Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00232

Experiment: PYE 0.5x 25C survival rep3 28 days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_00230 and CCNA_00231 are separated by 51 nucleotidesCCNA_00231 and CCNA_00232 overlap by 4 nucleotidesCCNA_00232 and CCNA_00233 are separated by 128 nucleotides CCNA_00230: CCNA_00230 - ribosomal large subunit pseudouridine synthase B, at 245,765 to 247,003 _00230 CCNA_00231: CCNA_00231 - tRNA-specific adenosine deaminase, at 247,055 to 247,540 _00231 CCNA_00232: CCNA_00232 - hypothetical protein, at 247,537 to 247,953 _00232 CCNA_00233: CCNA_00233 - UDP-N-acetylglucosamine 4,6-dehydratase, at 248,082 to 249,119 _00233 Position (kb) 247 248Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 246.551 kb on - strand, within CCNA_00230at 246.562 kb on + strand, within CCNA_00230at 246.562 kb on + strand, within CCNA_00230at 246.570 kb on - strand, within CCNA_00230at 246.570 kb on - strand, within CCNA_00230at 246.601 kb on + strand, within CCNA_00230at 246.609 kb on + strand, within CCNA_00230at 246.609 kb on + strand, within CCNA_00230at 246.617 kb on + strand, within CCNA_00230at 246.625 kb on - strand, within CCNA_00230at 246.657 kb on + strand, within CCNA_00230at 246.665 kb on - strand, within CCNA_00230at 246.665 kb on - strand, within CCNA_00230at 246.665 kb on - strand, within CCNA_00230at 246.665 kb on - strand, within CCNA_00230at 246.665 kb on - strand, within CCNA_00230at 246.665 kb on - strand, within CCNA_00230at 246.727 kb on + strand, within CCNA_00230at 246.735 kb on - strand, within CCNA_00230at 246.765 kb on + strand, within CCNA_00230at 246.786 kb on - strand, within CCNA_00230at 246.824 kb on + strand, within CCNA_00230at 246.832 kb on - strand, within CCNA_00230at 246.858 kb on + strand, within CCNA_00230at 246.866 kb on - strand, within CCNA_00230at 246.866 kb on - strand, within CCNA_00230at 246.884 kb on - strandat 246.905 kb on + strandat 246.913 kb on - strandat 246.936 kb on - strandat 246.960 kb on + strandat 246.977 kb on + strandat 246.980 kb on - strandat 247.018 kb on + strandat 247.021 kb on - strandat 247.021 kb on - strandat 247.021 kb on - strandat 247.040 kb on + strandat 247.072 kb on - strandat 247.076 kb on + strandat 247.084 kb on - strandat 247.084 kb on - strandat 247.522 kb on + strandat 247.522 kb on + strandat 247.530 kb on - strandat 247.558 kb on + strandat 247.582 kb on + strand, within CCNA_00232at 247.587 kb on + strand, within CCNA_00232at 247.587 kb on + strand, within CCNA_00232at 247.595 kb on - strand, within CCNA_00232at 247.609 kb on - strand, within CCNA_00232at 247.633 kb on + strand, within CCNA_00232at 247.654 kb on - strand, within CCNA_00232at 247.656 kb on + strand, within CCNA_00232at 247.659 kb on - strand, within CCNA_00232at 247.664 kb on - strand, within CCNA_00232at 247.664 kb on - strand, within CCNA_00232at 247.664 kb on - strand, within CCNA_00232at 247.672 kb on - strand, within CCNA_00232at 247.673 kb on + strand, within CCNA_00232at 247.686 kb on - strand, within CCNA_00232at 247.692 kb on - strand, within CCNA_00232at 247.709 kb on + strand, within CCNA_00232at 247.709 kb on + strand, within CCNA_00232at 247.715 kb on + strand, within CCNA_00232at 247.717 kb on - strand, within CCNA_00232at 247.722 kb on - strand, within