Experiment: apoplastic; Pepper
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0075 and Psyr_0076 are separated by 51 nucleotides Psyr_0076 and Psyr_0077 are separated by 591 nucleotides
Psyr_0075: Psyr_0075 - ATP-dependent DNA helicase Rep, at 79,502 to 81,511
_0075
Psyr_0076: Psyr_0076 - Xanthine phosphoribosyltransferase, at 81,563 to 82,132
_0076
Psyr_0077: Psyr_0077 - sigma54 specific transcriptional regulator, Fis family, at 82,724 to 84,043
_0077
Position (kb) 81
82
83 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 81.521 kb on + strand at 81.532 kb on + strand at 81.532 kb on + strand at 81.532 kb on + strand at 81.533 kb on - strand at 81.560 kb on + strand at 81.561 kb on - strand at 81.561 kb on - strand at 81.561 kb on - strand at 81.561 kb on - strand at 81.561 kb on - strand at 81.561 kb on - strand at 81.603 kb on + strand at 81.603 kb on + strand at 81.603 kb on + strand at 81.603 kb on + strand at 81.604 kb on - strand at 81.604 kb on - strand at 81.604 kb on - strand at 81.851 kb on + strand, within Psyr_0076 at 81.851 kb on + strand, within Psyr_0076 at 81.851 kb on + strand, within Psyr_0076 at 81.852 kb on - strand, within Psyr_0076 at 81.852 kb on - strand, within Psyr_0076 at 81.852 kb on - strand, within Psyr_0076 at 82.130 kb on + strand at 82.130 kb on + strand at 82.130 kb on + strand at 82.130 kb on + strand at 82.130 kb on + strand at 82.131 kb on - strand at 82.131 kb on - strand at 82.131 kb on - strand at 82.131 kb on - strand at 82.192 kb on + strand at 82.193 kb on - strand at 82.193 kb on - strand at 82.193 kb on - strand at 82.421 kb on + strand at 82.421 kb on + strand at 82.425 kb on + strand at 82.425 kb on + strand at 82.425 kb on + strand at 82.425 kb on + strand at 82.425 kb on + strand at 82.425 kb on + strand at 82.426 kb on - strand at 82.426 kb on - strand at 82.426 kb on - strand at 82.426 kb on - strand at 82.426 kb on - strand at 82.535 kb on + strand at 82.649 kb on + strand at 82.649 kb on + strand at 82.649 kb on + strand at 82.711 kb on + strand at 82.867 kb on - strand, within Psyr_0077 at 82.898 kb on + strand, within Psyr_0077 at 82.942 kb on + strand, within Psyr_0077 at 82.946 kb on + strand, within Psyr_0077 at 82.947 kb on - strand, within Psyr_0077 at 82.947 kb on - strand, within Psyr_0077 at 82.947 kb on - strand, within Psyr_0077 at 82.947 kb on - strand, within Psyr_0077 at 82.964 kb on + strand, within Psyr_0077 at 82.964 kb on + strand, within Psyr_0077 at 82.964 kb on + strand, within Psyr_0077 at 82.965 kb on - strand, within Psyr_0077 at 82.965 kb on - strand, within Psyr_0077 at 82.965 kb on - strand, within Psyr_0077 at 82.965 kb on - strand, within Psyr_0077 at 82.965 kb on - strand, within Psyr_0077 at 82.965 kb on - strand, within Psyr_0077 at 82.965 kb on - strand, within Psyr_0077 at 82.965 kb on - strand, within Psyr_0077 at 83.001 kb on + strand, within Psyr_0077 at 83.001 kb on + strand, within Psyr_0077 at 83.002 kb on - strand, within Psyr_0077 at 83.002 kb on - strand, within Psyr_0077
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Pepper remove 81,521 + +0.0 81,532 + +0.6 81,532 + -0.3 81,532 + -0.0 81,533 - -0.2 81,560 + -0.4 81,561 - +1.0 81,561 - -1.3 81,561 - -1.1 81,561 - +0.6 81,561 - +0.7 81,561 - +1.5 81,603 + -2.2 81,603 + -0.5 81,603 + +0.2 81,603 + -1.3 81,604 - +0.1 81,604 - -0.6 81,604 - -0.5 81,851 + Psyr_0076 0.51 -1.9 81,851 + Psyr_0076 0.51 +0.2 81,851 + Psyr_0076 0.51 +0.2 81,852 - Psyr_0076 0.51 -1.1 81,852 - Psyr_0076 0.51 -0.4 81,852 - Psyr_0076 0.51 -0.8 82,130 + -2.0 82,130 + +0.6 82,130 + +2.4 82,130 + +0.9 82,130 + -0.6 82,131 - +0.6 82,131 - -1.6 82,131 - +0.3 82,131 - +1.5 82,192 + -1.3 82,193 - +0.9 82,193 - +1.2 82,193 - -1.3 82,421 + +0.7 82,421 + -0.8 82,425 + -0.3 82,425 + +1.3 82,425 + +1.9 82,425 + +1.0 82,425 + -1.6 82,425 + +2.0 82,426 - +0.8 82,426 - +1.4 82,426 - +0.1 82,426 - +0.3 82,426 - +0.7 82,535 + -3.6 82,649 + +0.9 82,649 + +0.4 82,649 + +0.9 82,711 + +0.4 82,867 - Psyr_0077 0.11 -0.1 82,898 + Psyr_0077 0.13 +1.8 82,942 + Psyr_0077 0.17 -0.7 82,946 + Psyr_0077 0.17 -0.7 82,947 - Psyr_0077 0.17 +0.6 82,947 - Psyr_0077 0.17 -0.0 82,947 - Psyr_0077 0.17 -0.8 82,947 - Psyr_0077 0.17 +1.3 82,964 + Psyr_0077 0.18 +0.1 82,964 + Psyr_0077 0.18 -0.3 82,964 + Psyr_0077 0.18 -0.4 82,965 - Psyr_0077 0.18 -1.5 82,965 - Psyr_0077 0.18 -0.5 82,965 - Psyr_0077 0.18 +0.9 82,965 - Psyr_0077 0.18 +0.0 82,965 - Psyr_0077 0.18 +2.0 82,965 - Psyr_0077 0.18 +1.9 82,965 - Psyr_0077 0.18 +2.3 82,965 - Psyr_0077 0.18 +0.7 83,001 + Psyr_0077 0.21 +1.1 83,001 + Psyr_0077 0.21 -0.1 83,002 - Psyr_0077 0.21 -0.4 83,002 - Psyr_0077 0.21 -0.9
Or see this region's nucleotide sequence