Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1720

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1719 and DvMF_1720 are separated by 470 nucleotidesDvMF_1720 and DvMF_1721 are separated by 317 nucleotides DvMF_1719: DvMF_1719 - metal dependent phosphohydrolase (RefSeq), at 2,101,478 to 2,102,686 _1719 DvMF_1720: DvMF_1720 - diguanylate phosphodiesterase (RefSeq), at 2,103,157 to 2,104,395 _1720 DvMF_1721: DvMF_1721 - Phenylacetate--CoA ligase (RefSeq), at 2,104,713 to 2,106,008 _1721 Position (kb) 2103 2104 2105Strain fitness (log2 ratio) -1 0 1at 2102.204 kb on - strand, within DvMF_1719at 2102.283 kb on + strand, within DvMF_1719at 2102.333 kb on + strand, within DvMF_1719at 2102.341 kb on - strand, within DvMF_1719at 2102.490 kb on - strand, within DvMF_1719at 2102.603 kb on - strandat 2103.178 kb on - strandat 2103.271 kb on - strandat 2103.271 kb on - strandat 2103.457 kb on + strand, within DvMF_1720at 2103.465 kb on - strand, within DvMF_1720at 2103.467 kb on + strand, within DvMF_1720at 2103.586 kb on - strand, within DvMF_1720at 2103.845 kb on - strand, within DvMF_1720at 2103.918 kb on - strand, within DvMF_1720at 2103.940 kb on + strand, within DvMF_1720at 2104.260 kb on + strand, within DvMF_1720at 2104.339 kb on + strandat 2104.417 kb on + strandat 2104.996 kb on - strand, within DvMF_1721at 2105.206 kb on - strand, within DvMF_1721at 2105.236 kb on + strand, within DvMF_1721at 2105.241 kb on + strand, within DvMF_1721at 2105.244 kb on - strand, within DvMF_1721

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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2,102,204 - DvMF_1719 0.60 -0.6
2,102,283 + DvMF_1719 0.67 +0.2
2,102,333 + DvMF_1719 0.71 -1.1
2,102,341 - DvMF_1719 0.71 -0.5
2,102,490 - DvMF_1719 0.84 -0.5
2,102,603 - -0.6
2,103,178 - -0.9
2,103,271 - +0.2
2,103,271 - -0.1
2,103,457 + DvMF_1720 0.24 -0.3
2,103,465 - DvMF_1720 0.25 -0.8
2,103,467 + DvMF_1720 0.25 +0.2
2,103,586 - DvMF_1720 0.35 -0.3
2,103,845 - DvMF_1720 0.56 -0.7
2,103,918 - DvMF_1720 0.61 +0.3
2,103,940 + DvMF_1720 0.63 -0.5
2,104,260 + DvMF_1720 0.89 -0.1
2,104,339 + -0.5
2,104,417 + -0.3
2,104,996 - DvMF_1721 0.22 -0.0
2,105,206 - DvMF_1721 0.38 -0.5
2,105,236 + DvMF_1721 0.40 -0.5
2,105,241 + DvMF_1721 0.41 -0.1
2,105,244 - DvMF_1721 0.41 -0.0

Or see this region's nucleotide sequence