CCNA_00232at 247.732 kb on - strand, within CCNA_00232at 247.750 kb on + strand, within CCNA_00232at 247.750 kb on + strand, within CCNA_00232at 247.758 kb on - strand, within CCNA_00232at 247.758 kb on - strand, within CCNA_00232at 247.759 kb on + strand, within CCNA_00232at 247.808 kb on + strand, within CCNA_00232at 247.816 kb on - strand, within CCNA_00232at 247.816 kb on - strand, within CCNA_00232at 247.824 kb on + strand, within CCNA_00232at 247.850 kb on - strand, within CCNA_00232at 247.864 kb on - strand, within CCNA_00232at 247.864 kb on - strand, within CCNA_00232at 247.864 kb on - strand, within CCNA_00232at 247.889 kb on - strand, within CCNA_00232at 247.975 kb on + strandat 247.994 kb on - strandat 247.994 kb on - strandat 248.037 kb on + strandat 248.072 kb on - strandat 248.074 kb on + strandat 248.109 kb on + strandat 248.122 kb on + strandat 248.122 kb on + strandat 248.135 kb on - strandat 248.147 kb on + strandat 248.162 kb on + strandat 248.213 kb on - strand, within CCNA_00233at 248.227 kb on + strand, within CCNA_00233at 248.227 kb on + strand, within CCNA_00233at 248.235 kb on - strand, within CCNA_00233at 248.256 kb on - strand, within CCNA_00233at 248.256 kb on - strand, within CCNA_00233at 248.267 kb on + strand, within CCNA_00233at 248.275 kb on + strand, within CCNA_00233at 248.335 kb on + strand, within CCNA_00233at 248.335 kb on + strand, within CCNA_00233at 248.336 kb on - strand, within CCNA_00233at 248.397 kb on + strand, within CCNA_00233at 248.402 kb on + strand, within CCNA_00233at 248.405 kb on - strand, within CCNA_00233at 248.407 kb on + strand, within CCNA_00233at 248.410 kb on - strandat 248.417 kb on - strand, within CCNA_00233at 248.417 kb on - strand, within CCNA_00233at 248.429 kb on - strand, within CCNA_00233at 248.436 kb on - strand, within CCNA_00233at 248.454 kb on + strand, within CCNA_00233at 248.454 kb on + strand, within CCNA_00233at 248.458 kb on + strand, within CCNA_00233at 248.461 kb on - strand, within CCNA_00233at 248.462 kb on - strand, within CCNA_00233at 248.462 kb on - strand, within CCNA_00233at 248.463 kb on + strand, within CCNA_00233at 248.476 kb on - strand, within CCNA_00233at 248.493 kb on + strand, within CCNA_00233at 248.493 kb on + strand, within CCNA_00233at 248.505 kb on + strand, within CCNA_00233at 248.506 kb on - strand, within CCNA_00233at 248.518 kb on - strand, within CCNA_00233at 248.526 kb on + strand, within CCNA_00233at 248.528 kb on + strand, within CCNA_00233at 248.528 kb on + strand, within CCNA_00233at 248.528 kb on + strand, within CCNA_00233at 248.536 kb on - strand, within CCNA_00233at 248.556 kb on + strand, within CCNA_00233at 248.557 kb on - strand, within CCNA_00233at 248.564 kb on - strand, within CCNA_00233at 248.564 kb on - strand, within CCNA_00233at 248.564 kb on - strand, within CCNA_00233at 248.564 kb on - strand, within CCNA_00233at 248.564 kb on - strand, within CCNA_00233at 248.564 kb on - strand, within CCNA_00233at 248.564 kb on - strand, within CCNA_00233at 248.564 kb on - strand, within CCNA_00233at 248.606 kb on + strand, within CCNA_00233at 248.606 kb on + strand, within CCNA_00233at 248.606 kb on + strand, within CCNA_00233at 248.606 kb on + strand, within CCNA_00233at 248.606 kb on + strand, within CCNA_00233at 248.606 kb on + strand, within CCNA_00233at 