Experiment: apoplastic; Pepper
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0142 and Psyr_0143 are separated by 9 nucleotides Psyr_0143 and Psyr_0144 are separated by 483 nucleotides
Psyr_0142: Psyr_0142 - ABC transporter, at 153,433 to 155,016
_0142
Psyr_0143: Psyr_0143 - chemotaxis sensory transducer, at 155,026 to 156,546
_0143
Psyr_0144: Psyr_0144 - transcriptional regulator, AsnC family, at 157,030 to 157,518
_0144
Position (kb) 155
156
157 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 154.171 kb on + strand, within Psyr_0142 at 154.846 kb on + strand, within Psyr_0142 at 154.846 kb on + strand, within Psyr_0142 at 154.846 kb on + strand, within Psyr_0142 at 154.846 kb on + strand, within Psyr_0142 at 154.846 kb on + strand, within Psyr_0142 at 154.846 kb on + strand, within Psyr_0142 at 154.847 kb on - strand, within Psyr_0142 at 154.847 kb on - strand, within Psyr_0142 at 154.847 kb on - strand, within Psyr_0142 at 154.847 kb on - strand, within Psyr_0142 at 154.972 kb on + strand at 154.972 kb on + strand at 154.973 kb on - strand at 155.028 kb on - strand at 155.028 kb on - strand at 155.227 kb on - strand, within Psyr_0143 at 155.414 kb on - strand, within Psyr_0143 at 155.710 kb on - strand, within Psyr_0143 at 155.855 kb on - strand, within Psyr_0143 at 156.035 kb on + strand, within Psyr_0143 at 156.036 kb on - strand, within Psyr_0143 at 156.065 kb on + strand, within Psyr_0143 at 156.065 kb on + strand, within Psyr_0143 at 156.065 kb on + strand, within Psyr_0143 at 156.065 kb on + strand, within Psyr_0143 at 156.065 kb on + strand, within Psyr_0143 at 156.065 kb on + strand, within Psyr_0143 at 156.065 kb on + strand, within Psyr_0143 at 156.065 kb on + strand, within Psyr_0143 at 156.065 kb on + strand, within Psyr_0143 at 156.065 kb on + strand, within Psyr_0143 at 156.065 kb on + strand, within Psyr_0143 at 156.065 kb on + strand, within Psyr_0143 at 156.065 kb on + strand, within Psyr_0143 at 156.065 kb on + strand, within Psyr_0143 at 156.065 kb on + strand, within Psyr_0143 at 156.065 kb on + strand, within Psyr_0143 at 156.066 kb on - strand, within Psyr_0143 at 156.066 kb on - strand, within Psyr_0143 at 156.066 kb on - strand, within Psyr_0143 at 156.066 kb on - strand, within Psyr_0143 at 156.066 kb on - strand, within Psyr_0143 at 156.066 kb on - strand, within Psyr_0143 at 156.116 kb on + strand, within Psyr_0143 at 156.116 kb on + strand, within Psyr_0143 at 156.116 kb on + strand, within Psyr_0143 at 156.116 kb on + strand, within Psyr_0143 at 156.116 kb on + strand, within Psyr_0143 at 156.116 kb on + strand, within Psyr_0143 at 156.116 kb on + strand, within Psyr_0143 at 156.117 kb on - strand, within Psyr_0143 at 156.117 kb on - strand, within Psyr_0143 at 156.250 kb on + strand, within Psyr_0143 at 156.250 