Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1884

Experiment: apoplastic; Pepper

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Pepper
2,154,567	-				+1.5
2,154,651	+				+0.3
2,154,652	-				-0.5
2,154,670	+				+0.4
2,154,782	+		Psyr_1883	0.27	-0.4
2,154,844	+		Psyr_1883	0.51	+0.6
2,154,844	+		Psyr_1883	0.51	-0.4
2,154,844	+		Psyr_1883	0.51	-0.7
2,154,845	-		Psyr_1883	0.52	+0.4
2,154,845	-		Psyr_1883	0.52	+0.1
2,154,848	+		Psyr_1883	0.53	-0.3
2,154,872	+		Psyr_1883	0.62	-0.2
2,154,982	+				+0.1
2,154,982	+				-0.5
2,155,141	+				+0.9
2,155,141	+				-3.0
2,155,142	-				+0.5
2,155,142	-				-1.8
2,155,174	+				+1.0
2,155,174	+				-0.4
2,155,174	+				+1.1
2,155,174	+				+0.7
2,155,174	+				+0.8
2,155,175	-				-2.8
2,155,175	-				-1.2
2,155,175	-				-1.2
2,155,250	+				+0.8
2,155,250	+				-2.0
2,155,250	+				+1.3
2,155,250	+				-1.6
2,155,250	+				-0.0
2,155,250	+				-1.0
2,155,250	+				+2.3
2,155,251	-				-0.5
2,155,251	-				+1.3
2,155,251	-				+1.3
2,155,251	-				+0.6
2,155,251	-				+0.3
2,155,251	-				-0.3
2,155,258	+				+0.8
2,155,266	+				-0.6
2,155,308	+				-2.0
2,155,308	+				+0.5
2,155,308	+				-0.6
2,155,309	-				+0.7
2,155,309	-				-2.2
2,155,338	-				+0.2
2,155,375	+				+0.8
2,155,427	-				-1.1
2,155,435	+				-2.0
2,155,436	-				-1.2
2,155,437	+				-0.8
2,155,437	+				+1.8
2,155,437	+				+0.2
2,155,437	+				-1.3
2,155,437	+				-0.6
2,155,437	+				+1.8
2,155,437	+				-0.2
2,155,438	-				-2.3
2,155,438	-				-0.8
2,155,438	-				+0.8
2,155,438	-				-3.4
2,155,438	-				+0.9
2,155,511	+				-0.6
2,155,529	+				+0.9
2,155,529	+				+0.9
2,155,529	+				-0.2
2,155,529	+				-0.3
2,155,533	+				-0.8
2,155,559	+		Psyr_1884	0.11	+0.2
2,155,559	+		Psyr_1884	0.11	-0.4
2,155,560	-		Psyr_1884	0.12	-0.1
2,155,560	-		Psyr_1884	0.12	-0.2
2,155,560	-		Psyr_1884	0.12	-1.8
2,155,560	-		Psyr_1884	0.12	-0.3
2,155,560	-		Psyr_1884	0.12	-1.3
2,155,560	-		Psyr_1884	0.12	-2.9
2,155,560	-		Psyr_1884	0.12	-0.5
2,155,592	-		Psyr_1884	0.29	-0.4
2,155,682	+		Psyr_1884	0.79	-0.8
2,155,682	+		Psyr_1884	0.79	-0.2
2,155,696	+		Psyr_1884	0.87	-1.5
2,155,696	+		Psyr_1884	0.87	-0.6
2,155,696	+		Psyr_1884	0.87	-0.2
2,155,696	+		Psyr_1884	0.87	-0.6
2,155,697	-		Psyr_1884	0.88	-1.5
2,155,697	-		Psyr_1884	0.88	-0.5
2,155,697	-		Psyr_1884	0.88	-0.0
2,155,697	-		Psyr_1884	0.88	-0.6
2,155,736	+				+0.0
2,155,748	+				+1.3
2,155,748	+				+0.5
2,155,748	+				+0.4
2,155,749	-				+0.0
2,155,879	+		Psyr_1885	0.53	+0.2
2,155,880	-		Psyr_1885	0.54	-1.8
2,155,880	-		Psyr_1885	0.54	-0.3
2,155,913	-		Psyr_1885	0.75	+0.6
2,155,980	+				-1.4
2,155,980	+				+0.2
2,155,980	+				+0.4
2,155,981	-				-0.2
2,155,981	-				-0.2
2,155,981	-				-0.1
2,155,990	+				-3.0
2,155,991	-				-0.8
2,155,991	-				+0.3
2,156,079	+				-0.2
2,156,079	+				-0.4