248.614 kb on - strand, within CCNA_00233at 248.614 kb on - strand, within CCNA_00233at 248.614 kb on - strand, within CCNA_00233at 248.614 kb on - strand, within CCNA_00233at 248.614 kb on - strand, within CCNA_00233at 248.632 kb on - strand, within CCNA_00233at 248.647 kb on + strand, within CCNA_00233at 248.650 kb on + strand, within CCNA_00233at 248.650 kb on + strand, within CCNA_00233at 248.650 kb on + strand, within CCNA_00233at 248.650 kb on + strand, within CCNA_00233at 248.655 kb on - strand, within CCNA_00233at 248.658 kb on - strand, within CCNA_00233at 248.675 kb on + strand, within CCNA_00233at 248.723 kb on - strand, within CCNA_00233at 248.726 kb on + strand, within CCNA_00233at 248.726 kb on + strand, within CCNA_00233at 248.749 kb on - strand, within CCNA_00233at 248.790 kb on + strand, within CCNA_00233at 248.835 kb on - strand, within CCNA_00233at 248.837 kb on + strand, within CCNA_00233at 248.837 kb on + strand, within CCNA_00233at 248.842 kb on + strand, within CCNA_00233at 248.863 kb on + strand, within CCNA_00233at 248.898 kb on - strand, within CCNA_00233at 248.907 kb on + strand, within CCNA_00233at 248.907 kb on + strand, within CCNA_00233at 248.908 kb on - strand, within CCNA_00233at 248.915 kb on - strand, within CCNA_00233at 248.922 kb on + strand, within CCNA_00233at 248.925 kb on - strand, within CCNA_00233at 248.937 kb on + strandat 248.937 kb on + strand, within CCNA_00233

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE 0.5x 25C survival rep3 28 days
remove
246,551 - CCNA_00230 0.63 -2.0
246,562 + CCNA_00230 0.64 -0.7
246,562 + CCNA_00230 0.64 +1.9
246,570 - CCNA_00230 0.65 +0.4
246,570 - CCNA_00230 0.65 +0.4
246,601 + CCNA_00230 0.67 -0.1
246,609 + CCNA_00230 0.68 -1.5
246,609 + CCNA_00230 0.68 +0.3
246,617 + CCNA_00230 0.69 -0.7
246,625 - CCNA_00230 0.69 +0.3
246,657 + CCNA_00230 0.72 +1.9
246,665 - CCNA_00230 0.73 -0.0
246,665 - CCNA_00230 0.73 -1.9
246,665 - CCNA_00230 0.73 +0.2
246,665 - CCNA_00230 0.73 +0.8
246,665 - CCNA_00230 0.73 +0.7
246,665 - CCNA_00230 0.73 -0.2
246,727 + CCNA_00230 0.78 -0.8
246,735 - CCNA_00230 0.78 +1.2
246,765 + CCNA_00230 0.81 -0.4
246,786 - CCNA_00230 0.82 -1.2
246,824 + CCNA_00230 0.85 +1.3
246,832 - CCNA_00230 0.86 +0.4
246,858 + CCNA_00230 0.88 +0.2
246,866 - CCNA_00230 0.89 +1.0
246,866 - CCNA_00230 0.89 +0.9
246,884 - -0.8
246,905 + -1.8
246,913 - -2.1
246,936 - +0.8
246,960 + -0.2
246,977 + -2.2
246,980 - +0.6
247,018 + -0.1
247,021 - -0.3
247,021 - -0.1
247,021 - -0.5
247,040 + -2.2
247,072 - -0.4
247,076 + +0.3
247,084 - +0.8
247,084 - +0.8
247,522 + +0.5
247,522 + +0.9
247,530 - -1.4
247,558 + +2.7
247,582 + CCNA_00232 0.11 +0.4
247,587 + CCNA_00232 0.12 +2.1
247,587 + CCNA_00232 0.12 +1.9
247,595 - CCNA_00232 0.14 -1.2
247,609 - CCNA_00232 0.17 +0.8
247,633 + CCNA_00232 0.23 -0.4
247,654 - CCNA_00232 0.28 -1.4
247,656 + CCNA_00232 0.29 +1.5
247,659 - CCNA_00232 0.29 -1.7
247,664 - CCNA_00232 0.30 -0.0
247,664 - CCNA_00232 0.30 +0.5
247,664 - CCNA_00232 0.30 +3.5
247,672 - CCNA_00232 0.32 +0.2
247,673 + CCNA_00232 0.33 +0.3
247,686 - CCNA_00232 0.36 -0.2
247,692 - CCNA_00232 0.37 +0.7
247,709 + CCNA_00232 0.41 +1.9
247,709 + CCNA_00232 0.41 -1.7
247,715 + CCNA_00232 0.43 -0.6
247,717 - CCNA_00232 0.43 +1.1
247,722 - CCNA_00232 0.44 +2.9
247,732 - CCNA_00232 0.47 -0.4
