Experiment: D-Glucose (C) with ammonium chloride; anaerobic; 8 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS04555 and HSERO_RS04560 are separated by 143 nucleotides HSERO_RS04560 and HSERO_RS04565 overlap by 1 nucleotides
HSERO_RS04555: HSERO_RS04555 - capsid protein, at 994,790 to 995,632
_RS04555
HSERO_RS04560: HSERO_RS04560 - terminase, at 995,776 to 997,557
_RS04560
HSERO_RS04565: HSERO_RS04565 - bacteriophage capsid portal protein, at 997,557 to 998,609
_RS04565
Position (kb) 995
996
997
998 Strain fitness (log2 ratio) -1
0
1
2 at 994.867 kb on + strand at 994.931 kb on + strand, within HSERO_RS04555 at 995.194 kb on - strand, within HSERO_RS04555 at 995.263 kb on + strand, within HSERO_RS04555 at 995.324 kb on + strand, within HSERO_RS04555 at 995.325 kb on + strand, within HSERO_RS04555 at 995.446 kb on - strand, within HSERO_RS04555 at 995.492 kb on - strand, within HSERO_RS04555 at 995.565 kb on - strand at 995.708 kb on + strand at 995.975 kb on + strand, within HSERO_RS04560 at 996.063 kb on + strand, within HSERO_RS04560 at 996.189 kb on + strand, within HSERO_RS04560 at 996.212 kb on - strand, within HSERO_RS04560 at 996.350 kb on - strand, within HSERO_RS04560 at 996.448 kb on - strand, within HSERO_RS04560 at 996.455 kb on - strand, within HSERO_RS04560 at 996.471 kb on + strand, within HSERO_RS04560 at 996.517 kb on + strand, within HSERO_RS04560 at 996.522 kb on + strand, within HSERO_RS04560 at 996.525 kb on - strand, within HSERO_RS04560 at 996.525 kb on - strand, within HSERO_RS04560 at 996.525 kb on - strand, within HSERO_RS04560 at 996.607 kb on - strand, within HSERO_RS04560 at 996.643 kb on + strand, within HSERO_RS04560 at 996.746 kb on - strand, within HSERO_RS04560 at 996.771 kb on + strand, within HSERO_RS04560 at 996.779 kb on - strand, within HSERO_RS04560 at 997.309 kb on + strand, within HSERO_RS04560 at 997.317 kb on - strand, within HSERO_RS04560 at 997.419 kb on - strand at 997.445 kb on + strand at 997.507 kb on - strand at 997.522 kb on + strand at 997.592 kb on - strand at 997.646 kb on - strand at 997.808 kb on + strand, within HSERO_RS04565 at 997.868 kb on - strand, within HSERO_RS04565 at 997.909 kb on - strand, within HSERO_RS04565 at 998.007 kb on + strand, within HSERO_RS04565 at 998.065 kb on + strand, within HSERO_RS04565 at 998.093 kb on - strand, within HSERO_RS04565 at 998.148 kb on + strand, within HSERO_RS04565 at 998.332 kb on + strand, within HSERO_RS04565 at 998.445 kb on - strand, within HSERO_RS04565
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) with ammonium chloride; anaerobic; 8 days remove 994,867 + +0.2 994,931 + HSERO_RS04555 0.17 -1.1 995,194 - HSERO_RS04555 0.48 +0.9 995,263 + HSERO_RS04555 0.56 +0.1 995,324 + HSERO_RS04555 0.63 +0.1 995,325 + HSERO_RS04555 0.63 -1.2 995,446 - HSERO_RS04555 0.78 -0.2 995,492 - HSERO_RS04555 0.83 -0.1 995,565 - +0.2 995,708 + +0.6 995,975 + HSERO_RS04560 0.11 -0.0 996,063 + HSERO_RS04560 0.16 +1.0 996,189 + HSERO_RS04560 0.23 +0.4 996,212 - HSERO_RS04560 0.24 +0.4 996,350 - HSERO_RS04560 0.32 +0.2 996,448 - HSERO_RS04560 0.38 +0.3 996,455 - HSERO_RS04560 0.38 +0.1 996,471 + HSERO_RS04560 0.39 +0.5 996,517 + HSERO_RS04560 0.42 -0.4 996,522 + HSERO_RS04560 0.42 +0.7 996,525 - HSERO_RS04560 0.42 -0.4 996,525 - HSERO_RS04560 0.42 -0.2 996,525 - HSERO_RS04560 0.42 -0.3 996,607 - HSERO_RS04560 0.47 +0.1 996,643 + HSERO_RS04560 0.49 +1.0 996,746 - HSERO_RS04560 0.54 +0.0 996,771 + HSERO_RS04560 0.56 +0.7 996,779 - HSERO_RS04560 0.56 -0.1 997,309 + HSERO_RS04560 0.86 +0.6 997,317 - HSERO_RS04560 0.86 -0.0 997,419 - +0.4 997,445 + +1.9 997,507 - -0.2 997,522 + +1.5 997,592 - +0.0 997,646 - +0.0 997,808 + HSERO_RS04565 0.24 +0.2 997,868 - HSERO_RS04565 0.30 +0.4 997,909 - HSERO_RS04565 0.33 +0.3 998,007 + HSERO_RS04565 0.43 +0.4 998,065 + HSERO_RS04565 0.48 +1.0 998,093 - HSERO_RS04565 0.51 +0.0 998,148 + HSERO_RS04565 0.56 +0.5 998,332 + HSERO_RS04565 0.74 +0.8 998,445 - HSERO_RS04565 0.84 +0.2
Or see this region's nucleotide sequence