Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3823

Experiment: apoplastic; Pepper

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Pepper
4,546,843	+		Psyr_3822	0.23	+0.0
4,546,844	-		Psyr_3822	0.24	-2.1
4,546,854	+		Psyr_3822	0.25	+1.8
4,546,854	+		Psyr_3822	0.25	+0.6
4,546,854	+		Psyr_3822	0.25	+1.9
4,546,854	+		Psyr_3822	0.25	+0.7
4,546,854	+		Psyr_3822	0.25	-1.4
4,546,854	+		Psyr_3822	0.25	-1.2
4,546,854	+		Psyr_3822	0.25	+0.4
4,546,854	+		Psyr_3822	0.25	+0.4
4,546,854	+		Psyr_3822	0.25	+0.5
4,546,854	+		Psyr_3822	0.25	-2.7
4,546,854	+		Psyr_3822	0.25	+0.1
4,546,854	+		Psyr_3822	0.25	-0.8
4,546,854	+		Psyr_3822	0.25	-0.4
4,546,855	-		Psyr_3822	0.25	-1.4
4,546,855	-		Psyr_3822	0.25	+2.5
4,546,889	+		Psyr_3822	0.29	+0.8
4,546,890	-		Psyr_3822	0.29	+0.8
4,546,890	-		Psyr_3822	0.29	+0.1
4,546,983	+		Psyr_3822	0.39	+1.3
4,546,983	+		Psyr_3822	0.39	-2.7
4,546,983	+		Psyr_3822	0.39	+0.2
4,546,983	+		Psyr_3822	0.39	+1.2
4,546,984	-		Psyr_3822	0.39	+0.9
4,546,984	-		Psyr_3822	0.39	-0.2
4,546,984	-		Psyr_3822	0.39	+1.4
4,546,984	-		Psyr_3822	0.39	+0.6
4,546,990	-		Psyr_3822	0.40	+0.1
4,547,004	+		Psyr_3822	0.42	-1.6
4,547,046	+		Psyr_3822	0.47	-0.0
4,547,046	+		Psyr_3822	0.47	+0.3
4,547,046	+		Psyr_3822	0.47	+1.2
4,547,047	-		Psyr_3822	0.47	-0.8
4,547,047	-		Psyr_3822	0.47	-0.2
4,547,067	+		Psyr_3822	0.49	+1.0
4,547,067	+		Psyr_3822	0.49	-0.1
4,547,068	-		Psyr_3822	0.49	-0.1
4,547,068	-		Psyr_3822	0.49	-0.3
4,547,301	+		Psyr_3822	0.76	-0.7
4,547,301	+		Psyr_3822	0.76	+0.6
4,547,301	+		Psyr_3822	0.76	-0.8
4,547,301	+		Psyr_3822	0.76	-0.1
4,547,301	+		Psyr_3822	0.76	+0.6
4,547,301	+		Psyr_3822	0.76	+0.3
4,547,301	+		Psyr_3822	0.76	-1.0
4,547,301	+		Psyr_3822	0.76	+0.4
4,547,301	+		Psyr_3822	0.76	+0.9
4,547,301	+		Psyr_3822	0.76	-3.0
4,547,301	+		Psyr_3822	0.76	+1.0
4,547,301	+		Psyr_3822	0.76	+0.8
4,547,301	+		Psyr_3822	0.76	+1.2
4,547,301	+		Psyr_3822	0.76	-0.0
4,547,302	-		Psyr_3822	0.76	+0.9
4,547,302	-		Psyr_3822	0.76	-0.8
4,547,302	-		Psyr_3822	0.76	-0.7
4,547,302	-		Psyr_3822	0.76	+1.4
4,547,302	-		Psyr_3822	0.76	-1.5
4,547,302	-		Psyr_3822	0.76	+0.3
4,547,302	-		Psyr_3822	0.76	+0.5
