Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03174

Experiment: PYE 0.5x 25C survival rep2 28 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 0.5x 25C survival rep2 28 days
3,332,449	+		CCNA_03172	0.64	-0.2
3,332,449	+		CCNA_03172	0.64	-0.3
3,332,557	+		CCNA_03172	0.78	-0.3
3,332,565	-		CCNA_03172	0.79	+0.7
3,332,569	+		CCNA_03172	0.80	-0.3
3,332,569	+		CCNA_03172	0.80	-0.3
3,332,577	-		CCNA_03172	0.81	-0.9
3,332,577	-		CCNA_03172	0.81	+0.1
3,332,587	+		CCNA_03172	0.82	-1.0
3,332,592	-		CCNA_03172	0.83	-0.3
3,332,593	+		CCNA_03172	0.83	-1.9
3,332,613	+		CCNA_03172	0.86	-0.3
3,332,620	+		CCNA_03172	0.87	+1.7
3,332,620	+		CCNA_03172	0.87	+1.0
3,332,628	-		CCNA_03172	0.88	-0.3
3,332,638	-				-1.2
3,332,638	-		CCNA_03172	0.89	-1.0
3,332,638	-		CCNA_03172	0.89	-1.9
3,332,705	-				-0.6
3,332,707	+				-0.2
3,332,715	-				+0.7
3,332,715	-				-1.0
3,332,715	-				-1.2
3,332,780	+				+0.3
3,332,780	+				+0.9
3,332,788	-				-0.2
3,332,842	+				-1.2
3,332,842	+				-0.2
3,332,842	+				-0.1
3,332,842	+				-0.7
3,332,842	+				-0.7
3,332,842	+				-0.1
3,332,842	+				+0.8
3,332,842	+				-2.1
3,332,842	+				-0.9
3,332,842	+				-1.9
3,332,842	+				+0.6
3,332,842	+				+0.7
3,332,842	+				-0.5
3,332,846	-				+0.3
3,332,850	-				+1.4
3,332,850	-				-0.5
3,332,850	-				-0.5
3,332,850	-				+0.0
3,332,850	-				+0.5
3,332,850	-				-1.3
3,332,850	-				+1.0
3,332,850	-				-0.3
3,332,850	-				+0.5
3,332,850	-				+0.7
3,332,850	-				-1.0
3,332,880	-				-1.5
3,332,905	-				+1.1
3,332,906	+				-0.9
3,332,914	-				-0.1
3,332,916	-				-1.2
3,332,974	+		CCNA_03173	0.15	-0.7
3,332,975	+		CCNA_03173	0.15	-0.0
3,332,982	-		CCNA_03173	0.17	+1.2
3,332,982	-				-1.5
3,332,983	-		CCNA_03173	0.17	+0.4
3,332,983	-		CCNA_03173	0.17	-0.6
3,332,983	-		CCNA_03173	0.17	+1.0
3,332,983	-		CCNA_03173	0.17	-1.2
3,333,002	-		CCNA_03173	0.21	-1.3
3,333,002	-		CCNA_03173	0.21	-1.0
3,333,002	-		CCNA_03173	0.21	-0.7
3,333,016	+		CCNA_03173	0.24	-2.3
3,333,019	-		CCNA_03173	0.24	-1.0
3,333,028	+		CCNA_03173	0.26	-1.8
3,333,028	+		CCNA_03173	0.26	+0.7
3,333,028	+		CCNA_03173	0.26	-1.5
3,333,028	+		CCNA_03173	0.26	-0.3
3,333,028	+		CCNA_03173	0.26	-1.3
3,333,028	+		CCNA_03173	0.26	+0.6
3,333,028	+		CCNA_03173	0.26	-1.3
3,333,028	+		CCNA_03173	0.26	+0.7
3,333,028	+		CCNA_03173	0.26	-2.0
3,333,029	+		CCNA_03173	0.26	-0.6
3,333,036	-		CCNA_03173	0.28	-0.2