kb on + strand, within Psyr_0143 at 156.250 kb on + strand, within Psyr_0143 at 156.250 kb on + strand, within Psyr_0143 at 156.251 kb on - strand, within Psyr_0143 at 156.307 kb on + strand, within Psyr_0143 at 156.308 kb on - strand, within Psyr_0143 at 156.308 kb on - strand, within Psyr_0143 at 156.308 kb on - strand, within Psyr_0143 at 156.440 kb on + strand at 156.440 kb on + strand at 156.618 kb on - strand at 156.618 kb on - strand at 156.624 kb on - strand at 156.624 kb on - strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.646 kb on + strand at 156.646 kb on + strand at 156.646 kb on + strand at 156.646 kb on + strand at 156.646 kb on + strand at 156.647 kb on - strand at 156.647 kb on - strand at 156.647 kb on - strand at 156.647 kb on - strand at 156.647 kb on - strand at 156.647 kb on - strand at 156.647 kb on - strand at 156.669 kb on + strand at 156.669 kb on + strand at 156.803 kb on + strand at 156.921 kb on + strand at 157.094 kb on + strand, within Psyr_0144 at 157.094 kb on + strand, within Psyr_0144 at 157.094 kb on + strand, within Psyr_0144 at 157.094 kb on + strand, within Psyr_0144 at 157.094 kb on + strand, within Psyr_0144 at 157.095 kb on - strand, within Psyr_0144 at 157.095 kb on - strand, within Psyr_0144 at 157.095 kb on - strand, within Psyr_0144 at 157.103 kb on + strand, within Psyr_0144 at 157.103 kb on + strand, within Psyr_0144 at 157.103 kb on + strand, within Psyr_0144 at 157.103 kb on + strand, within Psyr_0144 at 157.104 kb on - strand, within Psyr_0144 at 157.191 kb on - strand, within Psyr_0144 at 157.338 kb on + strand, within Psyr_0144 at 157.338 kb on + strand, within Psyr_0144 at 157.339 kb on - strand, within Psyr_0144 at 157.339 kb on - strand, within Psyr_0144 at 157.339 kb on - strand, within Psyr_0144 at 157.339 kb on - strand, within Psyr_0144 at 157.352 kb on + strand, within Psyr_0144 at 157.352 kb on + strand, within Psyr_0144 at 157.352 kb on + strand, within Psyr_0144 at 157.352 kb on + strand, within Psyr_0144 at 157.353 kb on - strand, within Psyr_0144 at 157.353 kb on - strand, within Psyr_0144 at 157.353 kb on - strand, within Psyr_0144 at 157.353 kb on - strand, within Psyr_0144 at 157.364 kb on + strand, within Psyr_0144 at 157.365 kb on - strand, within Psyr_0144 at 157.471 kb on + strand at 157.472 kb on - strand at 157.479 kb on + strand at 157.480 kb on - strand at 157.482 kb on - strand at 157.486 kb on - strand at 157.519 kb on + strand at 157.519 kb on + strand at 157.523 kb on + strand at 157.523 kb on + strand at 157.523 kb on + strand at 157.523 kb on + strand at 157.523 kb on + strand at 157.523 kb on + strand at 157.524 kb on - strand at 157.524 kb on - strand at 157.524 kb on - strand at 157.524 kb on - strand at 157.524 kb on - strand at 157.532 kb on + strand at 157.532 