Experiment: Pyruvate-Sulfate (60-15mM) with Aluminum 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0647 and fepC overlap by 23 nucleotides fepC and DVU0649 overlap by 4 nucleotides DVU0649 and DVU0650 are separated by 1 nucleotides
DVU0647: DVU0647 - iron compound ABC transporter, periplasmic iron compount-binding protein, putative (TIGR), at 717,840 to 718,754
DVU0647
DVU0648: fepC - iron compound ABC transporter, ATP-binding protein (TIGR), at 718,732 to 719,547
fepC
DVU0649: DVU0649 - iron compound ABC transporter, permease protein (TIGR), at 719,544 to 720,599
DVU0649
DVU0650: DVU0650 - chelatase, putative (TIGR), at 720,601 to 721,494
DVU0650
Position (kb) 719
720
721 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 718.611 kb on + strand, within DVU0647 at 718.711 kb on + strand at 718.737 kb on - strand at 718.744 kb on + strand at 718.746 kb on + strand at 718.746 kb on + strand at 718.754 kb on - strand at 718.754 kb on - strand at 718.779 kb on + strand at 718.782 kb on - strand at 718.871 kb on + strand, within fepC at 718.889 kb on + strand, within fepC at 718.912 kb on - strand, within fepC at 718.934 kb on + strand, within fepC at 718.939 kb on + strand, within fepC at 718.947 kb on - strand, within fepC at 718.947 kb on - strand, within fepC at 719.020 kb on + strand, within fepC at 719.021 kb on - strand, within fepC at 719.054 kb on - strand, within fepC at 719.145 kb on - strand, within fepC at 719.265 kb on + strand, within fepC at 719.439 kb on + strand, within fepC at 719.630 kb on + strand at 719.630 kb on + strand at 719.638 kb on - strand at 719.638 kb on - strand at 719.734 kb on - strand, within DVU0649 at 719.778 kb on + strand, within DVU0649 at 719.820 kb on - strand, within DVU0649 at 719.847 kb on + strand, within DVU0649 at 720.225 kb on + strand, within DVU0649 at 720.237 kb on + strand, within DVU0649 at 720.248 kb on + strand, within DVU0649 at 720.250 kb on - strand, within DVU0649 at 720.250 kb on - strand, within DVU0649 at 720.251 kb on - strand, within DVU0649 at 720.251 kb on - strand, within DVU0649 at 720.251 kb on - strand, within DVU0649 at 720.363 kb on - strand, within DVU0649 at 720.396 kb on - strand, within DVU0649 at 720.475 kb on - strand, within DVU0649 at 720.477 kb on + strand, within DVU0649 at 720.494 kb on + strand at 720.502 kb on - strand at 720.522 kb on + strand at 720.621 kb on - strand at 720.639 kb on + strand at 720.681 kb on + strand at 720.689 kb on - strand at 720.730 kb on - strand, within DVU0650 at 720.738 kb on + strand, within DVU0650 at 720.803 kb on + strand, within DVU0650 at 720.809 kb on + strand, within DVU0650 at 720.817 kb on - strand, within DVU0650 at 720.819 kb on + strand, within DVU0650 at 720.920 kb on - strand, within DVU0650 at 720.925 kb on - strand, within DVU0650 at 720.946 kb on + strand, within DVU0650 at 720.954 kb on - strand, within DVU0650 at 720.969 kb on - strand, within