Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4848

Experiment: apoplastic; Pepper

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Pepper
5,753,745	+				+1.6
5,753,775	+				-0.1
5,753,775	+				+0.6
5,753,775	+				+1.3
5,753,775	+				+0.5
5,753,776	-				+0.1
5,753,776	-				-0.5
5,753,776	-				-0.4
5,753,776	-				+0.7
5,753,776	-				+1.4
5,753,776	-				-0.3
5,753,830	+				-1.4
5,753,830	+				-0.9
5,753,856	-				-1.8
5,753,856	-				+0.4
5,753,889	+				+2.4
5,753,891	+				+1.2
5,753,891	+				-0.3
5,753,891	+				-1.0
5,753,922	+				+2.5
5,753,922	+				+0.3
5,753,922	+				+0.6
5,753,922	+				-0.1
5,753,922	+				-0.4
5,753,922	+				+0.4
5,753,922	+				+0.2
5,753,922	+				-0.3
5,753,926	+				+0.8
5,753,926	+				+0.1
5,753,926	+				+1.3
5,753,926	+				+2.4
5,753,926	+				-0.4
5,753,926	+				+0.6
5,753,926	+				-0.3
5,753,926	+				+0.5
5,753,926	+				-0.5
5,753,926	+				-0.9
5,753,926	+				+0.5
5,753,926	+				-2.3
5,753,926	+				+1.1
5,754,686	+				+1.8
5,754,686	+				-1.5
5,754,687	-				-0.4
5,754,713	+				+0.3
5,754,713	+				-0.0
5,754,713	+				-1.8
5,754,713	+				-1.6
5,754,713	+				-0.2
5,754,714	-				+1.3
5,754,714	-				-0.7
5,754,714	-				+0.6
5,754,714	-				+0.3
5,754,714	-				-0.1
5,755,058	+		Psyr_4848	0.41	-0.2
5,755,058	+		Psyr_4848	0.41	+2.6
5,755,059	-		Psyr_4848	0.41	-2.7
5,755,059	-		Psyr_4848	0.41	-1.1
5,755,199	+		Psyr_4848	0.56	-1.5
5,755,199	+		Psyr_4848	0.56	+0.5
5,755,199	+		Psyr_4848	0.56	-1.3
5,755,199	+		Psyr_4848	0.56	+1.1
5,755,199	+		Psyr_4848	0.56	-0.2
5,755,199	+		Psyr_4848	0.56	-0.0
5,755,199	+		Psyr_4848	0.56	+0.0
5,755,199	+		Psyr_4848	0.56	-2.2
5,755,199	+		Psyr_4848	0.56	-1.3
5,755,199	+		Psyr_4848	0.56	+0.5
5,755,199	+		Psyr_4848	0.56	+0.7
5,755,199	+		Psyr_4848	0.56	+1.1
5,755,199	+		Psyr_4848	0.56	-0.1
5,755,199	+		Psyr_4848	0.56	-0.6
5,755,199	+		Psyr_4848	0.56	-0.3
5,755,199	+		Psyr_4848	0.56	+0.8
5,755,199	+		Psyr_4848	0.56	-0.3
5,755,199	+		Psyr_4848	0.56	-2.7
5,755,199	+		Psyr_4848	0.56	-1.8
5,755,200	-		Psyr_4848	0.56	-1.2
5,755,200	-		Psyr_4848	0.56	-1.7
5,755,200	-		Psyr_4848	0.56	+0.5
5,755,200	-		Psyr_4848	0.56	+0.6
5,755,200	-		Psyr_4848	0.56	-0.1
5,755,200	-		Psyr_4848	0.56	-1.6
5,755,200	-		Psyr_4848	0.56	-0.4
5,755,200	-		Psyr_4848	0.56	-0.4
5,755,200	-		Psyr_4848	0.56	-1.0
5,755,200	-		Psyr_4848	0.56	+0.5
5,755,200	-		Psyr_4848	0.56	-0.9
5,755,200	-		Psyr_4848	0.56	+0.2
5,755,200	-		Psyr_4848	0.56	-0.3
5,755,217	+		Psyr_4848	0.58	-0.3
5,755,217	+		Psyr_4848	0.58	+0.3
5,755,218	-		Psyr_4848	0.58	-1.9
5,755,218	-		Psyr_4848	0.58	+0.2
5,755,218	-		Psyr_4848	0.58	-0.8
5,755,218	-		Psyr_4848	0.58	+1.3
5,755,218	-		Psyr_4848	0.58	+3.4
5,755,321	-		Psyr_4848	0.69	+1.5
5,755,484	+		Psyr_4848	0.86	-0.4
5,755,513	+		Psyr_4848	0.89	+0.1
5,755,513	+		Psyr_4848	0.89	+0.9
