Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03647

Experiment: PYE 0.5x 25C survival rep2 28 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 0.5x 25C survival rep2 28 days
3,804,616	-		CCNA_03646	0.18	-2.1
3,804,619	+		CCNA_03646	0.18	-0.0
3,804,636	+		CCNA_03646	0.20	-2.0
3,804,646	+		CCNA_03646	0.21	+0.0
3,804,646	+		CCNA_03646	0.21	-2.7
3,804,654	-		CCNA_03646	0.21	-2.1
3,804,670	+		CCNA_03646	0.23	-0.8
3,804,673	-		CCNA_03646	0.23	-0.2
3,804,691	-		CCNA_03646	0.25	-0.6
3,804,702	-		CCNA_03646	0.26	-0.9
3,804,752	-		CCNA_03646	0.30	+0.5
3,804,752	-		CCNA_03646	0.30	-2.5
3,804,786	+		CCNA_03646	0.33	-0.0
3,804,794	-		CCNA_03646	0.34	-2.1
3,804,794	-		CCNA_03646	0.34	+2.0
3,804,807	-		CCNA_03646	0.35	+0.0
3,804,814	+		CCNA_03646	0.36	+1.7
3,804,814	+		CCNA_03646	0.36	+2.0
3,804,814	+		CCNA_03646	0.36	-0.8
3,804,822	-		CCNA_03646	0.36	-0.7
3,804,822	-		CCNA_03646	0.36	+1.0
3,804,857	-		CCNA_03646	0.40	+0.7
3,804,915	+		CCNA_03646	0.45	-0.8
3,804,935	-		CCNA_03646	0.47	-0.8
3,804,935	-		CCNA_03646	0.47	-0.3
3,804,935	-		CCNA_03646	0.47	-1.3
3,804,985	+		CCNA_03646	0.51	-0.0
3,804,993	-		CCNA_03646	0.52	+2.5
3,805,022	+		CCNA_03646	0.54	-0.0
3,805,036	-		CCNA_03646	0.56	+2.0
3,805,037	-		CCNA_03646	0.56	-1.1
3,805,097	+		CCNA_03646	0.61	-1.2
3,805,105	-		CCNA_03646	0.62	+1.2
3,805,116	+		CCNA_03646	0.63	-0.0
3,805,119	-		CCNA_03646	0.63	-0.1
3,805,171	+		CCNA_03646	0.68	-2.4
3,805,171	+		CCNA_03646	0.68	+2.0
3,805,171	+		CCNA_03646	0.68	-1.0
3,805,171	+		CCNA_03646	0.68	-2.4
3,805,171	+		CCNA_03646	0.68	+1.6
3,805,171	+		CCNA_03646	0.68	-1.3
3,805,171	+		CCNA_03646	0.68	-2.5
3,805,171	+		CCNA_03646	0.68	-0.6
3,805,171	+		CCNA_03646	0.68	-1.8
3,805,171	+		CCNA_03646	0.68	-3.0
3,805,171	+		CCNA_03646	0.68	-0.9
3,805,171	+		CCNA_03646	0.68	+2.0
3,805,171	+		CCNA_03646	0.68	-1.3
3,805,179	-		CCNA_03646	0.68	+0.2
3,805,179	-		CCNA_03646	0.68	-0.3
3,805,179	-		CCNA_03646	0.68	+0.1
3,805,179	-		CCNA_03646	0.68	+0.4
3,805,179	-		CCNA_03646	0.68	-2.4
3,805,179	-		CCNA_03646	0.68	+0.4
3,805,179	-		CCNA_03646	0.68	-1.6
3,805,181	+		CCNA_03646	0.69	-0.0
3,805,189	-		CCNA_03646	0.69	-2.5
3,805,305	+		CCNA_03646	0.80	-1.0
3,805,305	+		CCNA_03646	0.80	-1.6
3,805,313	-		CCNA_03646	0.80	-0.5
3,805,326	-		CCNA_03646	0.82	-0.8
3,805,352	-		CCNA_03646	0.84	-1.5
3,805,377	-		CCNA_03646	0.86	+3.6
3,805,389	-		CCNA_03646	0.87	-0.1
3,805,426	+				-0.3
3,805,480	+				-1.7
3,805,482	-				+0.2
3,805,498	-				+1.4
3,805,535	+				-2.7
3,805,543	-				+0.8
3,805,573	-				-1.8
3,805,592	-				-2.3
3,805,604	+				-0.5
3,805,648	-				+0.5
3,805,682	-				+0.7
3,805,698	+				-0.6
3,805,732	+		CCNA_03647	0.14	-0.6
3,805,737	+		CCNA_03647	0.14	-0.5
3,805,737	+		CCNA_03647	0.14	+1.1
3,805,737	+		CCNA_03647	0.14	+0.0