DVU0650 at 721.072 kb on + strand, within DVU0650 at 721.072 kb on + strand, within DVU0650 at 721.072 kb on + strand, within DVU0650 at 721.100 kb on - strand, within DVU0650 at 721.112 kb on - strand, within DVU0650 at 721.152 kb on - strand, within DVU0650 at 721.154 kb on - strand, within DVU0650 at 721.171 kb on + strand, within DVU0650 at 721.223 kb on + strand, within DVU0650 at 721.288 kb on + strand, within DVU0650 at 721.344 kb on + strand, within DVU0650 at 721.437 kb on - strand at 721.477 kb on - strand at 721.548 kb on + strand at 721.548 kb on + strand at 721.548 kb on + strand at 721.548 kb on + strand at 721.548 kb on + strand at 721.548 kb on + strand at 721.548 kb on + strand at 721.556 kb on - strand at 721.556 kb on - strand at 721.556 kb on - strand at 721.584 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfate (60-15mM) with Aluminum 1mM remove 718,611 + DVU0647 0.84 +0.1 718,711 + +0.0 718,737 - -0.8 718,744 + -1.1 718,746 + -0.4 718,746 + -0.6 718,754 - -0.4 718,754 - -0.3 718,779 + -0.1 718,782 - +0.5 718,871 + fepC DVU0648 0.17 +0.4 718,889 + fepC DVU0648 0.19 -0.3 718,912 - fepC DVU0648 0.22 +0.4 718,934 + fepC DVU0648 0.25 +2.5 718,939 + fepC DVU0648 0.25 -1.4 718,947 - fepC DVU0648 0.26 -0.2 718,947 - fepC DVU0648 0.26 -0.6 719,020 + fepC DVU0648 0.35 -1.1 719,021 - fepC DVU0648 0.35 -1.4 719,054 - fepC DVU0648 0.39 -0.2 719,145 - fepC DVU0648 0.51 -0.3 719,265 + fepC DVU0648 0.65 -0.1 719,439 + fepC DVU0648 0.87 -0.4 719,630 + -2.0 719,630 + -0.4 719,638 - -0.3 719,638 - +1.1 719,734 - DVU0649 0.18 +0.2 719,778 + DVU0649 0.22 +0.2 719,820 - DVU0649 0.26 -0.9 719,847 + DVU0649 0.29 -1.8 720,225 + DVU0649 0.64 +0.9 720,237 + DVU0649 0.66 -0.5 720,248 + DVU0649 0.67 -0.1 720,250 - DVU0649 0.67 -0.8 720,250 - DVU0649 0.67 -0.1 720,251 - DVU0649 0.67 -3.7 720,251 - DVU0649 0.67 +0.2 720,251 - DVU0649 0.67 -0.8 720,363 - DVU0649 0.78 -0.1 720,396 - DVU0649 0.81 -0.1 720,475 - DVU0649 0.88 -0.7 720,477 + DVU0649 0.88 -1.0 720,494 + -0.8 720,502 - -0.8 720,522 + +1.5 720,621 - -1.9 720,639 + -1.0 720,681 + +0.9 720,689 - -0.5 720,730 - DVU0650 0.14 -0.9 720,738 + DVU0650 0.15 -2.8 720,803 + DVU0650 0.23 -0.5 720,809 + DVU0650 0.23 -0.5 720,817 - DVU0650 0.24 -0.8 720,819 + DVU0650 0.24 -0.9 720,920 - DVU0650 0.36 -0.5 720,925 - DVU0650 0.36 -1.3 720,946 + DVU0650 0.39 -0.1 720,954 - DVU0650 0.39 -0.8 720,969 - DVU0650 0.41 -0.8 721,072 + DVU0650 0.53 -0.1 721,072 + DVU0650 0.53 -0.9 721,072 + DVU0650 0.53 -3.6 721,100 - DVU0650 0.56 -0.7 721,112 - DVU0650 0.57 -0.9 721,152 - DVU0650 0.62 -0.2 721,154 - DVU0650 0.62 -0.6 721,171 + DVU0650 0.64 -0.9 721,223 + DVU0650 0.70 -0.6 721,288 + DVU0650 0.77 +0.7 721,344 + DVU0650 0.83 -0.8 721,437 - -0.5 721,477 - -0.1 721,548 + -0.1 721,548 + -1.1 721,548 + +0.3 721,548 + -0.7 721,548 + -0.5 721,548 + +0.2 721,548 + -0.6 721,556 - -0.1 721,556 - -0.9 721,556 - +0.2 721,584 - -0.9
Or see this region's nucleotide sequence