Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2577

Experiment: apoplastic; Pepper

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Pepper
3,000,316	+				-1.4
3,000,317	-				+2.0
3,000,427	+				+3.2
3,000,427	+				-1.8
3,000,428	-				+0.1
3,000,428	-				-1.3
3,000,428	-				-1.9
3,000,428	-				+1.6
3,000,428	-				+0.1
3,000,428	-				+2.1
3,000,512	-				+2.1
3,000,669	-				+0.6
3,000,687	+				+0.4
3,000,781	+				-0.8
3,000,844	+				+1.2
3,000,845	-				+2.9
3,001,149	+				+1.0
3,001,150	-				+1.2
3,001,150	-				+1.0
3,001,599	+				+0.3
3,001,600	-				+1.0
3,001,706	-				+0.8
3,001,969	+				-2.3
3,001,989	+				-0.0
3,001,989	+				-0.4
3,001,989	+				+0.2
3,001,990	-				-0.4
3,001,990	-				+0.8
3,001,990	-				-0.7
3,001,990	-				-0.9
3,002,263	+				-0.9
3,002,506	-				-0.4
3,002,669	+				+0.2
3,002,670	-				-0.0
3,002,679	+				-1.2
3,002,679	+				-1.5
3,002,679	+				+1.0
3,002,679	+				-0.1
3,002,680	-				+0.7
3,002,680	-				+0.6
3,002,681	+				+0.3
3,002,681	+				-0.2
3,002,681	+				+1.4
3,002,890	+				-0.8
3,002,891	-				+1.9
3,002,891	-				+1.1
3,002,969	-				+0.3
3,003,277	-		Psyr_2577	0.12	-1.3
3,003,285	+		Psyr_2577	0.12	+4.0
3,003,286	-		Psyr_2577	0.12	-2.9
3,003,687	+		Psyr_2577	0.14	-0.4
3,003,687	+		Psyr_2577	0.14	+0.4
3,003,783	+		Psyr_2577	0.15	+2.1
3,003,784	-		Psyr_2577	0.15	+2.8
3,003,837	+		Psyr_2577	0.15	+0.6
3,003,837	+		Psyr_2577	0.15	+1.2
3,003,837	+		Psyr_2577	0.15	+0.7
3,003,837	+		Psyr_2577	0.15	+2.1
3,003,837	+		Psyr_2577	0.15	+0.6
3,003,838	-		Psyr_2577	0.15	+0.9
3,003,838	-		Psyr_2577	0.15	-0.8
3,003,838	-		Psyr_2577	0.15	-0.7
3,003,838	-		Psyr_2577	0.15	+1.0
3,004,141	-		Psyr_2577	0.17	-0.9
3,004,218	+		Psyr_2577	0.17	+0.6
3,004,219	-		Psyr_2577	0.17	+0.3
3,004,219	-		Psyr_2577	0.17	+1.7
3,004,219	-		Psyr_2577	0.17	-0.2
3,004,219	-		Psyr_2577	0.17	+1.6
3,004,219	-		Psyr_2577	0.17	-0.4
3,004,220	+		Psyr_2577	0.17	-2.8
3,004,220	+		Psyr_2577	0.17	-0.3
3,004,220	+		Psyr_2577	0.17	+1.4
3,004,221	-		Psyr_2577	0.17	+0.6
3,004,221	-		Psyr_2577	0.17	+0.4
3,004,221	-		Psyr_2577	0.17	-1.4
3,004,241	-		Psyr_2577	0.17	-0.1
3,004,678	-		Psyr_2577	0.20	-2.0
3,004,859	-		Psyr_2577	0.21	-0.9
