Experiment: Sisomicin 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_90 and Pf6N2E2_91 are separated by 141 nucleotides
Pf6N2E2_90 - Lipoprotein, putative, at 135,485 to 136,639
_90
Pf6N2E2_91 - Transcriptional regulator, LysR family, at 136,781 to 137,665
_91
Position (kb) 135
136
137 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 134.583 kb on + strand at 134.583 kb on + strand at 134.583 kb on + strand at 134.584 kb on - strand at 134.587 kb on + strand at 134.587 kb on + strand at 134.588 kb on - strand at 134.588 kb on - strand at 134.620 kb on - strand at 134.679 kb on + strand at 134.679 kb on + strand at 134.680 kb on - strand at 134.680 kb on - strand at 134.695 kb on - strand at 134.727 kb on + strand at 134.775 kb on + strand at 134.775 kb on + strand at 134.775 kb on + strand at 134.776 kb on - strand at 134.776 kb on - strand at 134.776 kb on - strand at 134.908 kb on + strand at 134.908 kb on + strand at 134.957 kb on - strand at 135.009 kb on - strand at 135.020 kb on - strand at 135.020 kb on - strand at 135.132 kb on - strand at 135.132 kb on - strand at 135.132 kb on - strand at 135.132 kb on - strand at 135.144 kb on - strand at 135.144 kb on - strand at 135.148 kb on - strand at 135.408 kb on - strand at 135.688 kb on - strand, within Pf6N2E2_90 at 135.691 kb on - strand, within Pf6N2E2_90 at 135.725 kb on + strand, within Pf6N2E2_90 at 135.940 kb on - strand, within Pf6N2E2_90 at 136.015 kb on + strand, within Pf6N2E2_90 at 136.264 kb on + strand, within Pf6N2E2_90 at 136.352 kb on + strand, within Pf6N2E2_90 at 136.352 kb on + strand, within Pf6N2E2_90 at 136.369 kb on + strand, within Pf6N2E2_90 at 136.397 kb on + strand, within Pf6N2E2_90 at 136.547 kb on - strand at 136.567 kb on + strand at 136.568 kb on - strand at 136.613 kb on + strand at 136.613 kb on + strand at 136.679 kb on + strand at 136.679 kb on + strand at 136.679 kb on + strand at 136.679 kb on + strand at 136.680 kb on - strand at 136.680 kb on - strand at 136.865 kb on - strand at 136.865 kb on - strand at 136.866 kb on + strand at 137.163 kb on + strand, within Pf6N2E2_91 at 137.164 kb on - strand, within Pf6N2E2_91 at 137.285 kb on - strand, within Pf6N2E2_91 at 137.448 kb on + strand, within Pf6N2E2_91 at 137.448 kb on + strand, within Pf6N2E2_91 at 137.449 kb on - strand, within Pf6N2E2_91 at 137.454 kb on + strand, within Pf6N2E2_91 at 137.454 kb on + strand, within Pf6N2E2_91 at 137.454 kb on + strand, within Pf6N2E2_91 at 137.454 kb on + strand, within Pf6N2E2_91 at 137.454 kb on + strand, within Pf6N2E2_91 at 137.454 kb on + strand, within Pf6N2E2_91 at 137.454 kb on + strand, within Pf6N2E2_91 at 137.454 kb on + strand, within Pf6N2E2_91 at 137.454 kb on + strand, within Pf6N2E2_91 at 137.455 kb on - strand, within Pf6N2E2_91 at 137.455 kb on - strand, within Pf6N2E2_91 at 137.455 kb on - strand, within Pf6N2E2_91 at 137.455 kb on - strand, within Pf6N2E2_91 at 137.455 kb on - strand, within Pf6N2E2_91 at 137.455 kb on - strand, within Pf6N2E2_91 at 137.455 kb on - strand, within Pf6N2E2_91 at 137.455 kb on - strand, within Pf6N2E2_91 at 137.455 kb on - strand, within Pf6N2E2_91
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.0008 mg/ml remove 134,583 + +1.3 134,583 + -1.2 134,583 + +0.5 134,584 - +1.3 134,587 + +0.4 134,587 + +1.0 134,588 - +0.4 134,588 - -1.2 134,620 - -0.4 134,679 + +0.4 134,679 + +0.1 134,680 - +0.3 134,680 - +0.2 134,695 - -1.3 134,727 + +0.1 134,775 + -0.2 134,775 + -0.3 134,775 + -0.1 134,776 - -0.7 134,776 - +2.6 134,776 - +0.7 134,908 + +0.4 134,908 + +0.6 134,957 - -0.3 135,009 - -0.3 135,020 - +0.2 135,020 - -0.9 135,132 - -0.6 135,132 - +0.7 135,132 - -0.8 135,132 - -0.4 135,144 - -1.5 135,144 - +1.7 135,148 - -0.3 135,408 - -0.6 135,688 - Pf6N2E2_90 0.18 +0.2 135,691 - Pf6N2E2_90 0.18 -1.3 135,725 + Pf6N2E2_90 0.21 +0.8 135,940 - Pf6N2E2_90 0.39 -0.6 136,015 + Pf6N2E2_90 0.46 -0.7 136,264 + Pf6N2E2_90 0.67 -0.7 136,352 + Pf6N2E2_90 0.75 -0.8 136,352 + Pf6N2E2_90 0.75 -1.6 136,369 + Pf6N2E2_90 0.77 -1.2 136,397 + Pf6N2E2_90 0.79 +0.6 136,547 - +0.8 136,567 + -2.9 136,568 - -0.2 136,613 + -1.0 136,613 + -2.2 136,679 + -1.2 136,679 + -0.2 136,679 + -1.1 136,679 + -1.1 136,680 - -0.5 136,680 - +0.7 136,865 - +1.3 136,865 - +1.3 136,866 + -0.3 137,163 + Pf6N2E2_91 0.43 -1.1 137,164 - Pf6N2E2_91 0.43 -0.9 137,285 - Pf6N2E2_91 0.57 -2.2 137,448 + Pf6N2E2_91 0.75 +0.3 137,448 + Pf6N2E2_91 0.75 -0.6 137,449 - Pf6N2E2_91 0.75 -0.1 137,454 + Pf6N2E2_91 0.76 +0.1 137,454 + Pf6N2E2_91 0.76 -0.4 137,454 + Pf6N2E2_91 0.76 +0.6 137,454 + Pf6N2E2_91 0.76 -0.4 137,454 + Pf6N2E2_91 0.76 -1.1 137,454 + Pf6N2E2_91 0.76 -0.5 137,454 + Pf6N2E2_91 0.76 -0.3 137,454 + Pf6N2E2_91 0.76 -1.2 137,454 + Pf6N2E2_91 0.76 +0.7 137,455 - Pf6N2E2_91 0.76 -0.0 137,455 - Pf6N2E2_91 0.76 -1.8 137,455 - Pf6N2E2_91 0.76 +0.2 137,455 - Pf6N2E2_91 0.76 +0.1 137,455 - Pf6N2E2_91 0.76 +0.2 137,455 - Pf6N2E2_91 0.76 +0.2 137,455 - Pf6N2E2_91 0.76 -0.4 137,455 - Pf6N2E2_91 0.76 -1.3 137,455 - Pf6N2E2_91 0.76 +0.8
Or see this region's nucleotide sequence