Experiment: apoplastic; Pepper
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0660 and Psyr_0661 are separated by 159 nucleotides Psyr_0661 and Psyr_0662 are separated by 78 nucleotides
Psyr_0660: Psyr_0660 - transcriptional regulator, ArsR family, at 748,513 to 749,205
_0660
Psyr_0661: Psyr_0661 - adenosine deaminase, at 749,365 to 750,318
_0661
Psyr_0662: Psyr_0662 - 2OG-Fe(II) oxygenase superfamily, at 750,397 to 751,362
_0662
Position (kb) 749
750
751 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 748.367 kb on + strand at 748.368 kb on - strand at 748.404 kb on - strand at 748.404 kb on - strand at 748.410 kb on + strand at 748.412 kb on + strand at 748.412 kb on + strand at 748.412 kb on + strand at 748.413 kb on - strand at 748.413 kb on - strand at 748.413 kb on - strand at 748.423 kb on - strand at 748.423 kb on - strand at 748.423 kb on - strand at 748.423 kb on - strand at 748.426 kb on + strand at 748.426 kb on + strand at 748.426 kb on + strand at 748.426 kb on + strand at 748.426 kb on + strand at 748.426 kb on + strand at 748.426 kb on + strand at 748.426 kb on + strand at 748.426 kb on + strand at 748.427 kb on - strand at 748.427 kb on - strand at 748.427 kb on - strand at 748.427 kb on - strand at 748.427 kb on - strand at 748.428 kb on + strand at 748.428 kb on + strand at 748.428 kb on + strand at 748.428 kb on + strand at 748.428 kb on + strand at 748.429 kb on - strand at 748.429 kb on - strand at 748.429 kb on - strand at 748.429 kb on - strand at 748.429 kb on - strand at 748.429 kb on - strand at 748.483 kb on + strand at 748.483 kb on + strand at 748.483 kb on + strand at 748.483 kb on + strand at 748.483 kb on + strand at 748.484 kb on - strand at 748.484 kb on - strand at 748.484 kb on - strand at 748.484 kb on - strand at 748.484 kb on - strand at 748.484 kb on - strand at 748.484 kb on - strand at 748.484 kb on - strand at 748.599 kb on + strand, within Psyr_0660 at 748.599 kb on + strand, within Psyr_0660 at 748.599 kb on + strand, within Psyr_0660 at 748.600 kb on - strand, within Psyr_0660 at 748.792 kb on - strand, within Psyr_0660 at 748.926 kb on - strand, within Psyr_0660 at 748.926 kb on - strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.993 kb on + strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.994 kb on - strand, within Psyr_0660 at 748.997 kb on + strand, within Psyr_0660 at 749.257 kb on + strand at 749.367 kb on - strand at 749.444 kb on + strand at 749.444 kb on + strand at 749.444 kb on + strand at 749.445 kb on - strand at 749.445 kb on - strand at 749.445 kb on - strand at 749.445 kb on - strand at 749.472 kb on - strand, within Psyr_0661 at 749.711 kb on + strand, within