3,333,036	-		CCNA_03173	0.28	+2.7
3,333,036	-		CCNA_03173	0.28	-1.1
3,333,036	-		CCNA_03173	0.28	+0.5
3,333,036	-		CCNA_03173	0.28	-0.4
3,333,036	-		CCNA_03173	0.28	+1.2
3,333,036	-		CCNA_03173	0.28	+1.1
3,333,036	-		CCNA_03173	0.28	-0.9
3,333,036	-		CCNA_03173	0.28	-0.0
3,333,036	-		CCNA_03173	0.28	+1.7
3,333,036	-		CCNA_03173	0.28	-1.0
3,333,036	-		CCNA_03173	0.28	-0.9
3,333,072	-		CCNA_03173	0.35	-1.4
3,333,076	-		CCNA_03173	0.36	-0.6
3,333,084	-		CCNA_03173	0.38	+0.7
3,333,089	-		CCNA_03173	0.39	-0.4
3,333,094	-				+1.0
3,333,175	+		CCNA_03173	0.57	-1.5
3,333,202	-		CCNA_03173	0.63	-0.6
3,333,236	+		CCNA_03173	0.70	+0.7
3,333,277	+		CCNA_03173	0.78	-2.3
3,333,277	+		CCNA_03173	0.78	-0.2
3,333,277	+		CCNA_03173	0.78	-0.1
3,333,277	+		CCNA_03173	0.78	-1.8
3,333,285	-				+0.1
3,333,292	+		CCNA_03173	0.82	+1.2
3,333,295	-		CCNA_03173	0.82	-0.5
3,333,318	+		CCNA_03173	0.87	-2.4
3,333,329	+		CCNA_03173	0.89	+0.6
3,333,329	+		CCNA_03173	0.89	-1.8
3,333,329	+		CCNA_03173	0.89	+0.5
3,333,337	-				+0.8
3,333,337	-				+1.0
3,333,342	+				-1.2
3,333,352	+				-1.6
3,333,352	+				-0.0
3,333,359	+				-0.1
3,333,360	-				-0.7
3,333,364	+				-1.3
3,333,372	-				+0.8
3,333,373	+				+1.3
3,333,381	-				+0.5
3,333,429	+				-0.1
3,333,434	+				-1.7
3,333,440	-				+2.0
3,333,454	+				+0.8
3,333,465	-				+2.0
3,333,478	-				-0.2
3,333,497	+				+0.4
3,333,526	+				+0.2
3,333,544	+				-1.6
3,333,559	+				+0.1
3,333,617	+		CCNA_03174	0.14	-1.0
3,333,624	-		CCNA_03174	0.14	-0.7
3,333,659	+		CCNA_03174	0.17	-0.5
3,333,659	+		CCNA_03174	0.17	+1.2
3,333,664	+		CCNA_03174	0.17	+1.6
3,333,672	-		CCNA_03174	0.18	-2.3
3,333,672	-		CCNA_03174	0.18	+1.8
3,333,672	-		CCNA_03174	0.18	+1.2
3,333,746	-		CCNA_03174	0.23	-1.5
3,333,766	+		CCNA_03174	0.24	+0.3
3,333,766	+		CCNA_03174	0.24	+0.2
3,333,766	+		CCNA_03174	0.24	+0.8
3,333,772	+		CCNA_03174	0.25	+0.8
3,333,774	-		CCNA_03174	0.25	+2.0
3,333,779	+		CCNA_03174	0.25	+0.4
3,333,798	+		CCNA_03174	0.27	+1.0
3,333,804	-		CCNA_03174	0.27	-2.1
3,333,828	-		CCNA_03174	0.29	-1.5
3,333,844	-		CCNA_03174	0.30	-0.6
3,333,870	+		CCNA_03174	0.32	-0.2
3,333,914	-		CCNA_03174	0.35	-0.8
3,333,956	+		CCNA_03174	0.38	+1.2
3,333,993	+		CCNA_03174	0.41	+0.2
3,333,996	-		CCNA_03174	0.41	-1.0
3,333,996	-		CCNA_03174	0.41	-1.7
3,334,070	+		CCNA_03174	0.46	+0.9
3,334,169	+		CCNA_03174	0.54	+1.5
3,334,190	+		CCNA_03174	0.55	-0.9