4,547,302	-		Psyr_3822	0.76	-0.1
4,547,302	-		Psyr_3822	0.76	-0.8
4,547,302	-		Psyr_3822	0.76	-1.3
4,547,302	-		Psyr_3822	0.76	+0.8
4,547,302	-		Psyr_3822	0.76	+0.2
4,547,302	-		Psyr_3822	0.76	+0.5
4,547,302	-		Psyr_3822	0.76	-0.3
4,547,302	-		Psyr_3822	0.76	-2.1
4,547,302	-		Psyr_3822	0.76	+1.2
4,547,302	-		Psyr_3822	0.76	+0.0
4,547,430	+				+0.3
4,547,430	+				+0.9
4,547,430	+				-1.2
4,547,430	+				-0.4
4,547,430	+				-0.3
4,547,431	-				+0.6
4,547,431	-				-0.4
4,547,431	-				-0.6
4,547,431	-				+2.1
4,547,454	+				-0.8
4,547,454	+				+1.3
4,547,455	-				-0.8
4,547,455	-				+0.3
4,547,504	+				+2.2
4,547,508	+				-2.3
4,547,547	+				-0.4
4,547,656	-				+1.0
4,547,687	+				-0.0
4,547,687	+				+0.7
4,547,738	+				-2.8
4,547,912	+				+0.2
4,547,912	+				+0.8
4,547,912	+				+1.1
4,547,912	+				+0.5
4,547,912	+				+0.2
4,547,913	-				-0.7
4,547,913	-				-0.1
4,547,913	-				+0.6
4,547,913	-				-0.2
4,547,913	-				+0.2
4,547,970	+				-1.0
4,547,970	+				+0.4
4,547,970	+				+1.1
4,547,970	+				-0.7
4,547,970	+				-0.4
4,547,970	+				+2.3
4,547,971	-				-0.1
4,547,971	-				+1.0
4,547,971	-				+0.2
4,547,971	-				-0.4
4,548,059	+				+1.0
4,548,155	+				-0.1
4,548,228	-				-0.3
4,548,354	-		Psyr_3823	0.12	+1.4
4,548,354	-		Psyr_3823	0.12	+2.3
4,548,515	+		Psyr_3823	0.15	-0.1
4,548,516	-		Psyr_3823	0.15	-0.4
4,548,516	-		Psyr_3823	0.15	-1.7
4,548,614	+		Psyr_3823	0.17	-1.4
4,548,614	+		Psyr_3823	0.17	-0.1
4,548,615	-		Psyr_3823	0.17	+0.8
4,548,615	-		Psyr_3823	0.17	-0.2
4,548,702	-		Psyr_3823	0.19	+1.2
4,548,887	+		Psyr_3823	0.23	-0.1
4,548,888	-		Psyr_3823	0.23	-0.8
4,549,250	+		Psyr_3823	0.30	+0.8
4,549,250	+		Psyr_3823	0.30	+0.6
4,549,250	+		Psyr_3823	0.30	+1.8
4,549,250	+		Psyr_3823	0.30	-1.9
4,549,250	+		Psyr_3823	0.30	+1.1
4,549,251	-		Psyr_3823	0.30	-0.5
4,549,251	-		Psyr_3823	0.30	+0.3
4,549,251	-		Psyr_3823	0.30	+0.1
4,549,274	+		Psyr_3823	0.31	+0.4
4,549,274	+		Psyr_3823	0.31	+1.1
4,549,274	+		Psyr_3823	0.31	-0.5
4,549,274	+		Psyr_3823	0.31	+0.3
4,549,274	+		Psyr_3823	0.31	-0.1
4,549,275	-		Psyr_3823	0.31	-1.5
4,549,550	+		Psyr_3823	0.37	-1.3
4,549,550	+		Psyr_3823	0.37	-0.1
4,549,550	+		Psyr_3823	0.37	+1.7
