand, within CCNA_00788 at 851.730 kb on + strand, within CCNA_00788 at 851.743 kb on - strand, within CCNA_00788 at 851.751 kb on + strand, within CCNA_00788 at 851.765 kb on + strand, within CCNA_00788 at 851.765 kb on + strand, within CCNA_00788 at 851.773 kb on - strand, within CCNA_00788 at 851.780 kb on + strand, within CCNA_00788 at 851.801 kb on - strand, within CCNA_00788 at 851.823 kb on + strand, within CCNA_00788 at 851.831 kb on - strand, within CCNA_00788 at 851.842 kb on + strand, within CCNA_00788 at 851.842 kb on + strand, within CCNA_00788 at 851.857 kb on + strand, within CCNA_00788 at 851.865 kb on - strand, within CCNA_00788 at 851.870 kb on - strand, within CCNA_00788 at 851.875 kb on - strand, within CCNA_00788 at 851.888 kb on + strand, within CCNA_00788 at 851.888 kb on + strand, within CCNA_00788 at 851.891 kb on - strand, within CCNA_00788 at 851.896 kb on - strand, within CCNA_00788 at 851.898 kb on + strand, within CCNA_00788 at 851.919 kb on + strand, within CCNA_00788 at 851.919 kb on + strand, within CCNA_00788 at 851.919 kb on + strand, within CCNA_00788 at 851.927 kb on - strand, within CCNA_00788 at 851.927 kb on - strand, within CCNA_00788 at 851.953 kb on + strand, within CCNA_00788 at 851.953 kb on + strand, within CCNA_00788 at 851.953 kb on + strand, within CCNA_00788 at 851.981 kb on + strand, within CCNA_00788 at 851.989 kb on - strand, within CCNA_00788 at 852.023 kb on + strand, within CCNA_00788 at 852.023 kb on + strand, within CCNA_00788 at 852.023 kb on + strand, within CCNA_00788 at 852.023 kb on + strand, within CCNA_00788 at 852.023 kb on + strand, within CCNA_00788 at 852.023 kb on + strand, within CCNA_00788 at 852.031 kb on - strand, within CCNA_00788 at 852.031 kb on - strand at 852.050 kb on - strand, within CCNA_00788 at 852.080 kb on + strand, within CCNA_00788 at 852.080 kb on + strand, within CCNA_00788 at 852.080 kb on + strand, within CCNA_00788 at 852.088 kb on - strand, within CCNA_00788 at 852.088 kb on - strand, within CCNA_00788 at 852.093 kb on - strand, within CCNA_00788 at 852.095 kb on + strand, within CCNA_00788 at 852.098 kb on - strand, within CCNA_00788 at 852.103 kb on - strand, within CCNA_00788 at 852.103 kb on - strand, within CCNA_00788 at 852.206 kb on + strand, within CCNA_00788 at 852.258 kb on + strand, within CCNA_00788 at 852.258 kb on + strand, within CCNA_00788 at 852.258 kb on + strand, within CCNA_00788 at 852.258 kb on + strand, within CCNA_00788 at 852.258 kb on + strand, within CCNA_00788 at 852.266 kb on - strand, within CCNA_00788 at 852.307 kb on + strand, within CCNA_00788 at 852.307 kb on + strand, within CCNA_00788 at 852.307 kb on + strand, within CCNA_00788 at 852.314 kb on + strand, within CCNA_00788 at 852.315 kb on - strand, within CCNA_00788 at 852.315 kb on - strand, within CCNA_00788 at 852.315 kb on - strand, within CCNA_00788 at 852.315 kb on - strand, within CCNA_00788 at 852.326 kb on - strand, within CCNA_00788 at 852.327 kb on - strand, within CCNA_00788 at 852.352 kb on - strand, within CCNA_00788 at 852.360 kb on + strand, within CCNA_00788 at 852.377 kb on + strand, within CCNA_00788 at 852.387 kb on + strand, within CCNA_00788 at 852.395 kb on - strand, within CCNA_00788
