Experiment: apoplastic; Pepper
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0381 and Psyr_0382 overlap by 4 nucleotides Psyr_0382 and Psyr_0383 overlap by 4 nucleotides Psyr_0383 and Psyr_0384 are separated by 4 nucleotides Psyr_0384 and Psyr_0385 are separated by 44 nucleotides Psyr_0385 and Psyr_0386 are separated by 2 nucleotides
Psyr_0381: Psyr_0381 - Conserved hypothetical protein 46, at 412,251 to 412,958
_0381
Psyr_0382: Psyr_0382 - Sec-independent periplasmic protein translocase, at 412,955 to 413,755
_0382
Psyr_0383: Psyr_0383 - Twin-arginine translocation protein TatB, at 413,752 to 414,228
_0383
Psyr_0384: Psyr_0384 - Twin-arginine translocation protein TatA/E, at 414,233 to 414,508
_0384
Psyr_0385: Psyr_0385 - phosphoribosyl-ATP pyrophosphatase, at 414,553 to 414,885
_0385
Psyr_0386: Psyr_0386 - phosphoribosyl-AMP cyclohydrolase, at 414,888 to 415,280
_0386
Position (kb) 413
414
415 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 413.158 kb on - strand, within Psyr_0382 at 413.617 kb on - strand, within Psyr_0382 at 413.635 kb on - strand, within Psyr_0382 at 414.028 kb on - strand, within Psyr_0383 at 414.028 kb on - strand, within Psyr_0383 at 414.028 kb on - strand, within Psyr_0383 at 414.128 kb on - strand, within Psyr_0383 at 414.459 kb on - strand, within Psyr_0384 at 414.459 kb on - strand, within Psyr_0384 at 414.693 kb on - strand, within Psyr_0385 at 414.815 kb on + strand, within Psyr_0385 at 414.815 kb on + strand, within Psyr_0385 at 414.815 kb on + strand, within Psyr_0385 at 414.816 kb on - strand, within Psyr_0385 at 414.816 kb on - strand, within Psyr_0385 at 414.816 kb on - strand, within Psyr_0385 at 414.816 kb on - strand, within Psyr_0385 at 414.816 kb on - strand, within Psyr_0385 at 414.877 kb on - strand at 414.877 kb on - strand at 414.877 kb on - strand at 414.877 kb on - strand at 414.877 kb on - strand at 414.905 kb on - strand at 414.905 kb on - strand at 414.905 kb on - strand at 414.909 kb on - strand at 414.909 kb on - strand at 414.909 kb on - strand at 414.909 kb on - strand at 414.909 kb on - strand at 414.909 kb on - strand at 414.909 kb on - strand at 414.909 kb on - strand at 414.937 kb on - strand, within Psyr_0386 at 415.132 kb on + strand, within Psyr_0386 at 415.133 kb on - strand, within Psyr_0386 at 415.133 kb on - strand, within Psyr_0386 at 415.133 kb on - strand, within Psyr_0386 at 415.133 kb on - strand, within Psyr_0386 at 415.133 kb on - strand, within Psyr_0386 at 415.133 kb on - strand, within Psyr_0386 at 415.133 kb on - strand, within Psyr_0386 at 415.133 kb on - strand, within Psyr_0386 at 415.133 kb on - strand, within Psyr_0386
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Pepper remove 413,158 - Psyr_0382 0.25 -1.9 413,617 - Psyr_0382 0.83 +2.1 413,635 - Psyr_0382 0.85 +2.5 414,028 - Psyr_0383 0.58 +2.0 414,028 - Psyr_0383 0.58 -0.3 414,028 - Psyr_0383 0.58 -0.0 414,128 - Psyr_0383 0.79 -0.5 414,459 - Psyr_0384 0.82 -0.3 414,459 - Psyr_0384 0.82 -1.0 414,693 - Psyr_0385 0.42 -3.1 414,815 + Psyr_0385 0.79 -0.1 414,815 + Psyr_0385 0.79 -0.5 414,815 + Psyr_0385 0.79 -0.7 414,816 - Psyr_0385 0.79 -2.8 414,816 - Psyr_0385 0.79 -2.0 414,816 - Psyr_0385 0.79 -2.3 414,816 - Psyr_0385 0.79 -2.3 414,816 - Psyr_0385 0.79 -1.1 414,877 - -3.1 414,877 - -1.9 414,877 - -0.0 414,877 - -1.6 414,877 - -2.0 414,905 - +1.0 414,905 - +0.7 414,905 - -0.0 414,909 - -0.1 414,909 - -0.7 414,909 - -0.9 414,909 - -0.0 414,909 - +1.4 414,909 - +0.0 414,909 - -0.5 414,909 - -0.4 414,937 - Psyr_0386 0.12 +0.8 415,132 + Psyr_0386 0.62 +1.3 415,133 - Psyr_0386 0.62 -2.4 415,133 - Psyr_0386 0.62 -2.8 415,133 - Psyr_0386 0.62 -0.8 415,133 - Psyr_0386 0.62 -3.4 415,133 - Psyr_0386 0.62 -4.3 415,133 - Psyr_0386 0.62 +1.9 415,133 - Psyr_0386 0.62 -2.4 415,133 - Psyr_0386 0.62 -2.1 415,133 - Psyr_0386 0.62 -3.7
Or see this region's nucleotide sequence