Experiment: L-Leucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pepP and Synpcc7942_0076 are separated by 2 nucleotides Synpcc7942_0076 and Synpcc7942_0077 are separated by 75 nucleotides Synpcc7942_0077 and Synpcc7942_0078 overlap by 4 nucleotides
Synpcc7942_0075: pepP - aminopeptidase P. Metallo peptidase. MEROPS family M24B, at 73,775 to 75,088
pepP
Synpcc7942_0076: Synpcc7942_0076 - extracellular solute-binding protein, family 3, at 75,091 to 75,852
_0076
Synpcc7942_0077: Synpcc7942_0077 - transcriptional regulator, XRE family, at 75,928 to 76,617
_0077
Synpcc7942_0078: Synpcc7942_0078 - hypothetical protein, at 76,614 to 77,063
_0078
Position (kb) 75
76 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 74.196 kb on + strand, within pepP at 74.240 kb on - strand, within pepP at 74.284 kb on - strand, within pepP at 74.345 kb on + strand, within pepP at 74.516 kb on - strand, within pepP at 74.637 kb on + strand, within pepP at 74.724 kb on + strand, within pepP at 74.755 kb on + strand, within pepP at 74.756 kb on + strand, within pepP at 74.833 kb on + strand, within pepP at 74.859 kb on + strand, within pepP at 74.924 kb on + strand, within pepP at 74.926 kb on + strand, within pepP at 74.934 kb on - strand, within pepP at 74.958 kb on - strand at 75.082 kb on - strand at 75.131 kb on + strand at 75.131 kb on + strand at 75.141 kb on + strand at 75.149 kb on - strand at 75.236 kb on + strand, within Synpcc7942_0076 at 75.236 kb on + strand, within Synpcc7942_0076 at 75.244 kb on - strand, within Synpcc7942_0076 at 75.244 kb on - strand, within Synpcc7942_0076 at 75.244 kb on - strand, within Synpcc7942_0076 at 75.320 kb on + strand, within Synpcc7942_0076 at 75.328 kb on - strand, within Synpcc7942_0076 at 75.357 kb on + strand, within Synpcc7942_0076 at 75.357 kb on + strand, within Synpcc7942_0076 at 75.397 kb on - strand, within Synpcc7942_0076 at 75.397 kb on - strand, within Synpcc7942_0076 at 75.397 kb on - strand, within Synpcc7942_0076 at 75.436 kb on + strand, within Synpcc7942_0076 at 75.436 kb on + strand, within Synpcc7942_0076 at 75.444 kb on - strand, within Synpcc7942_0076 at 75.446 kb on + strand at 75.446 kb on + strand, within Synpcc7942_0076 at 75.454 kb on - strand, within Synpcc7942_0076 at 75.454 kb on - strand, within Synpcc7942_0076 at 75.479 kb on - strand, within Synpcc7942_0076 at 75.526 kb on + strand, within Synpcc7942_0076 at 75.526 kb on + strand, within Synpcc7942_0076 at 75.526 kb on + strand, within Synpcc7942_0076 at 75.534 kb on - strand at 75.534 kb on - strand, within Synpcc7942_0076 at 75.557 kb on - strand, within Synpcc7942_0076 at 75.693 kb on - strand, within Synpcc7942_0076 at 75.764 kb on - strand, within Synpcc7942_0076 at 75.791 kb on + strand at 75.799 kb on - strand at 75.799 kb on - strand at 75.996 kb on + strand at 75.999 kb on - strand, within Synpcc7942_0077 at 76.037 kb on - strand, within Synpcc7942_0077 at 76.037 kb on - strand, within Synpcc7942_0077 at 76.085 kb on + strand, within Synpcc7942_0077 at 76.093 kb on - strand, within Synpcc7942_0077 at 76.215 