Per-strain Table
Position Strand Gene LocusTag Fraction PYE 0.5x 25C survival rep3 28 days remove 849,592 - CCNA_00785 0.81 +0.2 849,602 + CCNA_00785 0.81 -1.5 849,602 + CCNA_00785 0.81 +1.1 849,610 - CCNA_00785 0.82 +0.8 849,610 - CCNA_00785 0.82 -2.9 849,624 - CCNA_00785 0.83 +0.8 849,624 - CCNA_00785 0.83 -0.4 849,661 + CCNA_00785 0.85 -1.6 849,669 + CCNA_00785 0.85 -1.1 849,677 - CCNA_00785 0.86 +0.5 849,729 + CCNA_00785 0.89 +0.0 849,729 + CCNA_00785 0.89 -1.7 849,729 + CCNA_00785 0.89 -0.9 849,737 - CCNA_00785 0.89 -1.6 849,737 - CCNA_00785 0.89 -2.0 849,761 + -1.3 849,761 + +0.5 849,769 - -1.2 849,857 - -0.5 849,867 + -0.8 849,870 - +1.0 849,872 - +1.6 849,879 - -0.1 849,880 - -0.3 849,880 - -0.1 849,928 + -0.6 849,935 + +0.0 849,943 - +0.3 849,948 + -0.4 849,948 + -1.3 849,956 - +0.3 849,956 - -0.4 849,966 - +0.0 849,966 - +1.0 849,977 + -1.1 849,989 + +1.0 850,035 - +1.1 850,035 - +0.6 850,037 + -1.3 850,037 + +1.1 850,045 - +0.5 850,045 - +1.2 850,057 - +1.7 850,057 - +1.2 850,057 - -0.8 850,057 - +1.2 850,062 - +1.6 850,062 - +1.2 850,080 + -1.9 850,081 + -0.9 850,089 - +2.2 850,099 - +1.1 850,126 + +0.3 850,126 + +0.6 850,134 - +0.9 850,158 - CCNA_03938 0.13 +0.1 850,273 + CCNA_03938 0.48 -0.7 850,280 - CCNA_03938 0.50 -0.2 850,281 - CCNA_03938 0.50 +1.1 850,314 - CCNA_03938 0.61 +0.6 850,314 - CCNA_03938 0.61 -0.1 850,321 + CCNA_03938 0.63 -2.0 850,327 + CCNA_03938 0.65 -1.9 850,353 + CCNA_03938 0.72 -3.6 850,391 - CCNA_03938 0.84 -0.4 850,424 + -0.2 850,430 + -0.6 850,430 + -0.2 850,430 + -2.1 850,431 + -0.1 850,438 + +1.3 850,438 - +0.3 850,438 - -0.1 850,438 - -0.5 850,446 - -1.8 850,517 - -0.7 850,526 + -1.5 850,554 - +0.6 850,582 + +1.3 850,726 + CCNA_00787 0.20 -0.2 850,760 + CCNA_00787 0.24 -1.6 850,761 + CCNA_00787 0.24 +0.7 850,763 - CCNA_00787 0.24 +1.9 850,768 - CCNA_00787 0.25 +1.5 850,768 - CCNA_00787 0.25 +1.6 850,768 - CCNA_00787 0.25 +2.0 850,768 - CCNA_00787 0.25 +1.3 850,769 - CCNA_00787 0.25 +0.1 850,776 - CCNA_00787 0.26 +1.1 850,780 + CCNA_00787 0.26 +1.4 850,826 - CCNA_00787 0.31 +1.8 850,855 - CCNA_00787 0.35 -0.5 850,887 + CCNA_00787 0.38 +0.1 850,887 + CCNA_00787 0.38 +1.4 850,924 - CCNA_00787 0.43 +1.0 850,931 - CCNA_00787 0.43 +1.5 850,931 - CCNA_00787 0.43 +0.7 850,936 - CCNA_00787 0.44 +1.1 850,953 - CCNA_00787 0.46 +1.2 850,981 + CCNA_00787 0.49 -0.5 850,991 + CCNA_00787 0.50 -0.3 850,999 - CCNA_00787 0.51 +1.3 850,999 - CCNA_00787 0.51 +1.8 851,022 - CCNA_00787 0.54 +1.4 851,027 + CCNA_00787 0.55 -0.6 851,033 + CCNA_00787 0.55 -2.2 851,035 - CCNA_00787 0.55 +1.9 851,045 - CCNA_00787 0.57 +1.6 851,077 - CCNA_00787 0.60 +2.1 851,080 + CCNA_00787 0.61 +0.3 851,137 + CCNA_00787 0.67 -1.0 851,137 + CCNA_00787 0.67 +1.5 851,145 - CCNA_00787 