3,004,859	-		Psyr_2577	0.21	+0.1
3,004,859	-		Psyr_2577	0.21	-1.8
3,005,113	-		Psyr_2577	0.22	-0.3
3,005,257	-		Psyr_2577	0.23	+0.4
3,005,842	-		Psyr_2577	0.26	-2.3
3,006,039	+		Psyr_2577	0.27	+1.0
3,006,039	+		Psyr_2577	0.27	+1.9
3,006,040	-		Psyr_2577	0.27	-2.6
3,006,250	-		Psyr_2577	0.28	+1.8
3,006,250	-		Psyr_2577	0.28	-0.4
3,006,251	+		Psyr_2577	0.28	+1.5
3,006,850	-		Psyr_2577	0.32	+1.8
3,006,850	-		Psyr_2577	0.32	-1.0
3,006,850	-		Psyr_2577	0.32	+0.4
3,006,960	+		Psyr_2577	0.32	-1.0
3,006,960	+		Psyr_2577	0.32	+0.3
3,006,961	-		Psyr_2577	0.32	+0.3
3,006,961	-		Psyr_2577	0.32	+1.1
3,006,961	-		Psyr_2577	0.32	-0.2
3,007,015	-		Psyr_2577	0.33	-0.2
3,007,015	-		Psyr_2577	0.33	-0.1
3,007,167	+		Psyr_2577	0.34	+1.1
3,007,167	+		Psyr_2577	0.34	+1.6
3,007,167	+		Psyr_2577	0.34	+0.2
3,007,167	+		Psyr_2577	0.34	+1.8
3,007,168	-		Psyr_2577	0.34	-0.7
3,007,168	-		Psyr_2577	0.34	-0.3
3,007,317	+		Psyr_2577	0.34	+0.6
3,007,320	+		Psyr_2577	0.34	-0.8
3,007,320	+		Psyr_2577	0.34	+0.7
3,007,321	-		Psyr_2577	0.34	+1.9
3,007,321	-		Psyr_2577	0.34	+1.3
3,007,395	+		Psyr_2577	0.35	+2.7
3,007,395	+		Psyr_2577	0.35	+0.7
3,007,396	-		Psyr_2577	0.35	-0.5
3,007,413	+		Psyr_2577	0.35	+1.1
3,007,413	+		Psyr_2577	0.35	+0.7
3,007,417	+		Psyr_2577	0.35	+1.2
3,007,417	+		Psyr_2577	0.35	-0.1
3,007,418	-		Psyr_2577	0.35	-1.3
3,007,418	-		Psyr_2577	0.35	+0.4
3,007,880	+		Psyr_2577	0.38	-1.0
3,007,950	+		Psyr_2577	0.38	+1.3
3,008,039	+		Psyr_2577	0.38	-0.2
3,008,193	+		Psyr_2577	0.39	-1.3
3,008,275	+		Psyr_2577	0.40	+0.1
3,008,276	-		Psyr_2577	0.40	-1.3
3,008,276	-		Psyr_2577	0.40	-0.7
3,008,349	+		Psyr_2577	0.40	+0.1
3,008,349	+		Psyr_2577	0.40	+0.3
3,008,349	+		Psyr_2577	0.40	-1.8
3,008,350	-		Psyr_2577	0.40	+1.7
3,008,587	+		Psyr_2577	0.42	+0.1
3,008,621	-		Psyr_2577	0.42	-0.3
3,008,693	+		Psyr_2577	0.42	+0.3
3,008,693	+		Psyr_2577	0.42	+2.1
3,008,693	+		Psyr_2577	0.42	+0.7
3,008,952	-		Psyr_2577	0.44	+0.6
3,009,049	-		Psyr_2577	0.44	-1.8
3,009,049	-		Psyr_2577	0.44	+1.3
3,009,049	-		Psyr_2577	0.44	-0.8
3,009,184	-		Psyr_2577	0.45	-0.4
3,009,279	+		Psyr_2577	0.45	+0.1
3,009,279	+		Psyr_2577	0.45	-0.0