2,156,079	+				+2.8
2,156,079	+				+3.1
2,156,079	+				+0.2
2,156,080	-				+0.9
2,156,080	-				+0.9
2,156,080	-				+2.0
2,156,080	-				-3.3
2,156,080	-				-2.1
2,156,080	-				-1.5
2,156,080	-				+0.3
2,156,080	-				-1.3
2,156,080	-				+1.0
2,156,088	+				+0.0
2,156,096	+				+1.0
2,156,120	+				-0.0
2,156,120	+				-0.8
2,156,121	-				+0.8
2,156,121	-				-1.2
2,156,121	-				+0.4
2,156,121	-				-0.1
2,156,133	+				-0.7
2,156,133	+				-2.2
2,156,161	-				-0.2
2,156,164	+				-0.8
2,156,165	-				-1.0
2,156,165	-				+2.2
2,156,165	-				+0.0
2,156,165	-				-0.2
2,156,172	+				+0.3
2,156,173	-				+0.6
2,156,203	+				-0.6
2,156,203	+				-1.6
2,156,204	-				+1.4
2,156,204	-				-2.0
2,156,204	-				-2.3
2,156,204	-				-0.6
2,156,256	+		Psyr_1886	0.12	-0.6
2,156,256	+		Psyr_1886	0.12	+0.7
2,156,256	+		Psyr_1886	0.12	-0.3
2,156,256	+		Psyr_1886	0.12	+0.8
2,156,256	+		Psyr_1886	0.12	+1.4
2,156,257	-		Psyr_1886	0.12	-0.9
2,156,257	-		Psyr_1886	0.12	+0.2
2,156,257	-		Psyr_1886	0.12	+1.4
2,156,257	-		Psyr_1886	0.12	+0.2
2,156,257	-		Psyr_1886	0.12	+1.2
2,156,257	-		Psyr_1886	0.12	+1.3
2,156,292	-		Psyr_1886	0.14	-0.1
2,156,295	+		Psyr_1886	0.14	-0.2
2,156,296	-		Psyr_1886	0.14	+2.1
2,156,296	-		Psyr_1886	0.14	-0.1
2,156,317	+		Psyr_1886	0.16	-0.4
2,156,318	-		Psyr_1886	0.16	+1.1
2,156,318	-		Psyr_1886	0.16	-1.9
2,156,362	+		Psyr_1886	0.19	+0.0
2,156,414	-		Psyr_1886	0.22	+0.5
2,156,420	+		Psyr_1886	0.23	-0.3
2,156,420	+		Psyr_1886	0.23	-0.4
2,156,420	+		Psyr_1886	0.23	+1.8
2,156,421	-		Psyr_1886	0.23	+0.2
2,156,484	-		Psyr_1886	0.27	-0.2
2,156,488	+		Psyr_1886	0.27	+0.1
2,156,488	+		Psyr_1886	0.27	-2.8
2,156,489	-		Psyr_1886	0.27	-0.4
2,156,489	-		Psyr_1886	0.27	-0.6
2,156,489	-		Psyr_1886	0.27	+0.5
2,156,489	-		Psyr_1886	0.27	-0.6
2,156,489	-		Psyr_1886	0.27	-0.6
2,156,489	-		Psyr_1886	0.27	-0.5
2,156,512	+		Psyr_1886	0.29	+2.1
2,156,512	+		Psyr_1886	0.29	-1.0
2,156,512	+		Psyr_1886	0.29	-0.1
2,156,513	-		Psyr_1886	0.29	-0.4
2,156,513	-		Psyr_1886	0.29	-1.2
2,156,513	-		Psyr_1886	0.29	+0.3
2,156,558	+		Psyr_1886	0.32	+1.1
2,156,558	+		Psyr_1886	0.32	+0.9
2,156,559	-		Psyr_1886	0.32	+0.8
2,156,588	+		Psyr_1886	0.34	-1.8
2,156,589	-		Psyr_1886	0.34	-0.7
2,156,589	-		Psyr_1886	0.34	+1.3
2,156,589	-		Psyr_1886	0.34	-0.8
2,156,589	-		Psyr_1886	0.34	+0.0
2,156,589	-		Psyr_1886	0.34	-0.2
2,156,606	+		Psyr_1886	0.35	-2.2
2,156,606	+		Psyr_1886	0.35	-0.0
2,156,644	+		Psyr_1886	0.38	-1.4
2,156,645	-		Psyr_1886	0.38	-0.2
2,156,645	-		Psyr_1886	0.38	+3.3
2,156,665	+		Psyr_1886	0.39	-0.0
2,156,665	+		Psyr_1886	0.39	-1.6
2,156,665	+		Psyr_1886	0.39	-1.8
2,156,666	-		Psyr_1886	0.39	+0.3
2,156,666	-		Psyr_1886	0.39	-1.6
2,156,666	-		Psyr_1886	0.39	+1.8
2,156,695	-		Psyr_1886	0.41	-2.7
2,156,702	-		Psyr_1886	0.42	-1.5