Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2503

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2502 and DvMF_2503 are separated by 301 nucleotidesDvMF_2503 and DvMF_2504 are separated by 422 nucleotides DvMF_2502: DvMF_2502 - glutamate-1-semialdehyde aminotransferase (RefSeq), at 3,155,303 to 3,156,580 _2502 DvMF_2503: DvMF_2503 - putative transcriptional regulator, AsnC family (RefSeq), at 3,156,882 to 3,157,382 _2503 DvMF_2504: DvMF_2504 - no description, at 3,157,805 to 3,158,798 _2504 Position (kb) 3156 3157 3158Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3157.460 kb on - strandat 3157.476 kb on + strandat 3157.624 kb on - strandat 3157.651 kb on - strandat 3157.781 kb on + strandat 3157.781 kb on + strandat 3158.099 kb on + strand, within DvMF_2504at 3158.280 kb on - strand, within DvMF_2504at 3158.350 kb on + strand, within DvMF_2504at 3158.358 kb on - strand, within DvMF_2504at 3158.358 kb on - strand, within DvMF_2504

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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3,157,460 - -0.6
3,157,476 + -0.2
3,157,624 - -0.4
3,157,651 - -0.3
3,157,781 + -0.1
3,157,781 + -0.6
3,158,099 + DvMF_2504 0.30 -4.4
3,158,280 - DvMF_2504 0.48 -3.4
3,158,350 + DvMF_2504 0.55 -3.3
3,158,358 - DvMF_2504 0.56 -3.9
3,158,358 - DvMF_2504 0.56 -3.9

Or see this region's nucleotide sequence