3,009,319	-		Psyr_2577	0.46	+2.0
3,009,329	-		Psyr_2577	0.46	+0.3
3,009,426	+		Psyr_2577	0.46	-0.3
3,009,427	-		Psyr_2577	0.46	-1.0
3,009,468	+		Psyr_2577	0.47	-0.8
3,009,468	+		Psyr_2577	0.47	-1.4
3,009,469	-		Psyr_2577	0.47	+1.4
3,009,469	-		Psyr_2577	0.47	-0.9
3,009,469	-		Psyr_2577	0.47	-0.6
3,009,469	-		Psyr_2577	0.47	+1.1
3,009,516	-		Psyr_2577	0.47	-0.6
3,009,621	+		Psyr_2577	0.47	+1.7
3,009,622	-		Psyr_2577	0.47	+1.4
3,009,630	+		Psyr_2577	0.47	-1.3
3,009,630	+		Psyr_2577	0.47	-0.3
3,009,630	+		Psyr_2577	0.47	+0.3
3,009,630	+		Psyr_2577	0.47	+1.7
3,009,630	+		Psyr_2577	0.47	-0.4
3,009,630	+		Psyr_2577	0.47	+2.5
3,009,630	+		Psyr_2577	0.47	+0.7
3,009,630	+		Psyr_2577	0.47	-1.2
3,009,630	+		Psyr_2577	0.47	+0.0
3,009,630	+		Psyr_2577	0.47	+2.2
3,009,631	-		Psyr_2577	0.47	+0.8
3,009,631	-		Psyr_2577	0.47	+2.1
3,009,631	-		Psyr_2577	0.47	-0.2
3,009,631	-		Psyr_2577	0.47	+1.8
3,009,631	-		Psyr_2577	0.47	+0.6
3,009,631	-		Psyr_2577	0.47	+1.4
3,009,631	-		Psyr_2577	0.47	+2.8
3,009,631	-		Psyr_2577	0.47	-0.6
3,009,631	-		Psyr_2577	0.47	+0.7
3,009,632	+		Psyr_2577	0.47	+0.3
3,009,632	+		Psyr_2577	0.47	-0.2
3,009,633	-		Psyr_2577	0.47	+0.7
3,009,664	+		Psyr_2577	0.48	+1.0
3,009,711	+		Psyr_2577	0.48	+1.8
3,009,921	+		Psyr_2577	0.49	+0.6
3,010,155	+		Psyr_2577	0.50	+0.2
3,010,210	-		Psyr_2577	0.51	-1.0
3,010,210	-		Psyr_2577	0.51	+1.7
3,010,590	+		Psyr_2577	0.53	-1.0
3,010,590	+		Psyr_2577	0.53	-0.2
3,010,590	+		Psyr_2577	0.53	-0.1
3,010,590	+		Psyr_2577	0.53	+0.2
3,010,591	-		Psyr_2577	0.53	+0.2
3,010,591	-		Psyr_2577	0.53	-0.8
3,010,591	-		Psyr_2577	0.53	+0.8
3,010,591	-		Psyr_2577	0.53	-0.6
3,011,049	+		Psyr_2577	0.55	-1.0
3,011,049	+		Psyr_2577	0.55	-0.3
3,011,050	-		Psyr_2577	0.55	+0.4
3,011,050	-		Psyr_2577	0.55	+0.6
3,011,428	-		Psyr_2577	0.58	+2.6
3,011,647	+		Psyr_2577	0.59	-1.0
3,011,712	+		Psyr_2577	0.59	+1.1
3,011,712	+		Psyr_2577	0.59	+1.0
3,011,712	+		Psyr_2577	0.59	+1.2
3,011,713	-		Psyr_2577	0.59	-0.6
3,011,713	-		Psyr_2577	0.59	+1.0
3,011,713	-		Psyr_2577	0.59	+0.2
3,011,713	-		Psyr_2577	0.59	+0.6
3,011,888	+		Psyr_2577	0.60	-0.4
3,012,163	-		Psyr_2577	0.62	-0.3
3,012,211	-		Psyr_2577	0.62	+1.1