kb on - strand, within Synpcc7942_0077 at 76.243 kb on - strand, within Synpcc7942_0077 at 76.243 kb on - strand, within Synpcc7942_0077 at 76.243 kb on - strand, within Synpcc7942_0077 at 76.248 kb on - strand, within Synpcc7942_0077 at 76.252 kb on - strand, within Synpcc7942_0077 at 76.306 kb on + strand, within Synpcc7942_0077 at 76.315 kb on - strand, within Synpcc7942_0077 at 76.319 kb on - strand, within Synpcc7942_0077 at 76.333 kb on - strand, within Synpcc7942_0077 at 76.334 kb on + strand, within Synpcc7942_0077 at 76.334 kb on + strand, within Synpcc7942_0077 at 76.342 kb on - strand, within Synpcc7942_0077 at 76.404 kb on + strand, within Synpcc7942_0077 at 76.419 kb on + strand, within Synpcc7942_0077 at 76.420 kb on + strand, within Synpcc7942_0077 at 76.422 kb on - strand, within Synpcc7942_0077 at 76.497 kb on - strand, within Synpcc7942_0077 at 76.497 kb on - strand, within Synpcc7942_0077 at 76.532 kb on - strand, within Synpcc7942_0077 at 76.532 kb on - strand, within Synpcc7942_0077 at 76.566 kb on + strand at 76.574 kb on - strand at 76.619 kb on - strand at 76.626 kb on + strand at 76.640 kb on - strand at 76.674 kb on + strand, within Synpcc7942_0078 at 76.677 kb on + strand, within Synpcc7942_0078 at 76.743 kb on + strand, within Synpcc7942_0078 at 76.743 kb on + strand, within Synpcc7942_0078 at 76.743 kb on + strand, within Synpcc7942_0078 at 76.743 kb on + strand, within Synpcc7942_0078 at 76.743 kb on + strand, within Synpcc7942_0078 at 76.743 kb on + strand, within Synpcc7942_0078 at 76.743 kb on + strand at 76.743 kb on + strand, within Synpcc7942_0078 at 76.743 kb on + strand, within Synpcc7942_0078 at 76.751 kb on - strand, within Synpcc7942_0078 at 76.751 kb on - strand, within Synpcc7942_0078 at 76.751 kb on - strand, within Synpcc7942_0078 at 76.751 kb on - strand, within Synpcc7942_0078 at 76.751 kb on - strand, within Synpcc7942_0078 at 76.751 kb on - strand, within Synpcc7942_0078 at 76.751 kb on - strand, within Synpcc7942_0078 at 76.751 kb on - strand, within Synpcc7942_0078 at 76.756 kb on - strand, within Synpcc7942_0078 at 76.770 kb on + strand, within Synpcc7942_0078 at 76.775 kb on + strand, within Synpcc7942_0078 at 76.775 kb on + strand, within Synpcc7942_0078 at 76.775 kb on + strand, within Synpcc7942_0078 at 76.783 kb on - strand, within Synpcc7942_0078 at 76.796 kb on + strand, within Synpcc7942_0078 at 76.796 kb on + strand, within Synpcc7942_0078 at 76.797 kb on + strand, within Synpcc7942_0078
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (N) remove 74,196 + pepP Synpcc7942_0075 0.32 -1.8 74,240 - pepP Synpcc7942_0075 0.35 -2.2 74,284 - pepP Synpcc7942_0075 0.39 -2.5 74,345 + pepP Synpcc7942_0075 0.43 -2.6 74,516 - pepP Synpcc7942_0075 0.56 +2.8 74,637 + pepP Synpcc7942_0075 0.66 -3.4 74,724 + pepP Synpcc7942_0075 0.72 -3.0 74,755 + pepP Synpcc7942_0075 0.75 -1.1 74,756 + pepP Synpcc7942_0075 0.75 -2.8 74,833 + pepP Synpcc7942_0075 0.81 -2.3 74,859 + pepP Synpcc7942_0075 0.82 -1.5 74,924 + pepP Synpcc7942_0075 0.87 -1.7 74,926 + pepP Synpcc7942_0075 0.88 -2.1 74,934 - pepP