Psyr_0661 at 749.711 kb on + strand, within Psyr_0661 at 749.712 kb on - strand, within Psyr_0661 at 749.712 kb on - strand, within Psyr_0661 at 749.712 kb on - strand, within Psyr_0661 at 750.077 kb on + strand, within Psyr_0661 at 750.095 kb on + strand, within Psyr_0661 at 750.095 kb on + strand, within Psyr_0661 at 750.118 kb on + strand, within Psyr_0661 at 750.118 kb on + strand, within Psyr_0661 at 750.118 kb on + strand, within Psyr_0661 at 750.118 kb on + strand, within Psyr_0661 at 750.119 kb on - strand, within Psyr_0661 at 750.119 kb on - strand, within Psyr_0661 at 750.119 kb on - strand, within Psyr_0661 at 750.119 kb on - strand, within Psyr_0661 at 750.134 kb on + strand, within Psyr_0661 at 750.137 kb on + strand, within Psyr_0661 at 750.137 kb on + strand, within Psyr_0661 at 750.137 kb on + strand, within Psyr_0661 at 750.138 kb on - strand, within Psyr_0661 at 750.138 kb on - strand, within Psyr_0661 at 750.138 kb on - strand, within Psyr_0661 at 750.173 kb on + strand, within Psyr_0661 at 750.173 kb on + strand, within Psyr_0661 at 750.173 kb on + strand, within Psyr_0661 at 750.173 kb on + strand, within Psyr_0661 at 750.173 kb on + strand, within Psyr_0661 at 750.173 kb on + strand, within Psyr_0661 at 750.174 kb on - strand, within Psyr_0661 at 750.314 kb on + strand at 750.314 kb on + strand at 750.314 kb on + strand at 750.314 kb on + strand at 750.314 kb on + strand at 750.314 kb on + strand at 750.314 kb on + strand at 750.314 kb on + strand at 750.314 kb on + strand at 750.315 kb on - strand at 750.315 kb on - strand at 750.315 kb on - strand at 750.315 kb on - strand at 750.315 kb on - strand at 750.315 kb on - strand at 750.315 kb on - strand at 750.315 kb on - strand at 750.315 kb on - strand at 750.318 kb on + strand at 750.318 kb on + strand at 750.318 kb on + strand at 750.318 kb on + strand at 750.318 kb on + strand at 750.318 kb on + strand at 750.318 kb on + strand at 750.319 kb on - strand at 750.319 kb on - strand at 750.319 kb on - strand at 750.319 kb on - strand at 750.354 kb on + strand at 750.354 kb on + strand at 750.354 kb on + strand at 750.354 kb on + strand at 750.355 kb on - strand at 750.355 kb on - strand at 750.428 kb on + strand at 750.428 kb on + strand at 750.428 kb on + strand at 750.428 kb on + strand at 750.429 kb on - strand at 750.429 kb on - strand at 750.429 kb on - strand at 750.429 kb on - strand at 750.429 kb on - strand at 750.433 kb on - strand at 750.433 kb on - strand at 750.740 kb on + strand, within Psyr_0662 at 750.839 kb on - strand, within Psyr_0662 at 750.839 kb on - strand, within Psyr_0662 at 750.944 kb on + strand, within Psyr_0662 at 750.944 kb on + strand, within Psyr_0662 at 750.945 kb on - strand, within Psyr_0662 at 750.945 kb on - strand, within Psyr_0662 at 751.250 kb on + strand, within Psyr_0662 at 751.250 kb on + strand, within Psyr_0662 at 751.250 kb on + strand, within Psyr_0662 at 751.250 kb on + strand, within Psyr_0662 at 751.251 kb on - strand, within Psyr_0662 at 751.251 kb on - strand, within Psyr_0662 at 751.251 kb on - strand, within Psyr_0662 at 751.251 kb on - strand, within Psyr_0662 at 751.251 kb on - strand, within Psyr_0662 at 751.251 kb on - strand, within Psyr_0662
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Pepper remove 748,367 + +1.0 748,368 - +2.0 748,404 - +1.4 748,404 - -1.8 748,410 + -0.7 748,412 + -0.9 748,412 + -1.0 748,412 + +0.4 748,413 - -0.6 748,413 - -3.7 748,413 - -0.0 748,423 - +0.5 748,423 - -0.8 748,423 - -0.1 748,423 - +0.8 748,426 + -0.2 748,426 + -0.2 748,426 + -2.1 748,426 + +0.0 748,426 + +0.2 748,426 + -2.0 748,426 + -2.0 748,426 + -2.6 748,426 + -1.5 748,427 - -1.2 748,427 - -0.0 748,427 - +0.3 748,427 - -1.8 748,427 - -0.9 748,428 + +0.4 748,428 + -3.4 748,428 + -0.7 748,428 + -2.0 748,428 + +0.1 748,429 - +0.8 748,429 - +0.9 748,429 - +0.6 748,429 - -0.2 748,429 - -0.5 748,429 - +0.4 748,483 + -1.7 748,483 + +0.2 748,483 + +0.1 748,483 + +1.6 748,483 + -3.6 748,484 - -1.1 748,484 - -0.6 748,484 - -1.5 748,484 - -0.8 748,484 - +2.0 748,484 - +0.4 748,484 - +0.1 748,484 - +1.2 748,599 + Psyr_0660 0.12 -0.2 748,599 + Psyr_0660 0.12 +0.6 748,599 + Psyr_0660 0.12 -1.5 748,600 - Psyr_0660 0.13 +0.7 748,792 - Psyr_0660 0.40 +0.5 748,926 - Psyr_0660 0.60 +0.1 748,926 - Psyr_0660 0.60 -1.2 748,993 + Psyr_0660 0.69 -0.1 748,993 + Psyr_0660 0.69 -0.6 748,993 + Psyr_0660 0.69 +0.0 748,993 + Psyr_0660 0.69 +0.3 748,993 + Psyr_0660 0.69 +0.5 748,993 + Psyr_0660 0.69 +0.5 748,993 + Psyr_0660 0.69 -0.6 748,993 + Psyr_0660 0.69 +0.7 748,993 + Psyr_0660 0.69 -2.1 748,993 + Psyr_0660 0.69 +0.7 748,993 + Psyr_0660 0.69 +0.3 748,993 + Psyr_0660 0.69 +0.2 748,993 + Psyr_0660 0.69 +1.7 748,993 + Psyr_0660 0.69 -1.6 748,993 + Psyr_0660 0.69 -2.7 748,993 + Psyr_0660 0.69 +0.4 748,993 + Psyr_0660 0.69 -1.5 748,993 + Psyr_0660 0.69 +0.4 748,993 + Psyr_0660 0.69 -0.8 748,993 + Psyr_0660 0.69 +0.4 748,993 + Psyr_0660 0.69 -1.8 748,993 + Psyr_0660 0.69 +1.5 748,993 + Psyr_0660 0.69 -0.4 748,994 - Psyr_0660 0.69 +1.1 748,994 - Psyr_0660 0.69 +2.1 748,994 - Psyr_0660 0.69 +0.5 748,994 - Psyr_0660 0.69 -0.1 748,994 - Psyr_0660 0.69 -2.4 748,994 - Psyr_0660 0.69 +0.5 748,994 - Psyr_0660 0.69 +0.1 748,994 - Psyr_0660 0.69 -1.6 748,994 - Psyr_0660 0.69 -0.4 748,994 - -1.8 748,994 - Psyr_0660 0.69 -1.1 748,994 - Psyr_0660 0.69 +0.3 748,994 - Psyr_0660 0.69 -0.8 748,994 - Psyr_0660 0.69 +0.1 748,994 - Psyr_0660 0.69 +0.0 748,994 - Psyr_0660 0.69 +0.3 748,994 - Psyr_0660 0.69 -2.1 748,994 - Psyr_0660 0.69 -0.6 748,994 - Psyr_0660 0.69 -0.7 748,994 - Psyr_0660 0.69 +3.0 748,994 - Psyr_0660 0.69 -2.6 748,994 - Psyr_0660 0.69 +0.2 748,994 - Psyr_0660 0.69 +0.7 748,994 - Psyr_0660 0.69 -0.4 748,994 - Psyr_0660 0.69 +0.4 748,997 + Psyr_0660 0.70 -0.4 749,257 + +1.9 749,367 - -0.3 749,444 + -0.4 749,444 + +0.8 749,444 + +0.4 749,445 - -0.2 749,445 - +1.3 749,445 - -1.4 749,445 - -0.5 749,472 - Psyr_0661 0.11 +0.4 749,711 + Psyr_0661 0.36 +0.6 749,711 + Psyr_0661 0.36 -1.8 749,712 - Psyr_0661 0.36 +3.5 749,712 - Psyr_0661 0.36 +3.2 749,712 - Psyr_0661 0.36 +1.4 750,077 + Psyr_0661 0.75 -1.0 750,095 + Psyr_0661 0.77 -0.1 750,095 + Psyr_0661 0.77 +0.8 750,118 + Psyr_0661 0.79 +0.2 750,118 + Psyr_0661 0.79 -1.1 750,118 + Psyr_0661 0.79 +0.5 750,118 + Psyr_0661 0.79 +0.7 750,119 - Psyr_0661 0.79 -0.6 750,119 - Psyr_0661 0.79 -0.4 750,119 - Psyr_0661 0.79 +0.0 750,119 - Psyr_0661 0.79 +0.3 750,134 + Psyr_0661 0.81 +0.4 750,137 + Psyr_0661 0.81 -0.7 750,137 + Psyr_0661 0.81 -1.4 750,137 + Psyr_0661 0.81 -1.4 750,138 - Psyr_0661 0.81 -0.3 750,138 - Psyr_0661 0.81 +0.3 750,138 - Psyr_0661 0.81 +0.0 750,173 + Psyr_0661 0.85 +0.2 750,173 + Psyr_0661 0.85 -1.4 750,173 + Psyr_0661 0.85 -1.3 750,173 + Psyr_0661 0.85 -0.8 750,173 + Psyr_0661 0.85 +2.2 750,173 + Psyr_0661 0.85 +0.2 750,174 - Psyr_0661 0.85 +2.1 750,314 + +1.7 750,314 + +1.2 750,314 + -0.8 750,314 + -0.3 750,314 + -0.3 750,314 + -0.0 750,314 + -1.8 750,314 + +0.5 750,314 + +0.3 750,315 - +1.2 750,315 - -1.1 750,315 - +0.1 750,315 - +1.5 750,315 - -0.2 750,315 - -0.4 750,315 - -1.9 750,315 - +0.6 750,315 - -0.3 750,318 + +0.3 750,318 + +2.3 750,318 + +0.6 750,318 + +1.4 750,318 + +1.0 750,318 + +0.9 750,318 + -0.0 750,319 - +0.4 750,319 - +0.1 750,319 - -1.0 750,319 - +0.5 750,354 + -0.8 750,354 + +1.1 750,354 + -0.5 750,354 + +0.2 750,355 - +0.2 750,355 - -0.3 750,428 + +4.0 750,428 + +1.0 750,428 + -1.0 750,428 + -1.2 750,429 - +1.1 750,429 - -0.8 750,429 - -0.1 750,429 - +2.6 750,429 - -0.1 750,433 - -0.9 750,433 - -0.2 750,740 + Psyr_0662 0.36 -0.4 750,839 - Psyr_0662 0.46 +1.4 750,839 - Psyr_0662 0.46 +2.6 750,944 + Psyr_0662 0.57 +0.4 750,944 + Psyr_0662 0.57 -0.6 750,945 - Psyr_0662 0.57 -0.5 750,945 - Psyr_0662 0.57 +1.5 751,250 + Psyr_0662 0.88 +1.0 751,250 + Psyr_0662 0.88 +0.2 751,250 + Psyr_0662 0.88 -0.4 751,250 + Psyr_0662 0.88 +1.1 751,251 - Psyr_0662 0.88 +0.9 751,251 - Psyr_0662 0.88 +0.1 751,251 - Psyr_0662 0.88 +0.1 751,251 - Psyr_0662 0.88 +0.3 751,251 - Psyr_0662 0.88 +1.0 751,251 - Psyr_0662 0.88 +0.8
Or see this region's nucleotide sequence