3,012,297	+		Psyr_2577	0.62	+0.0
3,012,576	+		Psyr_2577	0.64	+1.2
3,012,576	+		Psyr_2577	0.64	-0.3
3,012,577	-		Psyr_2577	0.64	+0.0
3,012,577	-		Psyr_2577	0.64	+1.9
3,012,577	-		Psyr_2577	0.64	+1.6
3,012,613	+		Psyr_2577	0.64	+1.4
3,012,618	+		Psyr_2577	0.64	-2.4
3,012,643	+		Psyr_2577	0.64	-2.6
3,012,644	-		Psyr_2577	0.64	+2.0
3,012,780	+		Psyr_2577	0.65	-0.7
3,012,781	-		Psyr_2577	0.65	+1.3
3,012,781	-		Psyr_2577	0.65	+0.6
3,012,789	+		Psyr_2577	0.65	+0.7
3,012,790	-		Psyr_2577	0.65	+1.3
3,013,105	-		Psyr_2577	0.67	-1.0
3,013,191	+		Psyr_2577	0.67	-2.1
3,013,192	-		Psyr_2577	0.67	-1.6
3,013,192	-		Psyr_2577	0.67	-0.4
3,013,341	+		Psyr_2577	0.68	-0.3
3,013,341	+		Psyr_2577	0.68	+1.2
3,013,341	+		Psyr_2577	0.68	-1.4
3,013,494	+		Psyr_2577	0.69	+0.7
3,013,690	+		Psyr_2577	0.70	+0.9
3,013,690	+		Psyr_2577	0.70	+1.0
3,013,691	-		Psyr_2577	0.70	+0.4
3,013,723	-		Psyr_2577	0.70	+1.8
3,014,198	+		Psyr_2577	0.73	-1.0
3,014,250	+		Psyr_2577	0.73	+1.6
3,014,251	-		Psyr_2577	0.73	+0.9
3,014,494	+		Psyr_2577	0.75	-1.4
3,014,494	+		Psyr_2577	0.75	-0.4
3,014,495	-		Psyr_2577	0.75	-0.4
3,014,495	-		Psyr_2577	0.75	-0.4
3,014,495	-		Psyr_2577	0.75	+0.8
3,014,676	+		Psyr_2577	0.76	-0.0
3,014,677	-		Psyr_2577	0.76	+1.0
3,014,677	-		Psyr_2577	0.76	+0.3
3,014,677	-		Psyr_2577	0.76	-0.2
3,014,770	-		Psyr_2577	0.76	-0.3
3,014,915	-		Psyr_2577	0.77	+0.2
3,015,283	-		Psyr_2577	0.79	+1.8
3,015,375	+		Psyr_2577	0.80	+1.2
3,015,376	-		Psyr_2577	0.80	+1.1
3,015,449	+		Psyr_2577	0.80	+1.4
3,015,535	+		Psyr_2577	0.81	+0.6
3,015,535	+		Psyr_2577	0.81	+1.8
3,015,535	+		Psyr_2577	0.81	+0.4
3,015,536	-		Psyr_2577	0.81	+0.4
3,015,536	-		Psyr_2577	0.81	-1.2
3,015,536	-		Psyr_2577	0.81	+0.5
3,015,536	-		Psyr_2577	0.81	+1.6
3,015,582	-		Psyr_2577	0.81	+0.4
3,015,754	-		Psyr_2577	0.82	-0.4
3,015,795	+		Psyr_2577	0.82	+1.4
3,015,795	+		Psyr_2577	0.82	-0.4
3,015,796	-		Psyr_2577	0.82	+1.7
3,015,958	-		Psyr_2577	0.83	-0.0
3,015,966	+		Psyr_2577	0.83	-0.3
3,015,966	+		Psyr_2577	0.83	+1.9
3,015,967	-		Psyr_2577	0.83	+1.0
3,016,279	+		Psyr_2577	0.85	+1.0
3,016,280	-		Psyr_2577	0.85	+1.6
3,016,368	+		Psyr_2577	0.85	-0.7
3,016,369	-		Psyr_2577	0.85	+0.6