247,750 + CCNA_00232 0.51 +0.7
247,750 + CCNA_00232 0.51 +1.2
247,758 - CCNA_00232 0.53 +0.0
247,758 - CCNA_00232 0.53 +1.4
247,759 + CCNA_00232 0.53 -0.2
247,808 + CCNA_00232 0.65 -1.7
247,816 - CCNA_00232 0.67 +1.8
247,816 - CCNA_00232 0.67 +1.1
247,824 + CCNA_00232 0.69 -0.7
247,850 - CCNA_00232 0.75 +0.4
247,864 - CCNA_00232 0.78 +1.5
247,864 - CCNA_00232 0.78 -0.4
247,864 - CCNA_00232 0.78 +1.3
247,889 - CCNA_00232 0.84 -0.3
247,975 + -2.3
247,994 - -2.2
247,994 - -2.9
248,037 + +1.0
248,072 - +0.7
248,074 + +1.4
248,109 + +0.6
248,122 + -0.1
248,122 + +1.6
248,135 - +0.5
248,147 + +0.5
248,162 + +1.9
248,213 - CCNA_00233 0.13 -0.5
248,227 + CCNA_00233 0.14 +0.7
248,227 + CCNA_00233 0.14 +1.6
248,235 - CCNA_00233 0.15 -0.4
248,256 - CCNA_00233 0.17 +0.2
248,256 - CCNA_00233 0.17 +0.5
248,267 + CCNA_00233 0.18 +0.7
248,275 + CCNA_00233 0.19 +0.4
248,335 + CCNA_00233 0.24 +1.1
248,335 + CCNA_00233 0.24 +1.2
248,336 - CCNA_00233 0.24 +1.1
248,397 + CCNA_00233 0.30 +2.1
248,402 + CCNA_00233 0.31 +1.5
248,405 - CCNA_00233 0.31 +1.2
248,407 + CCNA_00233 0.31 +0.7
248,410 - -1.7
248,417 - CCNA_00233 0.32 +0.5
248,417 - CCNA_00233 0.32 -1.5
248,429 - CCNA_00233 0.33 +0.7
248,436 - CCNA_00233 0.34 +0.6
248,454 + CCNA_00233 0.36 +1.6
248,454 + CCNA_00233 0.36 +2.1
248,458 + CCNA_00233 0.36 +1.9
248,461 - CCNA_00233 0.37 -0.1
248,462 - CCNA_00233 0.37 -0.2
248,462 - CCNA_00233 0.37 +0.6
248,463 + CCNA_00233 0.37 +1.3
248,476 - CCNA_00233 0.38 +2.4
248,493 + CCNA_00233 0.40 +2.0
248,493 + CCNA_00233 0.40 +1.0
248,505 + CCNA_00233 0.41 +2.4
248,506 - CCNA_00233 0.41 +1.4
248,518 - CCNA_00233 0.42 +2.3
248,526 + CCNA_00233 0.43 +1.7
248,528 + CCNA_00233 0.43 +1.8
248,528 + CCNA_00233 0.43 +2.0
248,528 + CCNA_00233 0.43 +2.7
248,536 - CCNA_00233 0.44 +0.9
248,556 + CCNA_00233 0.46 +2.9
248,557 - CCNA_00233 0.46 +2.9
248,564 - CCNA_00233 0.46 +1.1
248,564 - CCNA_00233 0.46 -3.0
248,564 - CCNA_00233 0.46 +0.7
248,564 - CCNA_00233 0.46 +1.3
248,564 - CCNA_00233 0.46 -0.1
248,564 - CCNA_00233 0.46 +1.7
248,564 - CCNA_00233 0.46 +1.6
248,564 - CCNA_00233 0.46 +0.5
248,606 + CCNA_00233 0.50 +0.5
248,606 + CCNA_00233 0.50 +2.9
248,606 + CCNA_00233 0.50 +2.7
248,606 + CCNA_00233 0.50 +2.5
248,606 + CCNA_00233 0.50 +3.2
248,606 + CCNA_00233 0.50 +0.9
248,614 - CCNA_00233 0.51 +1.6
248,614 - CCNA_00233 0.51 -0.4
248,614 - CCNA_00233 0.51 -1.0
248,614 - CCNA_00233 0.51 +3.8
248,614 - CCNA_00233 0.51 +0.4
248,632 - CCNA_00233 0.53 -2.2
248,647 + CCNA_00233 0.54 +3.1
248,650 + CCNA_00233 0.55 +2.2
248,650 + CCNA_00233 0.55 +0.8
248,650 + CCNA_00233 0.55 +1.5
248,650 + CCNA_00233 0.55 +2.1
248,655 - CCNA_00233 0.55 -0.2
248,658 - CCNA_00233 0.55 +0.8
248,675 + CCNA_00233 0.57 +5.6
248,723 - CCNA_00233 0.62 +2.9
248,726 + CCNA_00233 0.62 +1.6
248,726 + CCNA_00233 0.62 +1.9
248,749 - CCNA_00233 0.64 +0.8
248,790 + CCNA_00233 0.68 +1.3
248,835 - CCNA_00233 0.73 +1.8
248,837 + CCNA_00233 0.73 +1.7
248,837 + CCNA_00233 0.73 +1.5
248,842 + CCNA_00233 0.73 +1.2
248,863 + CCNA_00233 0.75 +2.1
248,898 - CCNA_00233 0.79 +0.8
248,907 + CCNA_00233 0.79 +3.0
248,907 + CCNA_00233 0.79 +2.4
248,908 - CCNA_00233 0.80 -1.0
248,915 - CCNA_00233 0.80 +1.2
248,922 + CCNA_00233 0.81 +2.1
248,925 - CCNA_00233 0.81 -0.7
248,937 + -0.9
248,937 + CCNA_00233 0.82 +1.9

Or see this region's nucleotide sequence