Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS20845

Experiment: A22 0.1 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS20840 and BWI76_RS20845 are separated by 78 nucleotidesBWI76_RS20845 and BWI76_RS20850 are separated by 58 nucleotides BWI76_RS20840: BWI76_RS20840 - hypothetical protein, at 4,356,046 to 4,357,113 _RS20840 BWI76_RS20845: BWI76_RS20845 - GDP-mannose pyrophosphatase NudK, at 4,357,192 to 4,357,776 _RS20845 BWI76_RS20850: BWI76_RS20850 - oxidoreductase FeS-binding subunit, at 4,357,835 to 4,359,799 _RS20850 Position (kb) 4357 4358Strain fitness (log2 ratio) -2 -1 0 1at 4356.279 kb on + strand, within BWI76_RS20840at 4356.306 kb on + strand, within BWI76_RS20840at 4356.337 kb on - strand, within BWI76_RS20840at 4356.674 kb on + strand, within BWI76_RS20840at 4356.719 kb on + strand, within BWI76_RS20840at 4356.742 kb on - strand, within BWI76_RS20840at 4356.930 kb on + strand, within BWI76_RS20840at 4357.582 kb on - strand, within BWI76_RS20845at 4357.656 kb on - strand, within BWI76_RS20845at 4357.656 kb on - strand, within BWI76_RS20845at 4357.807 kb on + strandat 4357.834 kb on - strandat 4358.128 kb on + strand, within BWI76_RS20850at 4358.624 kb on - strand, within BWI76_RS20850

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.1 mg/ml
remove
4,356,279 + BWI76_RS20840 0.22 -0.7
4,356,306 + BWI76_RS20840 0.24 +0.3
4,356,337 - BWI76_RS20840 0.27 +0.0
4,356,674 + BWI76_RS20840 0.59 +0.2
4,356,719 + BWI76_RS20840 0.63 +0.7
4,356,742 - BWI76_RS20840 0.65 -0.4
4,356,930 + BWI76_RS20840 0.83 -1.8
4,357,582 - BWI76_RS20845 0.67 +0.8
4,357,656 - BWI76_RS20845 0.79 +0.9
4,357,656 - BWI76_RS20845 0.79 +1.2
4,357,807 + -0.0
4,357,834 - -0.5
4,358,128 + BWI76_RS20850 0.15 -0.4
4,358,624 - BWI76_RS20850 0.40 -0.5

Or see this region's nucleotide sequence