4,549,551	-		Psyr_3823	0.37	+0.4
4,549,551	-		Psyr_3823	0.37	+1.0
4,549,551	-		Psyr_3823	0.37	+1.9
4,549,551	-		Psyr_3823	0.37	+1.7
4,549,551	-		Psyr_3823	0.37	+0.8
4,549,551	-		Psyr_3823	0.37	-0.7
4,549,551	-		Psyr_3823	0.37	+1.9
4,549,572	-		Psyr_3823	0.37	-1.7
4,549,580	+		Psyr_3823	0.37	-0.9
4,549,581	-		Psyr_3823	0.37	+0.5
4,549,700	+		Psyr_3823	0.40	-0.8
4,549,700	+		Psyr_3823	0.40	+0.2
4,549,700	+		Psyr_3823	0.40	+0.3
4,549,701	-		Psyr_3823	0.40	+0.0
4,549,733	+		Psyr_3823	0.40	-2.0
4,549,733	+		Psyr_3823	0.40	+0.6
4,549,733	+		Psyr_3823	0.40	-0.9
4,549,733	+		Psyr_3823	0.40	-1.2
4,549,733	+		Psyr_3823	0.40	+1.2
4,549,733	+		Psyr_3823	0.40	-0.7
4,549,734	-		Psyr_3823	0.40	-0.9
4,549,734	-		Psyr_3823	0.40	-0.7
4,549,734	-		Psyr_3823	0.40	-1.4
4,549,734	-		Psyr_3823	0.40	+0.6
4,549,734	-		Psyr_3823	0.40	-0.6
4,549,734	-		Psyr_3823	0.40	-0.9
4,549,734	-		Psyr_3823	0.40	+0.7
4,549,870	+		Psyr_3823	0.43	-1.2
4,549,871	-		Psyr_3823	0.43	-0.4
4,549,967	+		Psyr_3823	0.45	-0.4
4,549,967	+		Psyr_3823	0.45	-2.6
4,549,967	+		Psyr_3823	0.45	+1.2
4,549,968	-		Psyr_3823	0.45	-0.1
4,549,968	-		Psyr_3823	0.45	-0.1
4,549,968	-		Psyr_3823	0.45	-1.4
4,550,073	-		Psyr_3823	0.47	-0.1
4,550,192	+		Psyr_3823	0.50	-0.0
4,550,212	+		Psyr_3823	0.50	+0.3
4,550,300	+				+1.5
4,550,330	+		Psyr_3823	0.53	-1.3
4,550,330	+		Psyr_3823	0.53	+0.1
4,550,396	+		Psyr_3823	0.54	+0.9
4,550,396	+		Psyr_3823	0.54	-0.3
4,550,396	+		Psyr_3823	0.54	+0.6
4,550,396	+		Psyr_3823	0.54	-0.1
4,550,396	+		Psyr_3823	0.54	+3.0
4,550,396	+		Psyr_3823	0.54	+0.1
4,550,397	-		Psyr_3823	0.54	-0.6
4,550,397	-		Psyr_3823	0.54	+0.9
4,550,397	-		Psyr_3823	0.54	-0.8
4,550,397	-		Psyr_3823	0.54	-0.2
4,550,424	+		Psyr_3823	0.55	-0.3
4,550,424	+		Psyr_3823	0.55	+0.7
4,550,424	+		Psyr_3823	0.55	-1.5
4,550,424	+		Psyr_3823	0.55	+0.9
4,550,425	-		Psyr_3823	0.55	-0.4
4,550,425	-		Psyr_3823	0.55	+0.6
4,550,425	-		Psyr_3823	0.55	+0.8
4,550,425	-		Psyr_3823	0.55	-0.7
4,550,425	-		Psyr_3823	0.55	+1.5
4,550,480	+		Psyr_3823	0.56	+0.4
4,550,480	+		Psyr_3823	0.56	+0.9
4,550,480	+		Psyr_3823	0.56	-0.6
4,550,480	+		Psyr_3823	0.56	+1.4
4,550,480	+		Psyr_3823	0.56	-0.7
