Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4613

Experiment: apoplastic; Pepper

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Pepper
5,469,574	+				+0.6
5,469,575	-				+0.5
5,469,575	-				+0.6
5,469,705	+				-2.5
5,469,705	+				+1.1
5,469,705	+				-1.4
5,469,705	+				-2.7
5,469,705	+				-1.8
5,469,706	-				+1.3
5,469,706	-				-1.9
5,469,706	-				+0.4
5,469,706	-				-2.7
5,470,128	+		Psyr_4612	0.49	+1.0
5,470,128	+		Psyr_4612	0.49	-0.3
5,470,128	+		Psyr_4612	0.49	+0.4
5,470,128	+		Psyr_4612	0.49	+0.4
5,470,128	+		Psyr_4612	0.49	+1.4
5,470,128	+		Psyr_4612	0.49	+3.2
5,470,128	+		Psyr_4612	0.49	+0.6
5,470,128	+		Psyr_4612	0.49	+0.2
5,470,129	-		Psyr_4612	0.50	+0.6
5,470,129	-		Psyr_4612	0.50	+0.5
5,470,129	-		Psyr_4612	0.50	-1.1
5,470,129	-		Psyr_4612	0.50	+1.8
5,470,129	-		Psyr_4612	0.50	-0.5
5,470,129	-		Psyr_4612	0.50	+1.0
5,470,129	-		Psyr_4612	0.50	+0.5
5,470,129	-		Psyr_4612	0.50	+0.1
5,470,129	-		Psyr_4612	0.50	-1.0
5,470,129	-		Psyr_4612	0.50	-0.3
5,470,129	-		Psyr_4612	0.50	+2.5
5,470,129	-		Psyr_4612	0.50	+0.3
5,470,132	+		Psyr_4612	0.50	-1.6
5,470,132	+		Psyr_4612	0.50	-0.9
5,470,165	-		Psyr_4612	0.54	+0.3
5,470,165	-		Psyr_4612	0.54	+0.1
5,470,500	+				-0.0
5,470,500	+				+0.0
5,470,500	+				-1.9
5,470,500	+				-2.4
5,470,500	+				-0.4
5,470,500	+				+0.8
5,470,501	-				+1.6
5,470,501	-				-0.9
5,470,501	-				+0.3
5,470,501	-				-0.1
5,470,501	-				+0.7
5,470,501	-				-1.4
5,470,504	-				+0.1
5,470,504	-				-1.5
5,470,504	-				+0.7
5,470,531	-				-1.6
5,470,556	+				+0.1
5,470,557	-				+0.5
5,470,593	+				-0.5
5,470,593	+				-1.0
5,470,593	+				-0.8
5,470,593	+				+1.2
5,470,593	+				+1.2
5,470,593	+				+0.8
5,470,595	+				+0.2
5,470,595	+				-1.3
5,470,595	+				+0.2
5,470,596	-				-0.9
5,470,596	-				-0.2
5,470,596	-				+1.5
5,470,596	-				+0.3
5,470,596	-				+0.1
5,470,604	+				+1.2
5,470,680	-		Psyr_4613	0.10	-1.6
5,470,680	-		Psyr_4613	0.10	+0.1
5,470,695	-		Psyr_4613	0.11	-2.5
5,470,695	-		Psyr_4613	0.11	+0.5
5,470,742	+		Psyr_4613	0.15	+0.1
5,470,742	+		Psyr_4613	0.15	+0.3
5,470,742	+		Psyr_4613	0.15	-0.4
5,470,742	+		Psyr_4613	0.15	+1.1
5,470,742	+		Psyr_4613	0.15	-1.5
5,470,742	+		Psyr_4613	0.15	+0.7
5,470,743	-		Psyr_4613	0.15	+0.1
