Experiment: apoplastic; Pepper
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0169 and Psyr_0170 are separated by 177 nucleotides Psyr_0170 and Psyr_0171 are separated by 167 nucleotides Psyr_0171 and Psyr_0172 are separated by 16 nucleotides Psyr_0172 and Psyr_0173 overlap by 4 nucleotides
Psyr_0169: Psyr_0169 - Hsp33 protein, at 183,940 to 184,842
_0169
Psyr_0170: Psyr_0170 - heat shock protein Hsp15, at 185,020 to 185,427
_0170
Psyr_0171: Psyr_0171 - EAL, at 185,595 to 186,377
_0171
Psyr_0172: Psyr_0172 - Protein of unknown function DUF785, at 186,394 to 186,870
_0172
Psyr_0173: Psyr_0173 - SSU ribosomal protein S6P modification protein, at 186,867 to 187,772
_0173
Position (kb) 185
186
187 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 184.751 kb on + strand, within Psyr_0169 at 184.752 kb on - strand at 184.842 kb on + strand at 184.842 kb on + strand at 184.842 kb on + strand at 184.842 kb on + strand at 184.842 kb on + strand at 184.842 kb on + strand at 184.842 kb on + strand at 184.842 kb on + strand at 184.842 kb on + strand at 184.842 kb on + strand at 184.842 kb on + strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.846 kb on + strand at 184.846 kb on + strand at 184.846 kb on + strand at 184.847 kb on - strand at 184.847 kb on - strand at 184.847 kb on - strand at 184.847 kb on - strand at 184.855 kb on + strand at 184.855 kb on + strand at 184.856 kb on - strand at 184.864 kb on + strand at 184.865 kb on - strand at 184.865 kb on - strand at 184.865 kb on - strand at 184.865 kb on - strand at 184.947 kb on + strand at 184.948 kb on - strand at 184.948 kb on - strand at 184.954 kb on + strand at 184.954 kb on + strand at 184.954 kb on + strand at 184.954 kb on + strand at 184.955 kb on - strand at 184.955 kb on - strand at 184.955 kb on - strand at 184.955 kb on - strand at 184.955 kb on - strand at 185.169 kb on - strand, within Psyr_0170 at 185.225 kb on - strand, within Psyr_0170 at 185.385 kb on + strand, within Psyr_0170 at 185.386 kb on - strand, within Psyr_0170 at 185.445 kb on - strand at 185.527 kb on - strand at 185.554 kb on + strand at 185.566 kb on + strand at 185.682 kb on + strand, within Psyr_0171 at 185.682 kb on + strand, within Psyr_0171 at 185.682 kb on + strand, within Psyr_0171 at 185.683 kb on - strand, within Psyr_0171 at 185.921 kb on + strand, within Psyr_0171 at 186.230 kb on + strand, within Psyr_0171 at 186.230 kb on + strand, within Psyr_0171 at 186.231 kb on - strand, within Psyr_0171 at 186.231 kb on - strand, within Psyr_0171 at 186.257 kb on + strand, within Psyr_0171 at 186.257 kb on + strand, within Psyr_0171 at 186.258 kb on - strand, within Psyr_0171 at 186.258 kb on - strand, within Psyr_0171 at 