4,550,480	+		Psyr_3823	0.56	+1.7
4,550,480	+		Psyr_3823	0.56	+1.9
4,550,481	-		Psyr_3823	0.56	+1.2
4,550,481	-		Psyr_3823	0.56	-0.0
4,550,481	-		Psyr_3823	0.56	-0.2
4,550,481	-		Psyr_3823	0.56	+0.3
4,550,481	-		Psyr_3823	0.56	-1.1
4,550,481	-		Psyr_3823	0.56	-0.7
4,550,513	+		Psyr_3823	0.56	-1.5
4,550,513	+		Psyr_3823	0.56	+0.6
4,550,513	+		Psyr_3823	0.56	-1.9
4,550,513	+		Psyr_3823	0.56	+0.1
4,550,513	+		Psyr_3823	0.56	+0.5
4,550,514	-		Psyr_3823	0.57	-0.3
4,550,514	-		Psyr_3823	0.57	+0.5
4,550,514	-		Psyr_3823	0.57	-0.1
4,550,514	-		Psyr_3823	0.57	-0.2
4,550,514	-		Psyr_3823	0.57	-0.6
4,550,607	+		Psyr_3823	0.58	+0.0
4,550,748	-		Psyr_3823	0.61	+1.7
4,551,044	+		Psyr_3823	0.67	-0.4
4,551,044	+		Psyr_3823	0.67	-0.5
4,551,044	+		Psyr_3823	0.67	+0.2
4,551,044	+		Psyr_3823	0.67	-1.3
4,551,044	+		Psyr_3823	0.67	+0.3
4,551,044	+		Psyr_3823	0.67	-1.0
4,551,044	+		Psyr_3823	0.67	-0.8
4,551,045	-		Psyr_3823	0.67	+0.1
4,551,045	-		Psyr_3823	0.67	+0.0
4,551,107	+		Psyr_3823	0.69	+0.2
4,551,107	+		Psyr_3823	0.69	-2.0
4,551,107	+		Psyr_3823	0.69	-0.0
4,551,107	+		Psyr_3823	0.69	-1.5
4,551,107	+		Psyr_3823	0.69	-0.2
4,551,107	+		Psyr_3823	0.69	+2.2
4,551,108	-		Psyr_3823	0.69	-0.1
4,551,108	-		Psyr_3823	0.69	+0.8
4,551,108	-		Psyr_3823	0.69	+0.6
4,551,108	-		Psyr_3823	0.69	+0.9
4,551,158	+		Psyr_3823	0.70	-3.2
4,551,464	-		Psyr_3823	0.76	-1.1
4,551,464	-		Psyr_3823	0.76	-1.0
4,551,464	-		Psyr_3823	0.76	+0.5
4,551,464	-		Psyr_3823	0.76	-1.2
4,551,572	+		Psyr_3823	0.78	-1.9
4,551,572	+		Psyr_3823	0.78	+0.7
4,551,572	+		Psyr_3823	0.78	-1.9
4,551,572	+		Psyr_3823	0.78	+0.5
4,551,572	+		Psyr_3823	0.78	-0.7
4,551,572	+		Psyr_3823	0.78	-0.1
4,551,572	+		Psyr_3823	0.78	-0.0
4,551,572	+		Psyr_3823	0.78	+0.2
4,551,572	+		Psyr_3823	0.78	+0.2
4,551,572	+		Psyr_3823	0.78	+0.9
4,551,573	-		Psyr_3823	0.78	+0.8
4,551,573	-		Psyr_3823	0.78	-1.2
4,551,573	-		Psyr_3823	0.78	-0.9
4,551,573	-		Psyr_3823	0.78	+1.4
4,551,573	-		Psyr_3823	0.78	+0.8
4,551,573	-		Psyr_3823	0.78	-1.3
4,551,758	-		Psyr_3823	0.82	-0.2
4,551,821	+		Psyr_3823	0.84	-1.6
4,551,821	+		Psyr_3823	0.84	+0.9
4,551,821	+		Psyr_3823	0.84	-1.4
4,551,821	+		Psyr_3823	0.84	+0.3
