Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0251 and DvMF_0252 are separated by 121 nucleotides DvMF_0252 and DvMF_0253 overlap by 52 nucleotides DvMF_0253 and DvMF_0254 are separated by 11 nucleotides DvMF_0254 and DvMF_0255 overlap by 14 nucleotides DvMF_0255 and DvMF_0256 are separated by 93 nucleotides
DvMF_0251: DvMF_0251 - protein of unknown function DUF342 (RefSeq), at 287,292 to 288,437
_0251
DvMF_0252: DvMF_0252 - anti-sigma-factor antagonist (RefSeq), at 288,559 to 288,903
_0252
DvMF_0253: DvMF_0253 - putative signal transduction histidine kinase (RefSeq), at 288,852 to 289,313
_0253
DvMF_0254: DvMF_0254 - response regulator receiver modulated serine phosphatase (RefSeq), at 289,325 to 290,917
_0254
DvMF_0255: DvMF_0255 - D-tyrosyl-tRNA(Tyr) deacylase (RefSeq), at 290,904 to 291,458
_0255
DvMF_0256: DvMF_0256 - AMP-dependent synthetase and ligase (RefSeq), at 291,552 to 293,303
_0256
Position (kb) 289
290
291 Strain fitness (log2 ratio) -1
0
1 at 288.656 kb on - strand, within DvMF_0252 at 288.900 kb on + strand at 288.970 kb on + strand, within DvMF_0253 at 289.111 kb on - strand, within DvMF_0253 at 289.201 kb on - strand, within DvMF_0253 at 289.211 kb on + strand, within DvMF_0253 at 289.381 kb on + strand at 289.424 kb on + strand at 289.635 kb on - strand, within DvMF_0254 at 289.693 kb on - strand, within DvMF_0254 at 289.741 kb on + strand, within DvMF_0254 at 289.758 kb on + strand, within DvMF_0254 at 289.947 kb on - strand, within DvMF_0254 at 290.095 kb on - strand, within DvMF_0254 at 290.215 kb on - strand, within DvMF_0254 at 290.403 kb on - strand, within DvMF_0254 at 290.736 kb on + strand, within DvMF_0254 at 290.980 kb on - strand, within DvMF_0255 at 291.663 kb on - strand at 291.670 kb on + strand at 291.670 kb on + strand at 291.678 kb on - strand at 291.678 kb on - strand at 291.844 kb on + strand, within DvMF_0256 at 291.850 kb on + strand, within DvMF_0256 at 291.850 kb on + strand, within DvMF_0256
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 288,656 - DvMF_0252 0.28 -0.2 288,900 + -0.4 288,970 + DvMF_0253 0.26 -0.6 289,111 - DvMF_0253 0.56 -0.6 289,201 - DvMF_0253 0.76 -1.0 289,211 + DvMF_0253 0.78 -0.3 289,381 + -0.4 289,424 + -0.3 289,635 - DvMF_0254 0.19 +1.5 289,693 - DvMF_0254 0.23 -0.1 289,741 + DvMF_0254 0.26 -0.3 289,758 + DvMF_0254 0.27 +0.2 289,947 - DvMF_0254 0.39 -0.4 290,095 - DvMF_0254 0.48 -0.2 290,215 - DvMF_0254 0.56 -0.2 290,403 - DvMF_0254 0.68 +0.0 290,736 + DvMF_0254 0.89 -0.5 290,980 - DvMF_0255 0.14 -0.5 291,663 - -0.4 291,670 + -0.6 291,670 + -0.5 291,678 - -0.4 291,678 - -0.4 291,844 + DvMF_0256 0.17 +1.6 291,850 + DvMF_0256 0.17 -1.5 291,850 + DvMF_0256 0.17 -0.5
Or see this region's nucleotide sequence