5,470,743	-		Psyr_4613	0.15	+0.9
5,470,743	-		Psyr_4613	0.15	+1.3
5,470,743	-		Psyr_4613	0.15	+0.3
5,470,743	-		Psyr_4613	0.15	-1.2
5,470,743	-		Psyr_4613	0.15	+0.2
5,470,743	-		Psyr_4613	0.15	+1.4
5,470,743	-		Psyr_4613	0.15	+1.1
5,470,743	-		Psyr_4613	0.15	-0.7
5,470,743	-		Psyr_4613	0.15	+0.3
5,470,743	-		Psyr_4613	0.15	-0.4
5,470,812	-		Psyr_4613	0.21	+0.9
5,470,868	+		Psyr_4613	0.25	+0.5
5,470,868	+		Psyr_4613	0.25	+0.5
5,470,868	+		Psyr_4613	0.25	+0.3
5,470,868	+		Psyr_4613	0.25	+0.4
5,470,868	+		Psyr_4613	0.25	-0.1
5,470,869	-		Psyr_4613	0.25	-0.4
5,470,869	-		Psyr_4613	0.25	+0.7
5,470,869	-		Psyr_4613	0.25	-0.0
5,470,899	-		Psyr_4613	0.28	+1.8
5,470,899	-		Psyr_4613	0.28	+0.2
5,470,899	-		Psyr_4613	0.28	-0.6
5,470,946	+		Psyr_4613	0.31	-0.4
5,470,946	+		Psyr_4613	0.31	-2.4
5,470,946	+		Psyr_4613	0.31	+0.7
5,470,946	+		Psyr_4613	0.31	+0.2
5,470,946	+		Psyr_4613	0.31	+0.7
5,470,946	+		Psyr_4613	0.31	-0.2
5,470,946	+		Psyr_4613	0.31	-0.4
5,470,946	+		Psyr_4613	0.31	+0.4
5,470,946	+		Psyr_4613	0.31	+1.6
5,470,946	+		Psyr_4613	0.31	+0.2
5,470,947	-		Psyr_4613	0.31	+1.3
5,470,947	-		Psyr_4613	0.31	-0.8
5,470,947	-		Psyr_4613	0.31	+1.7
5,470,947	-		Psyr_4613	0.31	+1.9
5,470,947	-		Psyr_4613	0.31	+0.2
5,470,947	-		Psyr_4613	0.31	+0.7
5,470,947	-		Psyr_4613	0.31	+2.2
5,470,947	-		Psyr_4613	0.31	-0.9
5,470,947	-		Psyr_4613	0.31	-0.7
5,470,947	-		Psyr_4613	0.31	+0.2
5,471,144	+		Psyr_4613	0.47	-2.4
5,471,144	+		Psyr_4613	0.47	+0.4
5,471,144	+		Psyr_4613	0.47	+2.2
5,471,145	-		Psyr_4613	0.47	-2.6
5,471,226	-		Psyr_4613	0.54	-1.2
5,471,226	-		Psyr_4613	0.54	-1.4
5,471,300	+		Psyr_4613	0.60	-0.6
5,471,300	+		Psyr_4613	0.60	-0.2
5,471,300	+		Psyr_4613	0.60	+0.1
5,471,300	+		Psyr_4613	0.60	-0.9
5,471,300	+		Psyr_4613	0.60	+0.3
5,471,301	-		Psyr_4613	0.60	-0.6
5,471,301	-		Psyr_4613	0.60	+0.8
5,471,304	-		Psyr_4613	0.60	+1.6
5,471,322	+		Psyr_4613	0.61	+1.3
5,471,323	-		Psyr_4613	0.62	-2.0
5,471,391	+		Psyr_4613	0.67	+0.8
5,471,391	+		Psyr_4613	0.67	+1.5
5,471,391	+		Psyr_4613	0.67	+0.1
5,471,391	+		Psyr_4613	0.67	-0.7
5,471,392	-		Psyr_4613	0.67	+1.1
5,471,392	-		Psyr_4613	0.67	-1.1
5,471,392	-		Psyr_4613	0.67	+0.6
5,471,392	-		Psyr_4613	0.67	-0.9
5,471,392	-		Psyr_4613	0.67	+1.4