4,551,822	-		Psyr_3823	0.84	-2.1
4,551,822	-		Psyr_3823	0.84	+0.9
4,551,822	-		Psyr_3823	0.84	-2.0
4,551,824	+		Psyr_3823	0.84	-0.9
4,551,824	+		Psyr_3823	0.84	-0.5
4,551,824	+		Psyr_3823	0.84	+0.4
4,551,824	+		Psyr_3823	0.84	-1.6
4,551,824	+		Psyr_3823	0.84	+0.1
4,551,825	-		Psyr_3823	0.84	+1.6
4,551,889	+		Psyr_3823	0.85	-0.5
4,551,896	+		Psyr_3823	0.85	+0.1
4,551,896	+		Psyr_3823	0.85	-0.9
4,551,896	+		Psyr_3823	0.85	+1.9
4,551,897	-		Psyr_3823	0.85	+1.3
4,551,897	-		Psyr_3823	0.85	+0.3
4,551,897	-		Psyr_3823	0.85	-0.9
4,551,914	+		Psyr_3823	0.85	-1.4
4,551,915	-		Psyr_3823	0.85	-1.0
4,551,915	-		Psyr_3823	0.85	-0.5
4,552,001	+		Psyr_3823	0.87	-1.3
4,552,058	+		Psyr_3823	0.88	-0.2
4,552,059	-		Psyr_3823	0.88	+0.9
4,552,319	+				-0.6
4,552,319	+				+4.0
4,552,319	+				-0.1
4,552,319	+				+1.4
4,552,319	+				-2.6
4,552,320	-				-2.4
4,552,320	-				-1.1
4,552,320	-				+0.7
4,552,524	+				+0.0
4,552,524	+				-0.7
4,552,524	+				+2.8
4,552,525	-				-0.7
4,552,525	-				-0.7
4,552,638	+				+0.3
4,552,693	+				-1.4
4,552,693	+				-0.7
4,552,694	-				+0.3
4,552,786	+				+2.0
4,552,787	-				+2.2
4,552,787	-				-0.8
4,552,798	-				+0.1
4,552,839	-		Psyr_3824	0.12	-0.7
4,552,955	+		Psyr_3824	0.49	+0.3
4,552,956	-		Psyr_3824	0.49	-3.2
4,552,956	-		Psyr_3824	0.49	-0.4
4,552,956	-		Psyr_3824	0.49	-0.1
4,552,965	+		Psyr_3824	0.52	-0.0
4,552,966	-		Psyr_3824	0.52	+0.4
4,552,998	+		Psyr_3824	0.62	-1.3
4,553,016	+		Psyr_3824	0.68	+0.3
4,553,016	+		Psyr_3824	0.68	+0.6
4,553,016	+		Psyr_3824	0.68	+0.4
4,553,017	-		Psyr_3824	0.68	+0.3
4,553,017	-		Psyr_3824	0.68	+0.6
4,553,062	-		Psyr_3824	0.83	+0.6
4,553,147	+				-1.0
4,553,148	-				-0.3
4,553,148	-				+0.2
4,553,167	+				-1.2
4,553,168	-				+1.2
4,553,168	-				-1.9
4,553,168	-				-1.9
4,553,178	+				-1.4
4,553,178	+				-0.7
4,553,178	+				-0.2
4,553,179	-				-0.0
4,553,179	-				+0.5
4,553,179	-				-0.3
4,553,179	-				+0.2
4,553,179	-				-0.1
4,553,298	+		Psyr_3825	0.12	+0.6
4,553,298	+		Psyr_3825	0.12	-0.1
4,553,298	+		Psyr_3825	0.12	-0.5
4,553,299	-		Psyr_3825	0.12	-0.2
4,553,299	-		Psyr_3825	0.12	+0.3
4,553,386	+		Psyr_3825	0.22	-2.2
4,553,500	-		Psyr_3825	0.34	+1.2