kb on + strand at 157.532 kb on + strand at 157.532 kb on + strand at 157.532 kb on + strand at 157.532 kb on + strand at 157.532 kb on + strand at 157.532 kb on + strand at 157.532 kb on + strand at 157.532 kb on + strand at 157.532 kb on + strand at 157.532 kb on + strand at 157.532 kb on + strand at 157.532 kb on + strand at 157.532 kb on + strand at 157.532 kb on + strand at 157.532 kb on + strand at 157.532 kb on + strand at 157.532 kb on + strand at 157.532 kb on + strand at 157.532 kb on + strand at 157.532 kb on + strand at 157.532 kb on + strand at 157.532 kb on + strand at 157.532 kb on + strand at 157.533 kb on - strand at 157.533 kb on - strand at 157.533 kb on - strand at 157.533 kb on - strand at 157.533 kb on - strand at 157.533 kb on - strand at 157.533 kb on - strand at 157.533 kb on - strand at 157.533 kb on - strand at 157.533 kb on - strand at 157.533 kb on - strand at 157.533 kb on - strand at 157.533 kb on - strand at 157.533 kb on - strand at 157.533 kb on - strand at 157.533 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Pepper remove 154,171 + Psyr_0142 0.47 -1.9 154,846 + Psyr_0142 0.89 -2.7 154,846 + Psyr_0142 0.89 +1.4 154,846 + Psyr_0142 0.89 +0.3 154,846 + Psyr_0142 0.89 +0.7 154,846 + Psyr_0142 0.89 +0.9 154,846 + Psyr_0142 0.89 +0.3 154,847 - Psyr_0142 0.89 +0.1 154,847 - Psyr_0142 0.89 -0.3 154,847 - Psyr_0142 0.89 -0.1 154,847 - Psyr_0142 0.89 +0.3 154,972 + -2.5 154,972 + +0.1 154,973 - +0.1 155,028 - +0.7 155,028 - -0.5 155,227 - Psyr_0143 0.13 +1.5 155,414 - Psyr_0143 0.26 -1.5 155,710 - Psyr_0143 0.45 -0.5 155,855 - Psyr_0143 0.55 +0.6 156,035 + Psyr_0143 0.66 -0.8 156,036 - Psyr_0143 0.66 +0.1 156,065 + Psyr_0143 0.68 -0.8 156,065 + Psyr_0143 0.68 -1.0 156,065 + Psyr_0143 0.68 +0.1 156,065 + Psyr_0143 0.68 +0.4 156,065 + Psyr_0143 0.68 -2.5 156,065 + Psyr_0143 0.68 -0.5 156,065 + Psyr_0143 0.68 +1.2 156,065 + Psyr_0143 0.68 +0.1 156,065 + Psyr_0143 0.68 -0.8 156,065 + Psyr_0143 0.68 -0.8 156,065 + Psyr_0143 0.68 -0.8 156,065 + Psyr_0143 0.68 -0.1 156,065 + Psyr_0143 0.68 -2.1 156,065 + Psyr_0143 0.68 -0.8 156,065 + Psyr_0143 0.68 -0.0 156,065 + Psyr_0143 0.68 +0.7 156,066 - Psyr_0143 0.68 +0.9 156,066 - Psyr_0143 0.68 -0.3 156,066 - Psyr_0143 0.68 -0.1 156,066 - Psyr_0143 0.68 -0.5 156,066 - Psyr_0143 0.68 +0.2 156,066 - Psyr_0143 0.68 +0.2 156,116 + Psyr_0143 0.72 -1.7 156,116 + Psyr_0143 0.72 -0.4 156,116 + Psyr_0143 0.72 -0.0 156,116 + Psyr_0143 0.72 +0.2 156,116 + Psyr_0143 0.72 +0.4 156,116 + Psyr_0143 0.72 -0.5 156,116 + Psyr_0143 0.72 +0.3 156,117 - Psyr_0143 0.72 +0.7 156,117 - Psyr_0143 0.72 +0.5 156,250 + Psyr_0143 0.80 -0.1 156,250 + Psyr_0143 0.80 -1.9 156,250 + Psyr_0143 0.80 +0.3 156,250 + Psyr_0143 0.80 -0.7 156,251 - Psyr_0143 0.81 +0.4 156,307 + Psyr_0143 0.84 +0.1 156,308 - Psyr_0143 0.84 +1.8 156,308 - Psyr_0143 0.84 -0.3 156,308 - Psyr_0143 0.84 +0.6 156,440 + +0.7 156,440 + -2.4 156,618 - -2.3 156,618 - +0.3 156,624 - -0.4 156,624 - +2.2 156,642 + -1.3 156,642 + -2.4 156,642 + -2.4 156,642 + +0.3 156,642 + -0.7 156,642 + +0.9 156,642 + +1.9 156,642 + -0.3 156,642 + +0.1 156,642 + +0.2 156,642 + -1.3 156,642 + +1.2 156,642 + +1.3 156,642 + -1.4 156,642 + -0.8 156,642 + -1.0 156,642 + +0.3 156,642 + -0.7 156,642 + -0.3 156,642 + +2.4 156,642 + +0.7 156,643 - -0.3 156,643 - +0.2 156,643 - -1.6 156,643 - -0.3 156,643 - +0.1 156,643 - +1.6 156,643 - -0.3 156,643 - -0.4 156,643 - +1.0 156,643 - +0.2 156,643 - +0.2 156,643 - +0.2 156,643 - +0.7 156,643 - +0.5 156,643 - +0.3 156,643 - -0.7 156,643 - -0.7 156,646 + -1.9 156,646 + -2.4 156,646 + +0.8 156,646 + +0.2 156,646 + -1.9 156,647 - +1.3 156,647 - +0.6 156,647 - +1.8 156,647 - +3.0 156,647 - +0.3 156,647 - +2.4 156,647 - +0.4 156,669 + +0.3 156,669 + -0.2 156,803 + +1.5 156,921 + +0.3 157,094 + Psyr_0144 0.13 -0.1 157,094 + Psyr_0144 0.13 +0.9 157,094 + Psyr_0144 0.13 -0.3 157,094 + Psyr_0144 0.13 +0.1 157,094 + Psyr_0144 0.13 +0.4 157,095 - Psyr_0144 0.13 +0.1 157,095 - Psyr_0144 0.13 -0.5 157,095 - Psyr_0144 0.13 -3.4 157,103 + Psyr_0144 0.15 -0.5 157,103 + Psyr_0144 0.15 -0.1 157,103 + Psyr_0144 0.15 +1.7 157,103 + Psyr_0144 0.15 -0.8 157,104 - Psyr_0144 0.15 -1.0 157,191 - Psyr_0144 0.33 +0.6 157,338 + Psyr_0144 0.63 -0.3 157,338 + Psyr_0144 0.63 -1.4 157,339 - Psyr_0144 0.63 +0.5 157,339 - Psyr_0144 0.63 +0.7 157,339 - Psyr_0144 0.63 +0.8 157,339 - Psyr_0144 0.63 +0.7 157,352 + Psyr_0144 0.66 +0.3 157,352 + Psyr_0144 0.66 -0.3 157,352 + Psyr_0144 0.66 +0.6 157,352 + Psyr_0144 0.66 +0.9 157,353 - Psyr_0144 0.66 -0.9 157,353 - Psyr_0144 0.66 -1.7 157,353 - Psyr_0144 0.66 -0.2 157,353 - Psyr_0144 0.66 +1.0 157,364 + Psyr_0144 0.68 +1.1 157,365 - Psyr_0144 0.69 -0.1 157,471 + -2.0 157,472 - +1.6 157,479 + +0.6 157,480 - -1.9 157,482 - +1.6 157,486 - +0.3 157,519 + +0.1 157,519 + -0.3 157,523 + -0.9 157,523 + +0.6 157,523 + +1.2 157,523 + +1.9 157,523 + -0.4 157,523 + +1.5 157,524 - +1.2 157,524 - -0.0 157,524 - +0.6 157,524 - -1.1 157,524 - +0.6 157,532 + +0.8 157,532 + +2.2 157,532 + -0.5 157,532 + +0.4 157,532 + +0.6 157,532 + -0.6 157,532 + +0.6 157,532 + +0.3 157,532 + +0.3 157,532 + -0.7 157,532 + +0.2 157,532 + +0.1 157,532 + +0.8 157,532 + +0.3 157,532 + +0.5 157,532 + -0.2 157,532 + +0.9 157,532 + -0.1 157,532 + +0.7 157,532 + +1.7 157,532 + +0.4 157,532 + -0.5 157,532 + -0.8 157,532 + +0.1 157,532 + -2.8 157,533 - +0.4 157,533 - +0.3 157,533 - +0.7 157,533 - -0.9 157,533 - -0.1 157,533 - +0.2 157,533 - -0.4 157,533 - -0.1 157,533 - -0.3 157,533 - -1.0 157,533 - -0.7 157,533 - +0.0 157,533 - +2.8 157,533 - +0.8 157,533 - -1.5 157,533 - -1.0
Or see this region's nucleotide sequence