Synpcc7942_0075 0.88 -2.2 74,958 - -4.2 75,082 - -1.5 75,131 + +0.1 75,131 + +0.5 75,141 + +0.5 75,149 - -0.7 75,236 + Synpcc7942_0076 0.19 -0.1 75,236 + Synpcc7942_0076 0.19 +1.0 75,244 - Synpcc7942_0076 0.20 +0.6 75,244 - Synpcc7942_0076 0.20 +1.6 75,244 - Synpcc7942_0076 0.20 +0.9 75,320 + Synpcc7942_0076 0.30 +0.4 75,328 - Synpcc7942_0076 0.31 +0.5 75,357 + Synpcc7942_0076 0.35 +1.1 75,357 + Synpcc7942_0076 0.35 +1.1 75,397 - Synpcc7942_0076 0.40 -0.0 75,397 - Synpcc7942_0076 0.40 -0.2 75,397 - Synpcc7942_0076 0.40 -1.0 75,436 + Synpcc7942_0076 0.45 +1.0 75,436 + Synpcc7942_0076 0.45 +1.2 75,444 - Synpcc7942_0076 0.46 -0.4 75,446 + +2.8 75,446 + Synpcc7942_0076 0.47 +1.8 75,454 - Synpcc7942_0076 0.48 +1.2 75,454 - Synpcc7942_0076 0.48 +1.9 75,479 - Synpcc7942_0076 0.51 +0.5 75,526 + Synpcc7942_0076 0.57 +1.5 75,526 + Synpcc7942_0076 0.57 +0.7 75,526 + Synpcc7942_0076 0.57 +0.2 75,534 - +0.9 75,534 - Synpcc7942_0076 0.58 +0.8 75,557 - Synpcc7942_0076 0.61 +0.7 75,693 - Synpcc7942_0076 0.79 +1.3 75,764 - Synpcc7942_0076 0.88 +0.5 75,791 + +0.5 75,799 - -0.2 75,799 - +0.4 75,996 + +0.4 75,999 - Synpcc7942_0077 0.10 -1.4 76,037 - Synpcc7942_0077 0.16 +0.3 76,037 - Synpcc7942_0077 0.16 -0.3 76,085 + Synpcc7942_0077 0.23 +0.6 76,093 - Synpcc7942_0077 0.24 -0.8 76,215 - Synpcc7942_0077 0.42 -0.3 76,243 - Synpcc7942_0077 0.46 +0.8 76,243 - Synpcc7942_0077 0.46 -1.3 76,243 - Synpcc7942_0077 0.46 -0.7 76,248 - Synpcc7942_0077 0.46 -0.3 76,252 - Synpcc7942_0077 0.47 +0.8 76,306 + Synpcc7942_0077 0.55 +0.5 76,315 - Synpcc7942_0077 0.56 -1.7 76,319 - Synpcc7942_0077 0.57 -0.5 76,333 - Synpcc7942_0077 0.59 -0.8 76,334 + Synpcc7942_0077 0.59 -0.2 76,334 + Synpcc7942_0077 0.59 -1.7 76,342 - Synpcc7942_0077 0.60 -2.1 76,404 + Synpcc7942_0077 0.69 -0.1 76,419 + Synpcc7942_0077 0.71 -0.5 76,420 + Synpcc7942_0077 0.71 -2.1 76,422 - Synpcc7942_0077 0.72 -1.3 76,497 - Synpcc7942_0077 0.82 +0.7 76,497 - Synpcc7942_0077 0.82 -0.6 76,532 - Synpcc7942_0077 0.88 -0.5 76,532 - Synpcc7942_0077 0.88 -1.4 76,566 + -0.6 76,574 - +0.9 76,619 - -0.2 76,626 + -0.3 76,640 - +1.2 76,674 + Synpcc7942_0078 0.13 -0.4 76,677 + Synpcc7942_0078 0.14 +0.4 76,743 + Synpcc7942_0078 0.29 -0.3 76,743 + Synpcc7942_0078 0.29 +0.6 76,743 + Synpcc7942_0078 0.29 +0.7 76,743 + Synpcc7942_0078 0.29 +0.3 76,743 + Synpcc7942_0078 0.29 +1.1 76,743 + Synpcc7942_0078 0.29 -0.1 76,743 + +0.2 76,743 + Synpcc7942_0078 0.29 -1.1 76,743 + Synpcc7942_0078 0.29 -0.3 76,751 - Synpcc7942_0078 0.30 +0.4 76,751 - Synpcc7942_0078 0.30 +0.5 76,751 - Synpcc7942_0078 0.30 +0.3 76,751 - Synpcc7942_0078 0.30 -2.1 76,751 - Synpcc7942_0078 0.30 -0.5 76,751 - Synpcc7942_0078 0.30 -0.2 76,751 - Synpcc7942_0078 0.30 +0.4 76,751 - Synpcc7942_0078 0.30 -1.5 76,756 - Synpcc7942_0078 0.32 +0.6 76,770 + Synpcc7942_0078 0.35 -0.5 76,775 + Synpcc7942_0078 0.36 +0.8 76,775 + Synpcc7942_0078 0.36 +0.8 76,775 + Synpcc7942_0078 0.36 -1.3 76,783 - Synpcc7942_0078 0.38 +0.6 76,796 + Synpcc7942_0078 0.40 +0.0 76,796 + Synpcc7942_0078 0.40 -0.4 76,797 + Synpcc7942_0078 0.41 +1.1
Or see this region's nucleotide sequence