5,755,513	+		Psyr_4848	0.89	-0.3
5,755,514	-		Psyr_4848	0.89	-0.2
5,755,515	+		Psyr_4848	0.89	-2.4
5,755,516	-		Psyr_4848	0.89	-1.7
5,755,516	-		Psyr_4848	0.89	-1.8
5,755,516	-		Psyr_4848	0.89	+0.4
5,755,516	-		Psyr_4848	0.89	+0.2
5,755,528	+				+2.7
5,755,528	+				+0.3
5,755,528	+				+1.3
5,755,528	+				-0.3
5,755,529	-				-0.9
5,755,529	-				-2.6
5,755,529	-				-0.0
5,755,549	+				-3.9
5,755,550	-				+0.3
5,755,560	+				+0.7
5,755,560	+				-0.1
5,755,560	+				+0.5
5,755,573	+				-0.2
5,755,574	-				-0.2
5,755,574	-				+2.0
5,755,636	-				+0.5
5,755,649	+				-1.5
5,755,649	+				+0.9
5,755,649	+				+0.1
5,755,649	+				-1.6
5,755,649	+				+1.3
5,755,649	+				+2.0
5,755,650	-				-1.4
5,755,650	-				-0.9
5,755,650	-				-1.5
5,755,650	-				+2.6
5,755,650	-				+1.9
5,755,651	+				-0.4
5,755,651	+				-0.8
5,755,651	+				-2.8
5,755,651	+				+1.0
5,755,651	+				+0.7
5,755,651	+				-2.5
5,755,652	-				-1.7
5,755,652	-				+0.1
5,755,652	-				+0.3
5,755,652	-				+1.0
5,755,668	+				+0.4
5,755,669	-				+0.4
5,755,683	+				-0.8
5,755,683	+				+0.7
5,755,684	-				-0.3
5,755,684	-				+0.6
5,755,730	+				-0.3
5,755,730	+				+0.8
5,755,731	-				+0.9
5,755,731	-				+0.9
5,755,731	-				+0.3
5,755,731	-				+2.3
5,755,731	-				+0.2
5,755,757	+				-2.5
5,755,757	+				+3.3
5,755,757	+				-1.3
5,755,757	+				-0.7
5,755,757	+				-0.7
5,755,757	+				+0.4
5,755,757	+				+0.3
5,755,757	+				-1.7
5,755,757	+				+0.5
5,755,758	-				+0.0
5,755,758	-				+0.3
5,755,758	-				+1.5
5,755,758	-				+0.6
5,755,758	-				-0.6
5,755,758	-				-1.3
5,755,758	-				+1.3
5,755,758	-				+0.6
5,755,758	-				-1.1
5,755,806	+		Psyr_4849	0.11	+1.1
5,755,807	-		Psyr_4849	0.11	+0.0
5,756,027	+		Psyr_4849	0.35	+0.4
5,756,027	+		Psyr_4849	0.35	+1.6
5,756,027	+		Psyr_4849	0.35	-0.1
5,756,028	-		Psyr_4849	0.35	-0.3
5,756,028	-		Psyr_4849	0.35	+0.0
5,756,028	-		Psyr_4849	0.35	-0.2
5,756,056	+		Psyr_4849	0.38	+0.2
5,756,132	+		Psyr_4849	0.46	+0.4
5,756,133	-		Psyr_4849	0.46	-1.4
5,756,182	-		Psyr_4849	0.51	+1.2
5,756,290	+		Psyr_4849	0.63	-0.4
5,756,290	+		Psyr_4849	0.63	-0.7
5,756,290	+		Psyr_4849	0.63	-0.3
5,756,290	+		Psyr_4849	0.63	+0.3
5,756,290	+		Psyr_4849	0.63	+0.8
5,756,290	+		Psyr_4849	0.63	-0.3
5,756,291	-		Psyr_4849	0.63	-1.1
5,756,291	-		Psyr_4849	0.63	-0.5
5,756,291	-		Psyr_4849	0.63	-1.7
5,756,291	-		Psyr_4849	0.63	+1.3
5,756,291	-		Psyr_4849	0.63	+0.2
5,756,291	-		Psyr_4849	0.63	-0.3
5,756,291	-		Psyr_4849	0.63	-0.7
5,756,368	-		Psyr_4849	0.71	+0.7
5,756,369	+		Psyr_4849	0.71	-1.5
5,756,369	+		Psyr_4849	0.71	+0.6
5,756,369	+		Psyr_4849	0.71	-0.1
5,756,369	+		Psyr_4849	0.71	+1.0
5,756,370	-		Psyr_4849	0.71	+0.8
5,756,370	-		Psyr_4849	0.71	-0.1
5,756,370	-		Psyr_4849	0.71	+1.7
5,756,370	-		Psyr_4849	0.71	+0.6
5,756,561	-				-1.3
5,756,574	-				-0.1
5,756,595	-				+1.2