186.258 kb on - strand, within Psyr_0171 at 186.258 kb on - strand, within Psyr_0171 at 186.258 kb on - strand, within Psyr_0171 at 186.258 kb on - strand, within Psyr_0171 at 186.293 kb on - strand, within Psyr_0171 at 186.309 kb on + strand at 186.309 kb on + strand at 186.309 kb on + strand at 186.310 kb on - strand at 186.310 kb on - strand at 186.382 kb on + strand at 186.382 kb on + strand at 186.382 kb on + strand at 186.383 kb on - strand at 186.383 kb on - strand at 186.639 kb on + strand, within Psyr_0172 at 186.639 kb on + strand, within Psyr_0172 at 186.670 kb on + strand, within Psyr_0172 at 186.670 kb on + strand, within Psyr_0172 at 186.670 kb on + strand, within Psyr_0172 at 186.670 kb on + strand, within Psyr_0172 at 186.671 kb on - strand, within Psyr_0172 at 186.671 kb on - strand, within Psyr_0172 at 186.671 kb on - strand, within Psyr_0172 at 186.671 kb on - strand, within Psyr_0172 at 186.706 kb on - strand, within Psyr_0172 at 186.706 kb on - strand, within Psyr_0172 at 186.817 kb on + strand, within Psyr_0172 at 186.817 kb on + strand, within Psyr_0172 at 186.817 kb on + strand, within Psyr_0172 at 186.817 kb on + strand, within Psyr_0172 at 186.817 kb on + strand, within Psyr_0172 at 186.817 kb on + strand, within Psyr_0172 at 186.817 kb on + strand, within Psyr_0172 at 186.817 kb on + strand, within Psyr_0172 at 186.817 kb on + strand, within Psyr_0172 at 186.817 kb on + strand, within Psyr_0172 at 186.818 kb on - strand, within Psyr_0172 at 186.818 kb on - strand, within Psyr_0172 at 186.818 kb on - strand, within Psyr_0172 at 186.818 kb on - strand, within Psyr_0172 at 186.818 kb on - strand, within Psyr_0172 at 186.818 kb on - strand, within Psyr_0172 at 186.818 kb on - strand, within Psyr_0172 at 186.821 kb on + strand, within Psyr_0172 at 186.821 kb on + strand, within Psyr_0172 at 186.821 kb on + strand, within Psyr_0172 at 186.821 kb on + strand, within Psyr_0172 at 186.821 kb on + strand, within Psyr_0172 at 186.821 kb on + strand, within Psyr_0172 at 186.821 kb on + strand, within Psyr_0172 at 186.822 kb on - strand, within Psyr_0172 at 186.822 kb on - strand, within Psyr_0172 at 186.822 kb on - strand, within Psyr_0172 at 186.822 kb on - strand, within Psyr_0172 at 186.822 kb on - strand, within Psyr_0172 at 186.822 kb on - strand, within Psyr_0172 at 186.822 kb on - strand, within Psyr_0172 at 186.849 kb on + strand at 186.849 kb on + strand at 186.849 kb on + strand at 186.849 kb on + strand at 186.849 kb on + strand at 186.850 kb on - strand at 186.903 kb on + strand at 186.903 kb on + strand at 186.903 kb on + strand at 186.904 kb on - strand at 186.904 kb on - strand at 186.904 kb on - strand at 186.978 kb on + strand, within