3,334,197	+		CCNA_03174	0.56	+1.4
3,334,205	-		CCNA_03174	0.56	-1.8
3,334,213	+		CCNA_03174	0.57	-1.0
3,334,232	+		CCNA_03174	0.58	-0.9
3,334,239	-		CCNA_03174	0.59	-3.2
3,334,249	+		CCNA_03174	0.59	+0.2
3,334,257	-		CCNA_03174	0.60	+0.1
3,334,373	-		CCNA_03174	0.68	-0.0
3,334,384	-		CCNA_03174	0.69	+1.1
3,334,472	-		CCNA_03174	0.76	-0.2
3,334,493	+		CCNA_03174	0.77	+1.4
3,334,505	-		CCNA_03174	0.78	+0.4
3,334,522	-		CCNA_03174	0.79	-0.7
3,334,525	-		CCNA_03174	0.79	-2.2
3,334,534	+		CCNA_03174	0.80	+0.1
3,334,535	+		CCNA_03174	0.80	+1.2
3,334,607	-		CCNA_03174	0.85	+0.2
3,334,681	+				+0.4
3,334,686	+				+0.8
3,334,688	+				+0.6
3,334,696	-				+1.0
3,334,696	-				+1.1
3,334,704	+				-0.3
3,334,714	+				+2.6
3,334,725	+				+4.8
3,334,743	+				+0.2
3,334,751	-				+0.4
3,334,773	-				+0.6
3,334,803	+				-0.2
3,334,803	+				-1.2
3,334,803	+				+0.7
3,334,811	-				-0.4
3,334,896	-		CCNA_03175	0.22	+1.2
3,334,901	+		CCNA_03175	0.23	-1.4
3,334,948	+		CCNA_03175	0.35	-0.5
3,334,948	+		CCNA_03175	0.35	-1.1
3,334,948	+		CCNA_03175	0.35	+2.5
3,334,956	-		CCNA_03175	0.37	+0.4
3,334,956	-		CCNA_03175	0.37	-0.1
3,334,956	-		CCNA_03175	0.37	-0.1
3,334,996	+		CCNA_03175	0.47	-3.1
3,335,002	-		CCNA_03175	0.48	+3.0
3,335,004	-		CCNA_03175	0.49	+0.3
3,335,043	-		CCNA_03175	0.59	+1.0
3,335,056	+		CCNA_03175	0.62	-0.6
3,335,064	-		CCNA_03175	0.64	+0.1
3,335,075	-		CCNA_03175	0.66	-1.6
3,335,152	+		CCNA_03175	0.85	+1.4
3,335,152	+		CCNA_03175	0.85	+2.0
3,335,160	-				-0.1
3,335,160	-				+0.0
3,335,176	-				+0.4
3,335,195	+				-1.2
3,335,195	+				+2.0
3,335,195	+				-1.0
3,335,203	-				-0.0
3,335,203	-				-1.2
3,335,208	-				+2.7
3,335,236	+		CCNA_03176	0.28	-1.9
3,335,244	-		CCNA_03176	0.31	-1.6
3,335,244	-		CCNA_03176	0.31	+0.7
3,335,256	-		CCNA_03176	0.35	-0.5
3,335,275	+		CCNA_03176	0.41	-0.9
3,335,283	-		CCNA_03176	0.44	-3.0
3,335,311	-		CCNA_03176	0.54	+1.0
3,335,329	+		CCNA_03176	0.60	-0.1
3,335,357	+		CCNA_03176	0.69	-0.6
3,335,360	-		CCNA_03176	0.70	-0.4
3,335,430	-				-0.6
3,335,479	-				+1.0
3,335,487	+				-0.8
3,335,490	-				+0.4
3,335,495	+				-0.5
3,335,500	+				+1.2
3,335,503	-				+0.2
3,335,503	-				+1.0
3,335,519	+				+0.1
3,335,527	-				+0.2
3,335,527	-				-0.8
3,335,542	+				-1.0
3,335,542	+				-1.9
3,335,542	+				+2.0
3,335,550	-				+0.5
3,335,591	-				-1.5
3,335,709	+		CCNA_03177	0.12	+0.4
3,335,787	+		CCNA_03177	0.16	-2.0