Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0464

Experiment: Varel_Bryant medium with Chlorhexidine diacetate salt 0.0015 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT0463 and BT0464 are separated by 30 nucleotidesBT0464 and BT0465 are separated by 3 nucleotidesBT0465 and BT0466 are separated by 2 nucleotides BT0463: BT0463 - glucose-1-phosphate thymidylyltransferase (NCBI ptt file), at 573,896 to 574,783 BT0463 BT0464: BT0464 - dTDP-4-dehydrorhamnose 3,5-epimerase (NCBI ptt file), at 574,814 to 575,383 BT0464 BT0465: BT0465 - dTDP-4-dehydrorhamnose reductase (NCBI ptt file), at 575,387 to 576,241 BT0465 BT0466: BT0466 - dTDP-glucose 4,6-dehydratase (NCBI ptt file), at 576,244 to 577,356 BT0466 Position (kb) 574 575 576Strain fitness (log2 ratio) -2 -1 0 1 2at 573.880 kb on + strandat 573.977 kb on - strandat 573.999 kb on - strand, within BT0463at 574.031 kb on - strand, within BT0463at 574.062 kb on - strand, within BT0463at 574.288 kb on + strand, within BT0463at 574.352 kb on - strand, within BT0463at 574.430 kb on + strand, within BT0463at 574.435 kb on + strand, within BT0463at 574.462 kb on + strand, within BT0463at 574.549 kb on - strand, within BT0463at 574.549 kb on - strand, within BT0463at 574.664 kb on - strand, within BT0463at 574.691 kb on - strand, within BT0463at 574.720 kb on + strandat 574.746 kb on - strandat 574.791 kb on - strandat 574.823 kb on - strandat 574.840 kb on - strandat 574.948 kb on - strand, within BT0464at 574.964 kb on - strand, within BT0464at 574.964 kb on - strand, within BT0464at 574.992 kb on + strand, within BT0464at 574.992 kb on + strand, within BT0464at 575.041 kb on + strand, within BT0464at 575.107 kb on - strand, within BT0464at 575.107 kb on - strand, within BT0464at 575.107 kb on - strand, within BT0464at 575.128 kb on + strand, within BT0464at 575.376 kb on + strandat 575.410 kb on + strandat 575.461 kb on + strandat 575.470 kb on - strandat 575.527 kb on - strand, within BT0465at 575.547 kb on + strand, within BT0465at 575.582 kb on - strand, within BT0465at 575.624 kb on - strand, within BT0465at 575.680 kb on + strand, within BT0465at 575.710 kb on + strand, within BT0465at 575.716 kb on + strand, within BT0465at 575.744 kb on - strand, within BT0465at 575.840 kb on + strand, within BT0465at 575.894 kb on - strand, within BT0465at 575.936 kb on - strand, within BT0465at 576.005 kb on - strand, within BT0465at 576.005 kb on - strand, within BT0465at 576.005 kb on - strand, within BT0465at 576.008 kb on + strand, within BT0465at 576.148 kb on - strand, within BT0465at 576.155 kb on - strand, within BT0465at 576.340 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Varel_Bryant medium with Chlorhexidine diacetate salt 0.0015 mM
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573,880 + +0.0
573,977 - -2.1
573,999 - BT0463 0.12 +1.9
574,031 - BT0463 0.15 +0.9
574,062 - BT0463 0.19 +0.9
574,288 + BT0463 0.44 -1.5
574,352 - BT0463 0.51 +0.1
574,430 + BT0463 0.60 -0.1
574,435 + BT0463 0.61 -0.8
574,462 + BT0463 0.64 -0.7
574,549 - BT0463 0.74 +1.4
574,549 - BT0463 0.74 -0.1
574,664 - BT0463 0.86 +0.3
574,691 - BT0463 0.90 -2.7
574,720 + -0.7
574,746 - -0.1
574,791 - -1.2
574,823 - +0.1
574,840 - +1.9
574,948 - BT0464 0.24 -0.7
574,964 - BT0464 0.26 -0.1
574,964 - BT0464 0.26 -0.4
574,992 + BT0464 0.31 -2.7
574,992 + BT0464 0.31 -1.7
575,041 + BT0464 0.40 -1.1
575,107 - BT0464 0.51 -0.6
575,107 - BT0464 0.51 -2.6
575,107 - BT0464 0.51 -0.1
575,128 + BT0464 0.55 -1.1
575,376 + +0.3
575,410 + -0.5
575,461 + +0.3
575,470 - -0.1
575,527 - BT0465 0.16 -0.6
575,547 + BT0465 0.19 -0.7
575,582 - BT0465 0.23 -1.9
575,624 - BT0465 0.28 -0.3
575,680 + BT0465 0.34 +0.3
575,710 + BT0465 0.38 +0.9
575,716 + BT0465 0.38 +0.3
575,744 - BT0465 0.42 +0.9
575,840 + BT0465 0.53 -0.7
575,894 - BT0465 0.59 -2.1
575,936 - BT0465 0.64 +0.9
576,005 - BT0465 0.72 -0.6
576,005 - BT0465 0.72 -0.7
576,005 - BT0465 0.72 +2.4
576,008 + BT0465 0.73 -0.7
576,148 - BT0465 0.89 -1.5
576,155 - BT0465 0.90 -0.4
576,340 - -0.2

Or see this region's nucleotide sequence