Psyr_0173 at 186.978 kb on + strand, within Psyr_0173 at 186.978 kb on + strand, within Psyr_0173 at 186.978 kb on + strand, within Psyr_0173 at 186.978 kb on + strand, within Psyr_0173 at 186.978 kb on + strand, within Psyr_0173 at 186.978 kb on + strand, within Psyr_0173 at 186.978 kb on + strand, within Psyr_0173 at 186.978 kb on + strand, within Psyr_0173 at 186.979 kb on - strand, within Psyr_0173 at 186.979 kb on - strand, within Psyr_0173 at 186.979 kb on - strand, within Psyr_0173 at 186.979 kb on - strand, within Psyr_0173 at 186.979 kb on - strand, within Psyr_0173 at 186.979 kb on - strand, within Psyr_0173 at 186.979 kb on - strand, within Psyr_0173 at 186.980 kb on + strand, within Psyr_0173 at 186.980 kb on + strand, within Psyr_0173 at 186.980 kb on + strand, within Psyr_0173 at 186.981 kb on - strand, within Psyr_0173 at 186.981 kb on - strand, within Psyr_0173 at 186.981 kb on - strand, within Psyr_0173 at 186.981 kb on - strand, within Psyr_0173 at 186.981 kb on - strand, within Psyr_0173 at 186.981 kb on - strand, within Psyr_0173 at 186.981 kb on - strand, within Psyr_0173 at 187.081 kb on - strand, within Psyr_0173 at 187.081 kb on - strand, within Psyr_0173
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Pepper remove 184,751 + Psyr_0169 0.90 +0.3 184,752 - +0.5 184,842 + -0.3 184,842 + -0.3 184,842 + -0.5 184,842 + -0.3 184,842 + -0.0 184,842 + -0.9 184,842 + +0.7 184,842 + +0.7 184,842 + +0.8 184,842 + +1.1 184,842 + -0.3 184,843 - +2.3 184,843 - -0.7 184,843 - +1.6 184,843 - +0.7 184,843 - +0.4 184,843 - +1.1 184,843 - +0.3 184,843 - +0.0 184,843 - -0.9 184,843 - -1.4 184,843 - -2.7 184,843 - -0.5 184,843 - -0.2 184,843 - -1.1 184,843 - +1.7 184,843 - +0.8 184,843 - -0.3 184,843 - +0.0 184,843 - -2.8 184,843 - -0.6 184,843 - -0.1 184,843 - -0.5 184,846 + -1.8 184,846 + -2.7 184,846 + -0.6 184,847 - +0.1 184,847 - -0.9 184,847 - -0.1 184,847 - -1.3 184,855 + -1.3 184,855 + -1.8 184,856 - +2.1 184,864 + -0.3 184,865 - +0.8 184,865 - +1.4 184,865 - -1.8 184,865 - -0.2 184,947 + +1.3 184,948 - +1.0 184,948 - -0.2 184,954 + +0.5 184,954 + +0.6 184,954 + -0.7 184,954 + +0.1 184,955 - +1.1 184,955 - -1.3 184,955 - +1.5 184,955 - -0.9 184,955 - -2.3 185,169 - Psyr_0170 0.37 -0.8 185,225 - Psyr_0170 0.50 +1.7 185,385 + Psyr_0170 0.89 -0.2 185,386 - Psyr_0170 0.90 +0.6 185,445 - +0.6 185,527 - +0.4 185,554 + +0.7 185,566 + -0.3 185,682 + Psyr_0171 0.11 -0.9 185,682 + Psyr_0171 0.11 +1.2 185,682 + Psyr_0171 0.11 +0.9 185,683 - Psyr_0171 0.11 +0.8 185,921 + Psyr_0171 0.42 -0.7 186,230 + Psyr_0171 0.81 -0.6 186,230 + Psyr_0171 0.81 -0.8 186,231 - Psyr_0171 0.81 -0.3 186,231 - Psyr_0171 0.81 +0.8 186,257 + Psyr_0171 0.85 -0.2 186,257 + Psyr_0171 0.85 +0.9 186,258 - Psyr_0171 0.85 +1.1 186,258 - Psyr_0171 0.85 +0.5 186,258 - Psyr_0171 0.85 -0.8 186,258 - Psyr_0171 0.85 -1.0 186,258 - Psyr_0171 0.85 -0.5 186,258 - Psyr_0171 0.85 -0.3 186,293 - Psyr_0171 0.89 +0.2 186,309 + -0.3 186,309 + -0.7 186,309 + -0.8 186,310 - -0.5 186,310 - +0.1 186,382 + -0.1 186,382 + +0.4 186,382 + +0.3 186,383 - -0.2 186,383 - +0.5 186,639 + Psyr_0172 0.51 -0.4 186,639 + Psyr_0172 0.51 +0.2 186,670 + Psyr_0172 0.58 +1.3 186,670 + Psyr_0172 0.58 +0.7 186,670 + Psyr_0172 0.58 +0.3 186,670 + Psyr_0172 0.58 -1.9 186,671 - Psyr_0172 0.58 +0.1 186,671 - Psyr_0172 0.58 +1.2 186,671 - Psyr_0172 0.58 -2.3 186,671 - Psyr_0172 0.58 +0.9 186,706 - Psyr_0172 0.65 -0.7 186,706 - Psyr_0172 0.65 +0.1 186,817 + Psyr_0172 0.89 -3.0 186,817 + Psyr_0172 0.89 -0.8 186,817 + Psyr_0172 0.89 +1.0 186,817 + Psyr_0172 0.89 +0.3 186,817 + Psyr_0172 0.89 +0.2 186,817 + Psyr_0172 0.89 -1.3 186,817 + Psyr_0172 0.89 +0.3 186,817 + Psyr_0172 0.89 -1.2 186,817 + Psyr_0172 0.89 +1.2 186,817 + Psyr_0172 0.89 +1.5 186,818 - Psyr_0172 0.89 -0.7 186,818 - Psyr_0172 0.89 -0.0 186,818 - Psyr_0172 0.89 +3.6 186,818 - Psyr_0172 0.89 +1.0 186,818 - Psyr_0172 0.89 -1.2 186,818 - Psyr_0172 0.89 -1.2 186,818 - Psyr_0172 0.89 +2.2 186,821 + Psyr_0172 0.90 -0.0 186,821 + Psyr_0172 0.90 -1.3 186,821 + Psyr_0172 0.90 -0.5 186,821 + Psyr_0172 0.90 +1.0 186,821 + Psyr_0172 0.90 +0.8 186,821 + Psyr_0172 0.90 +2.2 186,821 + Psyr_0172 0.90 +0.3 186,822 - Psyr_0172 0.90 -0.3 186,822 - Psyr_0172 0.90 -1.7 186,822 - Psyr_0172 0.90 +0.7 186,822 - Psyr_0172 0.90 -1.9 186,822 - Psyr_0172 0.90 -0.0 186,822 - Psyr_0172 0.90 -0.5 186,822 - Psyr_0172 0.90 +1.4 186,849 + -0.6 186,849 + +0.6 186,849 + -1.3 186,849 + -0.3 186,849 + -0.2 186,850 - +0.1 186,903 + +0.4 186,903 + -0.1 186,903 + -0.3 186,904 - +0.5 186,904 - +1.2 186,904 - -0.2 186,978 + Psyr_0173 0.12 +1.1 186,978 + Psyr_0173 0.12 -3.0 186,978 + Psyr_0173 0.12 -2.9 186,978 + Psyr_0173 0.12 +0.3 186,978 + Psyr_0173 0.12 -1.4 186,978 + Psyr_0173 0.12 +1.4 186,978 + Psyr_0173 0.12 +0.8 186,978 + Psyr_0173 0.12 +0.7 186,978 + Psyr_0173 0.12 +0.7 186,979 - Psyr_0173 0.12 -0.9 186,979 - Psyr_0173 0.12 +1.2 186,979 - Psyr_0173 0.12 +1.1 186,979 - Psyr_0173 0.12 +0.3 186,979 - Psyr_0173 0.12 -0.9 186,979 - Psyr_0173 0.12 -0.3 186,979 - Psyr_0173 0.12 -0.8 186,980 + Psyr_0173 0.12 -1.3 186,980 + Psyr_0173 0.12 +0.1 186,980 + Psyr_0173 0.12 -0.1 186,981 - Psyr_0173 0.13 +1.5 186,981 - Psyr_0173 0.13 -1.8 186,981 - Psyr_0173 0.13 +0.3 186,981 - Psyr_0173 0.13 +0.6 186,981 - Psyr_0173 0.13 +3.0 186,981 - Psyr_0173 0.13 +0.9 186,981 - Psyr_0173 0.13 +1.1 187,081 - Psyr_0173 0.24 +1.6 187,081 - Psyr_0173 0.24 +0.4
Or see this region's nucleotide sequence