Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00316

Experiment: PYE 0.5x 25C survival rep2 28 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00315 and CCNA_00316 are separated by 23 nucleotidesCCNA_00316 and CCNA_00317 overlap by 4 nucleotides CCNA_00315: CCNA_00315 - 3-polyprenyl-4-hydroxybenzoate decarboxylase, at 329,224 to 330,753 _00315 CCNA_00316: CCNA_00316 - glutamate 5-kinase, at 330,777 to 331,910 _00316 CCNA_00317: CCNA_00317 - GTP-binding protein CgtA, at 331,907 to 332,971 _00317 Position (kb) 330 331 332Strain fitness (log2 ratio) -2 -1 0 1 2 3at 330.782 kb on - strandat 330.782 kb on - strandat 330.810 kb on - strandat 330.821 kb on + strandat 330.853 kb on + strandat 330.861 kb on - strandat 330.861 kb on - strandat 330.877 kb on + strandat 330.886 kb on - strandat 330.888 kb on + strandat 330.896 kb on - strand, within CCNA_00316at 330.896 kb on - strand, within CCNA_00316at 330.954 kb on - strand, within CCNA_00316at 331.016 kb on - strand, within CCNA_00316at 331.050 kb on + strand, within CCNA_00316at 331.050 kb on + strand, within CCNA_00316at 331.053 kb on - strand, within CCNA_00316at 331.053 kb on - strand, within CCNA_00316at 331.058 kb on - strand, within CCNA_00316at 331.058 kb on - strand, within CCNA_00316at 331.075 kb on + strand, within CCNA_00316at 331.081 kb on + strand, within CCNA_00316at 331.129 kb on - strand, within CCNA_00316at 331.177 kb on - strand, within CCNA_00316at 331.177 kb on - strand, within CCNA_00316at 331.182 kb on - strand, within CCNA_00316at 331.187 kb on - strand, within CCNA_00316at 331.187 kb on - strand, within CCNA_00316at 331.192 kb on - strand, within CCNA_00316at 331.192 kb on - strand, within CCNA_00316at 331.272 kb on - strand, within CCNA_00316at 331.330 kb on + strand, within CCNA_00316at 331.331 kb on - strand, within CCNA_00316at 331.338 kb on - strand, within CCNA_00316at 331.338 kb on - strand, within CCNA_00316at 331.357 kb on + strand, within CCNA_00316at 331.357 kb on + strand, within CCNA_00316at 331.362 kb on - strand, within CCNA_00316at 331.365 kb on - strand, within CCNA_00316at 331.374 kb on + strand, within CCNA_00316at 331.466 kb on + strand, within CCNA_00316at 331.509 kb on + strand, within CCNA_00316at 331.523 kb on - strand, within CCNA_00316at 331.523 kb on - strand, within CCNA_00316at 331.572 kb on + strand, within CCNA_00316at 331.572 kb on + strand, within CCNA_00316at 331.575 kb on - strand, within CCNA_00316at 331.581 kb on + strand, within CCNA_00316at 331.581 kb on + strand, within CCNA_00316at 331.581 kb on + strand, within CCNA_00316at 331.589 kb on - strand, within CCNA_00316at 331.592 kb on + strand, within CCNA_00316at 331.627 kb on + strand, within CCNA_00316at 331.640 kb on - strand, within CCNA_00316at 331.641 kb on + strand, within CCNA_00316at 331.641 kb on + strand, within CCNA_00316at 331.641 kb on + strand, within CCNA_00316at 331.641 kb on + strand, within CCNA_00316at 331.641 kb on + strand, within CCNA_00316at 331.641 kb on + strand, within CCNA_00316at 331.641 kb on + strand, within CCNA_00316at 331.644 kb on - strand, within CCNA_00316at 331.649 kb on - strand, within CCNA_00316at 331.649 kb on - strand, within CCNA_00316at 331.649 kb on - strand, within CCNA_00316at 331.649 kb on - strand, within CCNA_00316at 331.649 kb on - strand, within CCNA_00316at 331.649 kb on - strand, within CCNA_00316at 331.687 kb on - strand, within CCNA_00316at 331.694 kb on - strand, within CCNA_00316at 331.700 kb on + strand, within CCNA_00316at 331.700 kb on + strand, within CCNA_00316at 331.703 kb on - strand, within CCNA_00316at 331.708 kb on - strand, within CCNA_00316at 331.708 kb on - strand, within CCNA_00316at 331.786 kb on + strand, within CCNA_00316at 331.804 kb on - strandat 331.804 kb on - strandat 331.804 kb on - strandat 331.804 kb on - strandat 331.831 kb on + strandat 331.844 kb on + strandat 331.857 kb on + strandat 331.881 kb on + strandat 331.889 kb on - strandat 331.920 kb on - strandat 331.921 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 0.5x 25C survival rep2 28 days
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330,782 - -0.2
330,782 - +0.3
330,810 - +0.1
330,821 + -0.7
330,853 + -1.9
330,861 - +1.3
330,861 - +1.3
330,877 + -0.6
330,886 - +0.8
330,888 + +1.5
330,896 - CCNA_00316 0.10 -0.1
330,896 - CCNA_00316 0.10 -0.2
330,954 - CCNA_00316 0.16 -0.1
331,016 - CCNA_00316 0.21 -1.0
331,050 + CCNA_00316 0.24 -0.7
331,050 + CCNA_00316 0.24 +0.6
331,053 - CCNA_00316 0.24 +1.2
331,053 - CCNA_00316 0.24 -0.5
331,058 - CCNA_00316 0.25 +0.9
331,058 - CCNA_00316 0.25 +0.5
331,075 + CCNA_00316 0.26 +0.9
331,081 + CCNA_00316 0.27 -0.2
331,129 - CCNA_00316 0.31 +0.3
331,177 - CCNA_00316 0.35 +1.0
331,177 - CCNA_00316 0.35 +0.8
331,182 - CCNA_00316 0.36 +1.2
331,187 - CCNA_00316 0.36 -0.1
331,187 - CCNA_00316 0.36 -0.5
331,192 - CCNA_00316 0.37 +0.6
331,192 - CCNA_00316 0.37 +1.5
331,272 - CCNA_00316 0.44 +1.1
331,330 + CCNA_00316 0.49 -0.3
331,331 - CCNA_00316 0.49 +0.8
331,338 - CCNA_00316 0.49 +0.6
331,338 - CCNA_00316 0.49 -0.9
331,357 + CCNA_00316 0.51 -0.2
331,357 + CCNA_00316 0.51 +3.6
331,362 - CCNA_00316 0.52 +0.9
331,365 - CCNA_00316 0.52 +0.5
331,374 + CCNA_00316 0.53 +1.0
331,466 + CCNA_00316 0.61 +0.8
331,509 + CCNA_00316 0.65 +0.0
331,523 - CCNA_00316 0.66 +0.1
331,523 - CCNA_00316 0.66 -0.7
331,572 + CCNA_00316 0.70 +0.4
331,572 + CCNA_00316 0.70 -1.0
331,575 - CCNA_00316 0.70 -0.1
331,581 + CCNA_00316 0.71 +0.6
331,581 + CCNA_00316 0.71 -1.3
331,581 + CCNA_00316 0.71 +0.3
331,589 - CCNA_00316 0.72 -0.1
331,592 + CCNA_00316 0.72 -0.3
331,627 + CCNA_00316 0.75 -0.1
331,640 - CCNA_00316 0.76 -0.3
331,641 + CCNA_00316 0.76 -0.6
331,641 + CCNA_00316 0.76 -0.0
331,641 + CCNA_00316 0.76 +1.1
331,641 + CCNA_00316 0.76 +0.3
331,641 + CCNA_00316 0.76 +0.0
331,641 + CCNA_00316 0.76 -0.7
331,641 + CCNA_00316 0.76 +0.5
331,644 - CCNA_00316 0.76 +0.7
331,649 - CCNA_00316 0.77 +0.3
331,649 - CCNA_00316 0.77 +1.4
331,649 - CCNA_00316 0.77 -0.1
331,649 - CCNA_00316 0.77 +0.2
331,649 - CCNA_00316 0.77 +0.3
331,649 - CCNA_00316 0.77 -0.1
331,687 - CCNA_00316 0.80 +0.6
331,694 - CCNA_00316 0.81 +2.1
331,700 + CCNA_00316 0.81 +0.3
331,700 + CCNA_00316 0.81 -0.7
331,703 - CCNA_00316 0.82 +0.4
331,708 - CCNA_00316 0.82 +0.4
331,708 - CCNA_00316 0.82 -0.0
331,786 + CCNA_00316 0.89 +0.1
331,804 - +1.1
331,804 - +1.4
331,804 - +0.3
331,804 - +0.3
331,831 + -0.4
331,844 + +1.0
331,857 + +0.0
331,881 + +1.9
331,889 - +1.4
331,920 - +1.4
331,921 + +0.3

Or see this region's nucleotide sequence