0.68 +1.1 851,183 + CCNA_00787 0.73 +3.1 851,183 - CCNA_00787 0.73 +1.6 851,193 + CCNA_00787 0.74 -0.1 851,196 - CCNA_00787 0.74 +1.0 851,196 - CCNA_00787 0.74 +1.5 851,201 + CCNA_00787 0.75 -1.1 851,201 - CCNA_00787 0.75 +1.0 851,201 - CCNA_00787 0.75 +1.8 851,207 + CCNA_00787 0.75 +0.5 851,208 - CCNA_00787 0.75 +1.5 851,243 + CCNA_00787 0.79 +0.3 851,248 + CCNA_00787 0.80 +0.9 851,251 - CCNA_00787 0.80 +2.0 851,256 - CCNA_00787 0.81 +0.9 851,309 + CCNA_00787 0.87 +0.5 851,337 - +2.1 851,350 - +1.5 851,373 + +0.4 851,373 + +0.4 851,381 - +2.7 851,399 - +1.5 851,419 + +1.5 851,525 + +0.7 851,537 + +0.9 851,545 - -1.1 851,575 - +1.1 851,632 + -2.5 851,657 - -1.3 851,708 - CCNA_00788 0.12 -1.7 851,730 + CCNA_00788 0.13 -1.1 851,730 + CCNA_00788 0.13 -2.5 851,743 - CCNA_00788 0.14 -0.9 851,751 + CCNA_00788 0.15 -0.5 851,765 + CCNA_00788 0.16 +0.3 851,765 + CCNA_00788 0.16 +1.1 851,773 - CCNA_00788 0.17 -0.5 851,780 + CCNA_00788 0.17 -0.5 851,801 - CCNA_00788 0.19 -2.2 851,823 + CCNA_00788 0.20 +0.7 851,831 - CCNA_00788 0.21 -0.7 851,842 + CCNA_00788 0.22 -0.7 851,842 + CCNA_00788 0.22 +0.2 851,857 + CCNA_00788 0.23 -1.5 851,865 - CCNA_00788 0.24 -1.5 851,870 - CCNA_00788 0.24 -1.3 851,875 - CCNA_00788 0.24 -2.6 851,888 + CCNA_00788 0.25 -0.3 851,888 + CCNA_00788 0.25 -0.2 851,891 - CCNA_00788 0.26 +1.1 851,896 - CCNA_00788 0.26 +1.5 851,898 + CCNA_00788 0.26 -0.4 851,919 + CCNA_00788 0.28 -0.6 851,919 + CCNA_00788 0.28 +0.0 851,919 + CCNA_00788 0.28 -0.8 851,927 - CCNA_00788 0.28 +2.1 851,927 - CCNA_00788 0.28 -0.8 851,953 + CCNA_00788 0.30 +0.8 851,953 + CCNA_00788 0.30 -0.4 851,953 + CCNA_00788 0.30 -2.3 851,981 + CCNA_00788 0.32 -1.9 851,989 - CCNA_00788 0.33 -0.3 852,023 + CCNA_00788 0.36 -2.0 852,023 + CCNA_00788 0.36 -0.0 852,023 + CCNA_00788 0.36 -1.7 852,023 + CCNA_00788 0.36 +0.1 852,023 + CCNA_00788 0.36 -0.4 852,023 + CCNA_00788 0.36 -0.4 852,031 - CCNA_00788 0.36 -1.3 852,031 - -2.3 852,050 - CCNA_00788 0.38 -2.8 852,080 + CCNA_00788 0.40 +0.5 852,080 + CCNA_00788 0.40 -0.6 852,080 + CCNA_00788 0.40 -0.2 852,088 - CCNA_00788 0.41 -3.2 852,088 - CCNA_00788 0.41 -3.9 852,093 - CCNA_00788 0.41 -2.5 852,095 + CCNA_00788 0.41 -0.5 852,098 - CCNA_00788 0.41 -2.9 852,103 - CCNA_00788 0.42 -0.7 852,103 - CCNA_00788 0.42 -1.2 852,206 + CCNA_00788 0.50 -2.4 852,258 + CCNA_00788 0.53 -0.8 852,258 + CCNA_00788 0.53 -1.5 852,258 + CCNA_00788 0.53 -0.9 852,258 + CCNA_00788 0.53 -1.2 852,258 + CCNA_00788 0.53 -0.5 852,266 - CCNA_00788 0.54 -1.5 852,307 + CCNA_00788 0.57 -2.1 852,307 + CCNA_00788 0.57 -0.4 852,307 + CCNA_00788 0.57 -1.1 852,314 + CCNA_00788 0.58 -2.7 852,315 - CCNA_00788 0.58 -1.8 852,315 - CCNA_00788 0.58 -1.5 852,315 - CCNA_00788 0.58 +2.1 852,315 - CCNA_00788 0.58 -1.2 852,326 - CCNA_00788 0.59 -1.8 852,327 - CCNA_00788 0.59 -2.5 852,352 - CCNA_00788 0.61 +1.5 852,360 + CCNA_00788 0.61 -2.0 852,377 + CCNA_00788 0.62 -1.9 852,387 + CCNA_00788 0.63 -1.7 852,395 - CCNA_00788 0.64 +0.9
Or see this region's nucleotide sequence