5,471,393	+		Psyr_4613	0.67	-1.1
5,471,393	+		Psyr_4613	0.67	-0.2
5,471,393	+		Psyr_4613	0.67	+0.3
5,471,393	+		Psyr_4613	0.67	-2.4
5,471,394	-		Psyr_4613	0.67	+0.0
5,471,394	-		Psyr_4613	0.67	+0.0
5,471,394	-		Psyr_4613	0.67	+1.0
5,471,394	-		Psyr_4613	0.67	-1.1
5,471,394	-		Psyr_4613	0.67	-0.9
5,471,569	-		Psyr_4613	0.81	+1.5
5,471,569	-		Psyr_4613	0.81	-0.4
5,471,642	+		Psyr_4613	0.87	-0.6
5,471,642	+		Psyr_4613	0.87	-0.2
5,471,642	+		Psyr_4613	0.87	+1.5
5,471,642	+		Psyr_4613	0.87	-1.9
5,471,642	+		Psyr_4613	0.87	+1.0
5,471,643	-		Psyr_4613	0.87	+0.6
5,471,881	+				-0.8
5,471,881	+				-0.6
5,471,882	-				-0.8
5,471,882	-				+1.1
5,471,882	-				+0.1
5,472,064	+		Psyr_4614	0.18	+0.1
5,472,065	-		Psyr_4614	0.18	+0.0
5,472,094	+		Psyr_4614	0.21	+1.2
5,472,095	-		Psyr_4614	0.21	+1.1
5,472,095	-		Psyr_4614	0.21	+0.8
5,472,095	-		Psyr_4614	0.21	+1.2
5,472,095	-		Psyr_4614	0.21	-0.6
5,472,095	-		Psyr_4614	0.21	+0.4
5,472,163	+		Psyr_4614	0.27	+1.6
5,472,164	-		Psyr_4614	0.27	+0.5
5,472,164	-		Psyr_4614	0.27	+0.1
5,472,164	-		Psyr_4614	0.27	-0.1
5,472,229	+		Psyr_4614	0.34	-1.1
5,472,229	+		Psyr_4614	0.34	+0.5
5,472,230	-		Psyr_4614	0.34	+0.5
5,472,230	-		Psyr_4614	0.34	-0.1
5,472,230	-		Psyr_4614	0.34	+0.3
5,472,266	-		Psyr_4614	0.37	+0.0
5,472,363	+		Psyr_4614	0.47	+0.6
5,472,364	-		Psyr_4614	0.47	-0.2
5,472,370	+		Psyr_4614	0.47	+0.0
5,472,370	+		Psyr_4614	0.47	+2.7
5,472,370	+		Psyr_4614	0.47	-0.5
5,472,370	+		Psyr_4614	0.47	+0.4
5,472,370	+		Psyr_4614	0.47	+0.4
5,472,371	-		Psyr_4614	0.47	+0.1
5,472,371	-		Psyr_4614	0.47	-0.1
5,472,371	-		Psyr_4614	0.47	+2.5
5,472,371	-		Psyr_4614	0.47	-1.0
5,472,421	+		Psyr_4614	0.52	-1.2
5,472,421	+		Psyr_4614	0.52	-0.2
5,472,421	+		Psyr_4614	0.52	-2.1
5,472,421	+		Psyr_4614	0.52	+0.2
5,472,421	+		Psyr_4614	0.52	+0.4
5,472,422	-		Psyr_4614	0.52	+0.4
5,472,422	-				+0.2
5,472,520	+		Psyr_4614	0.62	-0.0
5,472,672	+		Psyr_4614	0.77	+0.5
5,472,673	-		Psyr_4614	0.77	+0.2
5,472,673	-		Psyr_4614	0.77	-0.1
5,472,736	+		Psyr_4614	0.83	-0.6
5,472,736	+		Psyr_4614	0.83	+1.6
5,472,736	+		Psyr_4614	0.83	-1.2
5,472,737	-		Psyr_4614	0.83	-1.2
5,472,784	+		Psyr_4614	0.87	+1.1
5,472,785	-		Psyr_4614	0.87	+1.2
5,472,785	-		Psyr_4614	0.87	+0.6