Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00010

Experiment: PYE 0.5x 25C survival rep2 28 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00009 and CCNA_00010 are separated by 374 nucleotidesCCNA_00010 and CCNA_00011 are separated by 162 nucleotides CCNA_00009: CCNA_00009 - alkylated DNA repair protein AlkB, at 7,170 to 7,790 _00009 CCNA_00010: CCNA_00010 - chaperone protein DnaK, at 8,165 to 10,060 _00010 CCNA_00011: CCNA_00011 - chaperone protein DnaJ, at 10,223 to 11,380 _00011 Position (kb) 8 9 10 11Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 7.185 kb on - strandat 7.193 kb on + strandat 7.198 kb on + strandat 7.227 kb on + strandat 7.279 kb on + strand, within CCNA_00009at 7.287 kb on - strand, within CCNA_00009at 7.299 kb on - strand, within CCNA_00009at 7.354 kb on + strand, within CCNA_00009at 7.359 kb on + strand, within CCNA_00009at 7.367 kb on - strand, within CCNA_00009at 7.377 kb on - strand, within CCNA_00009at 7.384 kb on + strand, within CCNA_00009at 7.440 kb on - strand, within CCNA_00009at 7.459 kb on + strand, within CCNA_00009at 7.467 kb on - strand, within CCNA_00009at 7.467 kb on - strand, within CCNA_00009at 7.497 kb on + strand, within CCNA_00009at 7.497 kb on + strand, within CCNA_00009at 7.505 kb on - strandat 7.505 kb on - strand, within CCNA_00009at 7.507 kb on + strand, within CCNA_00009at 7.507 kb on + strand, within CCNA_00009at 7.507 kb on + strand, within CCNA_00009at 7.526 kb on - strand, within CCNA_00009at 7.548 kb on - strand, within CCNA_00009at 7.548 kb on - strand, within CCNA_00009at 7.566 kb on + strand, within CCNA_00009at 7.603 kb on - strand, within CCNA_00009at 7.622 kb on + strand, within CCNA_00009at 7.643 kb on + strand, within CCNA_00009at 7.657 kb on + strand, within CCNA_00009at 7.657 kb on + strand, within CCNA_00009at 7.665 kb on - strand, within CCNA_00009at 7.665 kb on - strand, within CCNA_00009at 7.665 kb on - strand, within CCNA_00009at 7.665 kb on - strand, within CCNA_00009at 7.692 kb on + strand, within CCNA_00009at 7.692 kb on + strand, within CCNA_00009at 7.700 kb on - strand, within CCNA_00009at 7.700 kb on - strand, within CCNA_00009at 7.700 kb on - strand, within CCNA_00009at 7.742 kb on - strandat 7.758 kb on + strandat 7.759 kb on - strandat 7.759 kb on - strandat 7.763 kb on + strandat 7.770 kb on + strandat 7.796 kb on - strandat 7.807 kb on + strandat 7.930 kb on + strandat 7.930 kb on + strandat 7.931 kb on + strandat 7.938 kb on - strandat 7.938 kb on - strandat 7.938 kb on - strandat 7.938 kb on - strandat 7.939 kb on - strandat 7.939 kb on - strandat 7.958 kb on - strandat 7.989 kb on - strandat 7.999 kb on + strandat 8.002 kb on - strandat 8.039 kb on + strandat 8.039 kb on + strandat 8.047 kb on - strandat 8.055 kb on - strandat 8.110 kb on + strandat 8.140 kb on + strandat 8.140 kb on + strandat 8.140 kb on + strandat 8.140 kb on + strandat 8.148 kb on - strandat 8.148 kb on - strandat 8.165 kb on - strandat 9.904 kb on + strandat 9.928 kb on + strandat 10.006 kb on - strandat 10.054 kb on + strandat 10.115 kb on + strandat 10.145 kb on + strandat 10.152 kb on + strandat 10.157 kb on + strandat 10.759 kb on - strand, within CCNA_00011at 10.963 kb on + strand, within CCNA_00011at 11.012 kb on + strand, within CCNA_00011at 11.057 kb on + strand, within CCNA_00011

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 0.5x 25C survival rep2 28 days
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7,185 - +0.4
7,193 + -0.6
7,198 + -1.0
7,227 + -0.6
7,279 + CCNA_00009 0.18 +0.1
7,287 - CCNA_00009 0.19 -1.6
7,299 - CCNA_00009 0.21 -0.9
7,354 + CCNA_00009 0.30 -0.5
7,359 + CCNA_00009 0.30 -1.6
7,367 - CCNA_00009 0.32 +0.3
7,377 - CCNA_00009 0.33 +1.3
7,384 + CCNA_00009 0.34 -0.4
7,440 - CCNA_00009 0.43 +0.4
7,459 + CCNA_00009 0.47 -2.4
7,467 - CCNA_00009 0.48 +0.1
7,467 - CCNA_00009 0.48 +1.2
7,497 + CCNA_00009 0.53 -1.6
7,497 + CCNA_00009 0.53 -2.4
7,505 - -1.2
7,505 - CCNA_00009 0.54 +1.3
7,507 + CCNA_00009 0.54 +0.6
7,507 + CCNA_00009 0.54 -0.1
7,507 + CCNA_00009 0.54 -0.2
7,526 - CCNA_00009 0.57 -1.1
7,548 - CCNA_00009 0.61 -2.0
7,548 - CCNA_00009 0.61 -1.8
7,566 + CCNA_00009 0.64 +0.4
7,603 - CCNA_00009 0.70 -1.6
7,622 + CCNA_00009 0.73 -1.6
7,643 + CCNA_00009 0.76 -1.0
7,657 + CCNA_00009 0.78 +2.1
7,657 + CCNA_00009 0.78 +0.6
7,665 - CCNA_00009 0.80 -1.9
7,665 - CCNA_00009 0.80 -0.5
7,665 - CCNA_00009 0.80 -0.9
7,665 - CCNA_00009 0.80 +0.4
7,692 + CCNA_00009 0.84 -0.5
7,692 + CCNA_00009 0.84 -0.2
7,700 - CCNA_00009 0.85 +0.9
7,700 - CCNA_00009 0.85 -2.6
7,700 - CCNA_00009 0.85 -0.1
7,742 - +0.1
7,758 + -0.5
7,759 - -1.5
7,759 - +0.9
7,763 + +0.5
7,770 + +1.0
7,796 - +0.6
7,807 + -0.2
7,930 + -1.7
7,930 + -1.2
7,931 + +0.5
7,938 - -0.8
7,938 - -1.2
7,938 - +0.1
7,938 - -2.8
7,939 - -0.4
7,939 - -0.2
7,958 - -2.2
7,989 - -2.4
7,999 + -2.3
8,002 - -2.8
8,039 + -1.1
8,039 + -2.6
8,047 - -1.9
8,055 - +2.3
8,110 + -2.5
8,140 + -0.7
8,140 + +1.4
8,140 + +0.6
8,140 + -0.2
8,148 - -1.2
8,148 - -2.4
8,165 - -1.5
9,904 + -1.8
9,928 + -1.6
10,006 - -0.7
10,054 + +1.5
10,115 + +1.7
10,145 + -1.9
10,152 + +1.4
10,157 + -1.8
10,759 - CCNA_00011 0.46 -1.1
10,963 + CCNA_00011 0.64 -1.9
11,012 + CCNA_00011 0.68 -1.4
11,057 + CCNA_00011 0.72 -1.2

Or see this region's nucleotide sequence