3,805,740	-		CCNA_03647	0.14	-3.7
3,805,740	-		CCNA_03647	0.14	-0.2
3,805,740	-		CCNA_03647	0.14	-0.3
3,805,750	-		CCNA_03647	0.16	-2.0
3,805,809	+		CCNA_03647	0.22	+1.0
3,805,853	+		CCNA_03647	0.27	+1.5
3,805,854	-		CCNA_03647	0.28	+1.3
3,805,861	-		CCNA_03647	0.28	-0.9
3,805,874	-		CCNA_03647	0.30	+0.8
3,805,874	-		CCNA_03647	0.30	-1.7
3,805,874	-		CCNA_03647	0.30	-0.3
3,805,900	+		CCNA_03647	0.33	-0.2
3,805,909	+		CCNA_03647	0.34	-1.0
3,805,923	+		CCNA_03647	0.35	+0.2
3,805,943	-		CCNA_03647	0.38	+0.6
3,805,953	-				-0.0
3,805,975	-		CCNA_03647	0.41	-0.3
3,805,997	+		CCNA_03647	0.44	-3.5
3,806,057	-		CCNA_03647	0.51	+0.2
3,806,081	+		CCNA_03647	0.53	-0.3
3,806,081	+		CCNA_03647	0.53	+0.3
3,806,081	+		CCNA_03647	0.53	-0.8
3,806,081	+		CCNA_03647	0.53	-1.1
3,806,089	-		CCNA_03647	0.54	-1.1
3,806,089	-		CCNA_03647	0.54	-2.5
3,806,108	-		CCNA_03647	0.57	-3.4
3,806,124	-		CCNA_03647	0.58	-2.0
3,806,142	-		CCNA_03647	0.60	-1.2
3,806,179	+		CCNA_03647	0.65	+0.2
3,806,187	-		CCNA_03647	0.66	-2.1
3,806,191	+		CCNA_03647	0.66	+1.9
3,806,208	-		CCNA_03647	0.68	-2.0
3,806,208	-		CCNA_03647	0.68	+0.2
3,806,208	-		CCNA_03647	0.68	-1.5
3,806,276	-		CCNA_03647	0.76	-1.0
3,806,281	-		CCNA_03647	0.76	-2.7
3,806,307	+		CCNA_03647	0.79	+0.2
3,806,336	+		CCNA_03647	0.83	+1.0
3,806,336	+		CCNA_03647	0.83	-0.9
3,806,341	+		CCNA_03647	0.83	-0.5
3,806,341	+		CCNA_03647	0.83	-0.9
3,806,346	+		CCNA_03647	0.84	-1.0
3,806,370	+		CCNA_03647	0.86	-1.0
3,806,395	-		CCNA_03647	0.89	-2.2
3,806,397	-		CCNA_03647	0.89	-2.0
3,806,397	-		CCNA_03647	0.89	+1.2
3,806,422	-				-3.0
3,806,437	+				-0.6
3,806,437	+				-0.0
3,806,439	+				-1.4
3,806,445	-				-1.4
3,806,482	+				-0.7
3,806,485	-				+0.9
3,806,925	-				-1.7
3,806,947	+				-1.5
3,807,021	+				+1.0
3,807,042	-		CCNA_03649	0.12	-1.8
3,807,050	+		CCNA_03649	0.12	-2.9
3,807,060	+		CCNA_03649	0.13	+0.6
3,807,079	+		CCNA_03649	0.15	-2.1
3,807,092	-		CCNA_03649	0.16	-2.2
3,807,128	+		CCNA_03649	0.20	+0.4
3,807,128	+		CCNA_03649	0.20	-0.8
3,807,131	-		CCNA_03649	0.20	-0.0
3,807,133	+		CCNA_03649	0.20	-0.0
3,807,136	-		CCNA_03649	0.20	-0.8
3,807,143	+		CCNA_03649	0.21	-2.5
3,807,144	-		CCNA_03649	0.21	-0.8
3,807,177	+		CCNA_03649	0.24	+0.5
3,807,179	+		CCNA_03649	0.24	-2.0
3,807,199	+		CCNA_03649	0.26	+0.7
3,807,206	+		CCNA_03649	0.27	-0.6
3,807,206	+		CCNA_03649	0.27	-0.3
3,807,211	+		CCNA_03649	0.27	+0.9
3,807,219	-		CCNA_03649	0.28	+0.4
3,807,262	-		CCNA_03649	0.32	-1.7
3,807,286	+		CCNA_03649	0.34	-0.3
3,807,294	-		CCNA_03649	0.35	-1.2
3,807,361	-		CCNA_03649	0.41	-0.6
3,807,386	+		CCNA_03649	0.43	-2.7
3,807,409	-		CCNA_03649	0.45	+0.4
3,807,431	-		CCNA_03649	0.47	+2.0
3,807,437	+		CCNA_03649	0.48	-0.8
3,807,437	+		CCNA_03649	0.48	-3.5
3,807,437	+		CCNA_03649	0.48	-2.5
3,807,439	+		CCNA_03649	0.48	+0.4