Experiment: apoplastic; Pepper
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0479 and Psyr_0480 are separated by 250 nucleotides Psyr_0480 and Psyr_0481 are separated by 282 nucleotides
Psyr_0479: Psyr_0479 - NLP/P60, at 517,592 to 518,269
_0479
Psyr_0480: Psyr_0480 - TM2, at 518,520 to 518,924
_0480
Psyr_0481: Psyr_0481 - dihydroorotase, at 519,207 to 520,478
_0481
Position (kb) 518
519 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 517.654 kb on - strand at 517.743 kb on + strand, within Psyr_0479 at 517.743 kb on + strand, within Psyr_0479 at 517.744 kb on - strand, within Psyr_0479 at 517.896 kb on + strand, within Psyr_0479 at 517.896 kb on + strand, within Psyr_0479 at 517.896 kb on + strand, within Psyr_0479 at 517.896 kb on + strand, within Psyr_0479 at 517.896 kb on + strand, within Psyr_0479 at 517.896 kb on + strand, within Psyr_0479 at 517.896 kb on + strand, within Psyr_0479 at 517.896 kb on + strand, within Psyr_0479 at 517.897 kb on - strand, within Psyr_0479 at 517.897 kb on - strand, within Psyr_0479 at 517.897 kb on - strand, within Psyr_0479 at 517.986 kb on - strand, within Psyr_0479 at 518.167 kb on - strand, within Psyr_0479 at 518.167 kb on - strand, within Psyr_0479 at 518.227 kb on + strand at 518.227 kb on + strand at 518.227 kb on + strand at 518.227 kb on + strand at 518.227 kb on + strand at 518.227 kb on + strand at 518.227 kb on + strand at 518.227 kb on + strand at 518.227 kb on + strand at 518.227 kb on + strand at 518.227 kb on + strand at 518.228 kb on - strand at 518.228 kb on - strand at 518.228 kb on - strand at 518.228 kb on - strand at 518.228 kb on - strand at 518.228 kb on - strand at 518.228 kb on - strand at 518.228 kb on - strand at 518.228 kb on - strand at 518.231 kb on + strand at 518.231 kb on + strand at 518.231 kb on + strand at 518.231 kb on + strand at 518.231 kb on + strand at 518.303 kb on + strand at 518.303 kb on + strand at 518.303 kb on + strand at 518.303 kb on + strand at 518.303 kb on + strand at 518.303 kb on + strand at 518.303 kb on + strand at 518.304 kb on - strand at 518.304 kb on - strand at 518.306 kb on - strand at 518.449 kb on + strand at 518.449 kb on + strand at 518.449 kb on + strand at 518.460 kb on - strand at 518.485 kb on - strand at 518.604 kb on + strand, within Psyr_0480 at 518.605 kb on - strand, within Psyr_0480 at 518.605 kb on - strand, within Psyr_0480 at 518.605 kb on - strand, within Psyr_0480 at 518.605 kb on - strand, within Psyr_0480 at 518.605 kb on - strand, within Psyr_0480 at 518.605 kb on - strand, within Psyr_0480 at 518.605 kb on - strand, within Psyr_0480 at 518.742 kb on + strand, within Psyr_0480 at 518.799 kb on + strand, within Psyr_0480 at 518.799 kb on + strand, within Psyr_0480 at 518.799 kb on + strand, within Psyr_0480 at 518.800 kb on - strand, within Psyr_0480 at 518.800 kb on - strand, within Psyr_0480 at 518.800 kb on - strand, within Psyr_0480 at 518.800 kb on - strand, within Psyr_0480 at 518.800 kb on - strand, within Psyr_0480 at 518.800 kb on - strand, within Psyr_0480 at 518.800 kb on - strand, within Psyr_0480 at 518.868 kb on + strand, within Psyr_0480 at 518.869 kb on - strand, within Psyr_0480 at 518.966 kb on + strand at 518.966 kb on + strand at 518.966 kb on + strand at 518.967 kb on - strand at 518.967 kb on - strand at 518.967 kb on - strand at 518.988 kb on - strand at 519.164 kb on + strand at 519.218 kb on - strand at 519.798 kb on + strand, within Psyr_0481
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Pepper remove 517,654 - -1.9 517,743 + Psyr_0479 0.22 -0.1 517,743 + Psyr_0479 0.22 -0.5 517,744 - Psyr_0479 0.22 -1.9 517,896 + Psyr_0479 0.45 -0.7 517,896 + Psyr_0479 0.45 +0.8 517,896 + Psyr_0479 0.45 +0.8 517,896 + Psyr_0479 0.45 -0.5 517,896 + Psyr_0479 0.45 -1.1 517,896 + Psyr_0479 0.45 +2.0 517,896 + Psyr_0479 0.45 +1.0 517,896 + Psyr_0479 0.45 -1.3 517,897 - Psyr_0479 0.45 -0.3 517,897 - Psyr_0479 0.45 +1.3 517,897 - Psyr_0479 0.45 -2.3 517,986 - Psyr_0479 0.58 -0.1 518,167 - Psyr_0479 0.85 -1.1 518,167 - Psyr_0479 0.85 -0.3 518,227 + -2.3 518,227 + +0.3 518,227 + +0.1 518,227 + +0.1 518,227 + -1.3 518,227 + +1.2 518,227 + +0.2 518,227 + +1.0 518,227 + -0.7 518,227 + +0.3 518,227 + +1.1 518,228 - +1.0 518,228 - +0.6 518,228 - +0.3 518,228 - +0.6 518,228 - -0.2 518,228 - +1.4 518,228 - +1.8 518,228 - -1.1 518,228 - +0.5 518,231 + -0.1 518,231 + +1.1 518,231 + +1.1 518,231 + +0.3 518,231 + -0.9 518,303 + +1.5 518,303 + -0.1 518,303 + +2.1 518,303 + -0.3 518,303 + -1.3 518,303 + -2.9 518,303 + -0.4 518,304 - -2.1 518,304 - +1.0 518,306 - -2.3 518,449 + -0.4 518,449 + +1.0 518,449 + +0.9 518,460 - -2.0 518,485 - -1.9 518,604 + Psyr_0480 0.21 -1.3 518,605 - Psyr_0480 0.21 +0.3 518,605 - Psyr_0480 0.21 +0.8 518,605 - Psyr_0480 0.21 -1.0 518,605 - Psyr_0480 0.21 -0.7 518,605 - Psyr_0480 0.21 +1.0 518,605 - Psyr_0480 0.21 +0.5 518,605 - Psyr_0480 0.21 -1.7 518,742 + Psyr_0480 0.55 -1.2 518,799 + Psyr_0480 0.69 +1.2 518,799 + Psyr_0480 0.69 +0.3 518,799 + Psyr_0480 0.69 -0.2 518,800 - Psyr_0480 0.69 -1.7 518,800 - Psyr_0480 0.69 -0.6 518,800 - Psyr_0480 0.69 +0.9 518,800 - Psyr_0480 0.69 -0.2 518,800 - Psyr_0480 0.69 -0.1 518,800 - Psyr_0480 0.69 +0.3 518,800 - Psyr_0480 0.69 +0.1 518,868 + Psyr_0480 0.86 -0.3 518,869 - Psyr_0480 0.86 +0.9 518,966 + +0.3 518,966 + +0.8 518,966 + -0.1 518,967 - +0.4 518,967 - +0.1 518,967 - -0.3 518,988 - +0.6 519,164 + +0.9 519,218 - +1.0 519,798 + Psyr_0481 0.46 +1.3
Or see this region's nucleotide sequence