3,016,369	-		Psyr_2577	0.85	+1.0
3,016,464	+		Psyr_2577	0.86	+1.9
3,016,464	+		Psyr_2577	0.86	-0.1
3,016,465	-		Psyr_2577	0.86	+1.4
3,016,468	+		Psyr_2577	0.86	+1.1
3,016,468	+		Psyr_2577	0.86	+1.3
3,016,469	-		Psyr_2577	0.86	-1.4
3,016,469	-		Psyr_2577	0.86	-0.4
3,016,518	+		Psyr_2577	0.86	+0.3
3,016,519	-		Psyr_2577	0.86	+1.7
3,016,519	-		Psyr_2577	0.86	+1.6
3,016,519	-		Psyr_2577	0.86	+0.1
3,016,624	-		Psyr_2577	0.87	-0.6
3,016,671	+		Psyr_2577	0.87	+1.2
3,016,672	-		Psyr_2577	0.87	-0.4
3,016,822	-		Psyr_2577	0.88	+1.7
3,016,893	+		Psyr_2577	0.88	+1.9
3,016,893	+		Psyr_2577	0.88	+0.9
3,016,893	+		Psyr_2577	0.88	-0.8
3,016,893	+		Psyr_2577	0.88	+0.1
3,016,894	-		Psyr_2577	0.88	-0.0
3,016,894	-		Psyr_2577	0.88	-0.0
3,016,915	+		Psyr_2577	0.88	-0.1
3,017,334	+				-0.0
3,017,416	+				-0.4
3,017,589	+				+1.7
3,017,589	+				-1.5
3,017,589	+				+1.0
3,017,589	+				+0.6
3,017,589	+				+2.1
3,017,589	+				-0.4
3,017,589	+				-0.6
3,017,589	+				+0.0
3,017,589	+				-1.5
3,017,589	+				+0.6
3,017,590	-				+0.8
3,017,590	-				-0.3
3,017,590	-				+0.3
3,017,590	-				-0.4
3,017,590	-				+0.5
3,017,590	-				+1.3
3,017,590	-				+0.6
3,017,590	-				-1.3
3,017,590	-				+3.5
3,017,799	+				-1.4
3,017,800	-				-0.8
3,017,884	-				+0.6
3,018,029	+				+0.7
3,018,030	-				-0.2
3,018,030	-				-0.9
3,018,918	+				+1.1
3,018,918	+				-0.0
3,019,129	+				+1.5
3,019,129	+				+0.1
3,019,130	-				+1.9
3,019,130	-				+1.7
3,019,130	-				-1.2
3,019,130	-				+1.0
3,019,130	-				+2.4
3,019,130	-				+1.0
3,019,130	-				-0.7
3,019,130	-				-1.4
3,019,355	+		Psyr_2578	0.38	+0.1
3,019,356	-		Psyr_2578	0.38	+1.0
3,019,489	-		Psyr_2578	0.58	+0.8
3,019,495	-		Psyr_2578	0.59	+2.6
3,019,500	-		Psyr_2578	0.59	-0.1
3,019,749	+				-2.0
3,019,750	-				-2.0
3,019,765	+				+1.1
3,019,765	+				+2.0
3,019,765	+				-1.3
3,019,766	-				-1.4
3,019,766	-				+0.0
3,019,766	-				+0.6
3,019,766	-				+1.1
3,019,801	+				-1.8
3,019,811	-				+0.7
3,019,811	-				-0.3
3,019,867	+				-1.0
3,019,868	-				+0.6
3,019,927	+				+1.3
3,019,927	+				-0.4
3,019,927	+				-0.4
3,019,928	-				-1.8
3,019,931	+				-2.8
3,019,931	+				+1.0
3,019,931	+				-1.8